NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912534
Clone id YMU001_000020_A09
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATAGTATAAAAGGTTTCACATAGTGAATGATGAAGACTAAAAAGGGCTTAGGACTTACA
TTTTAAACTTCAAACATAAGCATAAATTTTGAGACTTAAGTTTTAGGCTTGAAACAAAAC
CCTAAACTTTAAGACTTAAGCCTTAGGCTGAGCTTAAGATTAAGCCTCACTTTCAAATGT
GCTTTAGGTATCATTTTAGGTTAGCATTTTTGTGTTAATGTGCTAAATGGAGCCTTTCTA
GCATAAAATGTCTCGGTTAGATGATGGAAATGAAATGGATTCTATGGTTATTGAAAATCC
ACTAGAATATTTTCTAAATAGGTAAAAATTTGGCTTTTTTCATCTTTCAGATGAAGACAA
AAAAATAGAAGACGGAGATAACATATCTCAAGCAGCACAAGTGCTGCCCACCATTGTTGG
AGAGACCGAGTTTCATAAAGGTGATCTTGTAGAGCACAAAAGTGATCTTGTAGAACAAAC
CTCTCAAAAAAATCC
■■Homology search results ■■ -
sp_hit_id Q80U16
Definition sp|Q80U16|FA65B_MOUSE Protein FAM65B OS=Mus musculus
Align length 53
Score (bit) 30.0
E-value 6.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912534|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_A09.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80U16|FA65B_MOUSE Protein FAM65B OS=Mus musculus GN=Fam65b P...    30   6.0  

>sp|Q80U16|FA65B_MOUSE Protein FAM65B OS=Mus musculus GN=Fam65b PE=1
           SV=2
          Length = 1078

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 281 SMVIENPLEYFLNR*KFGFFHLSDEDKKIEDGDNISQAAQVLPTIVGETEFHK 439
           S+ +E+ LE       F F + SD D++ EDGD++        ++  +TE  K
Sbjct: 663 SLTVESALE------SFDFLNTSDFDEEEEDGDDVCHVGGGADSVFSDTETEK 709
tr_hit_id Q04Y10
Definition tr|Q04Y10|Q04Y10_LEPBL Putative uncharacterized protein OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550)
Align length 79
Score (bit) 36.2
E-value 0.86
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912534|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_A09.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q04Y10|Q04Y10_LEPBL Putative uncharacterized protein OS=Lepto...    36   0.86 
tr|Q04VG4|Q04VG4_LEPBJ Putative uncharacterized protein OS=Lepto...    36   0.86 
tr|B3RY32|B3RY32_TRIAD Putative uncharacterized protein (Fragmen...    33   7.3  

>tr|Q04Y10|Q04Y10_LEPBL Putative uncharacterized protein
           OS=Leptospira borgpetersenii serovar Hardjo-bovis
           (strain L550) GN=LBL_2687 PE=4 SV=1
          Length = 682

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +2

Query: 260 DDGNEMDSMVIENPLEYFLNR*KFGFFHLSDEDKKIE-DGDNISQAAQVLPTIVGETEFH 436
           +D  ++DS +IEN  +YFLN           EDK +E  G NIS   + L     E +  
Sbjct: 125 EDVGDLDSKIIENLTKYFLN---------YIEDKSVESSGKNISLKNEALNFFNKEFQLS 175

Query: 437 KGDLVEHKSDLVEQTSQKN 493
             ++V + +DL+ + S+ N
Sbjct: 176 AEEMVANLNDLINKYSKFN 194


>tr|Q04VG4|Q04VG4_LEPBJ Putative uncharacterized protein
           OS=Leptospira borgpetersenii serovar Hardjo-bovis
           (strain JB197) GN=LBJ_0390 PE=4 SV=1
          Length = 682

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +2

Query: 260 DDGNEMDSMVIENPLEYFLNR*KFGFFHLSDEDKKIE-DGDNISQAAQVLPTIVGETEFH 436
           +D  ++DS +IEN  +YFLN           EDK +E  G NIS   + L     E +  
Sbjct: 125 EDVGDLDSKIIENLTKYFLN---------YIEDKSVESSGKNISLKNEALNFFNKEFQLS 175

Query: 437 KGDLVEHKSDLVEQTSQKN 493
             ++V + +DL+ + S+ N
Sbjct: 176 AEEMVANLNDLINKYSKFN 194


>tr|B3RY32|B3RY32_TRIAD Putative uncharacterized protein (Fragment)
           OS=Trichoplax adhaerens GN=TRIADDRAFT_11272 PE=4 SV=1
          Length = 633

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -2

Query: 452 LQDHLYETRSLQQWWAALVLLEICYLRLLFFCLHLKDEKSQIFT 321
           L D L+E   ++Q   + +LLE CY  L+F CL L +E   I++
Sbjct: 240 LDDELFEELRIKQPVRSEILLEDCYFTLVFTCLKLFEEVYYIWS 283