NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912535
Clone id YMU001_000020_A10
Library
Length 255
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCAAAATTGTGGTCCAAATAATATGAAGGAGACAATAGCCCTGCTTTAACAAAGGGCTG
GAAAGTACTCACTTTTATTCTTGAACTCTGACACACTTTCAATCAAAATATCTTTAGCAT
ATTTTGAGACTTTATTTGCACCTTGTTCTGCCCTGGCATTAGAGCCCCAGACGCAGACAG
TCAATTTCCGAAGGCTCGATGATGTTTGCACCAAGTAAGTGTTGTACCAGCTCATGATAT
CAGCCTTGGTGATGC
■■Homology search results ■■ -
sp_hit_id Q9SCV8
Definition sp|Q9SCV8|BGAL4_ARATH Beta-galactosidase 4 OS=Arabidopsis thaliana
Align length 59
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912535|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_A10.
         (255 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SCV8|BGAL4_ARATH Beta-galactosidase 4 OS=Arabidopsis thalia...    34   0.26 
sp|Q9LFA6|BGAL2_ARATH Beta-galactosidase 2 OS=Arabidopsis thalia...    34   0.26 
sp|Q9SCV0|BGL12_ARATH Beta-galactosidase 12 OS=Arabidopsis thali...    32   0.75 

>sp|Q9SCV8|BGAL4_ARATH Beta-galactosidase 4 OS=Arabidopsis thaliana
           GN=BGAL4 PE=1 SV=1
          Length = 724

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -3

Query: 226 YNTYLVQTSSSLRKL----TVCVWGSNARAEQGANKVSKYAKDILIESVSEFKNKSEYF 62
           YNT  V   S  R +    T   WGS   A   AN+   +A++ L+E +S   +KS+YF
Sbjct: 412 YNTAKVNAPSVHRNMVPTGTKFSWGSFNEATPTANEAGTFARNGLVEQISMTWDKSDYF 470


>sp|Q9LFA6|BGAL2_ARATH Beta-galactosidase 2 OS=Arabidopsis thaliana
           GN=BGAL2 PE=2 SV=1
          Length = 727

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -3

Query: 229 WYNTYLVQTSSSLRKL----TVCVWGSNARAEQGANKVSKYAKDILIESVSEFKNKSEYF 62
           +YNT  ++  + L K+    T   W S       +N+   + KD L+E +S  ++K++YF
Sbjct: 411 YYNTAKIRAPTILMKMIPTSTKFSWESYNEGSPSSNEAGTFVKDGLVEQISMTRDKTDYF 470


>sp|Q9SCV0|BGL12_ARATH Beta-galactosidase 12 OS=Arabidopsis thaliana
           GN=BGAL12 PE=2 SV=1
          Length = 728

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = -3

Query: 229 WYNTYLVQ--TSSSLRKL----TVCVWGSNARAEQGANKVSKYAKDILIESVSEFKNKSE 68
           +YNT  VQ  TSS   K+    T   WGS       AN    +++D L+E +S  ++K++
Sbjct: 411 YYNTAKVQVRTSSIHMKMVPTNTPFSWGSYNEEIPSANDNGTFSQDGLVEQISITRDKTD 470

Query: 67  YF 62
           YF
Sbjct: 471 YF 472
tr_hit_id A5BSB3
Definition tr|A5BSB3|A5BSB3_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 71
Score (bit) 57.0
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912535|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_A10.
         (255 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BSB3|A5BSB3_VITVI Putative uncharacterized protein OS=Vitis...    57   5e-07
tr|A7NY13|A7NY13_VITVI Chromosome chr6 scaffold_3, whole genome ...    56   1e-06
tr|Q9M9Z4|Q9M9Z4_ARATH Putative N-arginine dibasic convertase OS...    51   3e-05
tr|Q0WNY2|Q0WNY2_ARATH Putative uncharacterized protein At1g0690...    51   3e-05
tr|Q10LS9|Q10LS9_ORYSJ Os03g0336300 protein OS=Oryza sativa subs...    49   2e-04
tr|A9S1I9|A9S1I9_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|A3AHQ0|A3AHQ0_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A2XGF5|A2XGF5_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|B7GEM5|B7GEM5_PHATR Predicted protein OS=Phaeodactylum tricor...    35   1.9  
tr|B3L8U0|B3L8U0_PLAKH Myosin, putative OS=Plasmodium knowlesi (...    35   2.5  
tr|Q9SCM6|Q9SCM6_ARATH Putative uncharacterized protein T8H10.60...    33   5.5  

>tr|A5BSB3|A5BSB3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010856 PE=4 SV=1
          Length = 302

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
 Frame = -3

Query: 253 ITKADIMSWYNTYLVQTSSSLRKLTVCVWGSNA---RAEQGANKVSKYAKDILIESVSEF 83
           I K+DI+ WY TYL+Q+S + R+L + VWG N     AE  +  V       +IE ++ F
Sbjct: 238 ICKSDIIDWYRTYLLQSSPNCRRLAIRVWGCNTDLKEAEAQSQSVQ------VIEDLTVF 291

Query: 82  KNKSEYFPALC 50
           K  SE++P++C
Sbjct: 292 KTSSEFYPSIC 302


>tr|A7NY13|A7NY13_VITVI Chromosome chr6 scaffold_3, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00023945001
            PE=4 SV=1
          Length = 1096

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
 Frame = -3

Query: 253  ITKADIMSWYNTYLVQTSSSLRKLTVCVWGSNA---RAEQGANKVSKYAKDILIESVSEF 83
            I K+DI+ WY TYL+Q+S + R+L V VWG N     AE  +  V       +IE ++ F
Sbjct: 1032 ICKSDIIDWYRTYLLQSSPNCRRLAVRVWGCNTDLKEAEAQSQSVQ------VIEDLTVF 1085

Query: 82   KNKSEYFPALC 50
            K  S+++P++C
Sbjct: 1086 KTSSKFYPSIC 1096


>tr|Q9M9Z4|Q9M9Z4_ARATH Putative N-arginine dibasic convertase
            OS=Arabidopsis thaliana GN=F4H5.4 PE=3 SV=1
          Length = 1039

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 23/68 (33%), Positives = 43/68 (63%)
 Frame = -3

Query: 253  ITKADIMSWYNTYLVQTSSSLRKLTVCVWGSNARAEQGANKVSKYAKDILIESVSEFKNK 74
            I K D++SWY TY  ++S   R+L V VWG +   ++   +  + A  ++ ++V+ FK+ 
Sbjct: 975  IQKKDVISWYKTYFRESSPKCRRLAVRVWGCDTNMKE--TQTDQKAVQVIADAVA-FKST 1031

Query: 73   SEYFPALC 50
            S+++P+LC
Sbjct: 1032 SKFYPSLC 1039


>tr|Q0WNY2|Q0WNY2_ARATH Putative uncharacterized protein At1g06900
            (Fragment) OS=Arabidopsis thaliana GN=At1g06900 PE=2 SV=1
          Length = 1061

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 23/68 (33%), Positives = 43/68 (63%)
 Frame = -3

Query: 253  ITKADIMSWYNTYLVQTSSSLRKLTVCVWGSNARAEQGANKVSKYAKDILIESVSEFKNK 74
            I K D++SWY TY  ++S   R+L V VWG +   ++   +  + A  ++ ++V+ FK+ 
Sbjct: 997  IQKKDVISWYKTYFRESSPKCRRLAVRVWGCDTNMKE--TQTDQKAVQVIADAVA-FKST 1053

Query: 73   SEYFPALC 50
            S+++P+LC
Sbjct: 1054 SKFYPSLC 1061


>tr|Q10LS9|Q10LS9_ORYSJ Os03g0336300 protein OS=Oryza sativa subsp.
            japonica GN=Os03g0336300 PE=2 SV=1
          Length = 1040

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 23/68 (33%), Positives = 38/68 (55%)
 Frame = -3

Query: 253  ITKADIMSWYNTYLVQTSSSLRKLTVCVWGSNARAEQGANKVSKYAKDILIESVSEFKNK 74
            + K D++SWYNTY+  +S   R+L + V+G N+   + A    K    I I+ V   K  
Sbjct: 975  VRKEDVISWYNTYIKPSSPKRRRLAIHVYGCNSDIAEAAK--LKEQSWITIDDVKSLKKS 1032

Query: 73   SEYFPALC 50
            S+++ +LC
Sbjct: 1033 SQFYSSLC 1040


>tr|A9S1I9|A9S1I9_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_122708 PE=3 SV=1
          Length = 967

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 38/65 (58%)
 Frame = -3

Query: 253  ITKADIMSWYNTYLVQTSSSLRKLTVCVWGSNARAEQGANKVSKYAKDILIESVSEFKNK 74
            I K +I+ ++  Y   +S   RKL++ +WG NA++E+G    + +    +++ +S FK K
Sbjct: 903  IEKKEILDFFTKYFSPSSLGRRKLSIHIWGGNAKSEKGDKLANSFKDVTVVDDLSSFKAK 962

Query: 73   SEYFP 59
             E +P
Sbjct: 963  IELYP 967


>tr|A3AHQ0|A3AHQ0_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_010322 PE=3 SV=1
          Length = 1040

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 23/68 (33%), Positives = 38/68 (55%)
 Frame = -3

Query: 253  ITKADIMSWYNTYLVQTSSSLRKLTVCVWGSNARAEQGANKVSKYAKDILIESVSEFKNK 74
            + K D++SWYNTY+  +S   R+L + V+G N+   + A    K    I I+ V   K  
Sbjct: 975  VRKEDVISWYNTYIKPSSPKRRRLAIHVYGCNSDIAEAAK--LKEQSWITIDDVKSLKKS 1032

Query: 73   SEYFPALC 50
            S+++ +LC
Sbjct: 1033 SQFYSSLC 1040


>tr|A2XGF5|A2XGF5_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_11464 PE=3 SV=1
          Length = 1037

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 23/68 (33%), Positives = 38/68 (55%)
 Frame = -3

Query: 253  ITKADIMSWYNTYLVQTSSSLRKLTVCVWGSNARAEQGANKVSKYAKDILIESVSEFKNK 74
            + K D++SWYNTY+  +S   R+L + V+G N+   + A    K    I I+ V   K  
Sbjct: 972  VRKEDVISWYNTYIKPSSPKRRRLAIHVYGCNSDIAEAAK--LKEQSWITIDDVKSLKKS 1029

Query: 73   SEYFPALC 50
            S+++ +LC
Sbjct: 1030 SQFYSSLC 1037


>tr|B7GEM5|B7GEM5_PHATR Predicted protein OS=Phaeodactylum tricornutum
            CCAP 1055/1 GN=PHATRDRAFT_50598 PE=4 SV=1
          Length = 1008

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/65 (29%), Positives = 35/65 (53%)
 Frame = -3

Query: 253  ITKADIMSWYNTYLVQTSSSLRKLTVCVWGSNARAEQGANKVSKYAKDILIESVSEFKNK 74
            +TK D++ + + +++ TS   RKL+V V+G N  A+            +L+ES ++F+  
Sbjct: 927  VTKLDVLRFLDRHVLATSPYRRKLSVQVFGQNHIADLLDKTDVAGDGIVLVESANDFRRS 986

Query: 73   SEYFP 59
               FP
Sbjct: 987  QALFP 991


>tr|B3L8U0|B3L8U0_PLAKH Myosin, putative OS=Plasmodium knowlesi
            (strain H) GN=PKH_122360 PE=4 SV=1
          Length = 1968

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = -3

Query: 226  YNTYLVQTSSSLRKLTVCVWGSNARAEQGANKVSKYAKDILIESVSEFKNKSEYFPAL 53
            Y+TY+V   SS  K+  C++GS+  AE+G   + K +  I++  V +  N     PAL
Sbjct: 1321 YDTYIVTHKSSSVKICDCMYGSSRSAEEGLFNLIKNSTCIVV--VFDSSNSDSIHPAL 1376