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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912537
Clone id YMU001_000020_A12
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGCCTAAAGGTTTACCACTTGGCAGATAATATATGTTGTGTTGCACATCCCATGTAGATG
GTAAACCAGTATGTAAGTCATTAAAAAAAACATTGATGTATTCTTGAAGAAACTCCTTCC
CTTGCAGAGACATCTTTAACTTGAGTATCCCTGACTTTGATGTCGTGCCTGTTAATCAAT
GCTACCTTCTAACAATGTGACATGGCCATTTGTGGAAGATTGAGCTTCTTAACTGAATTA
TAGTTAAGAAAATTCGTGATTTTCTCAAAAAGAAGGAAATTTGCTATAGTTAAGAAAATT
CATGATTTTCTTGAAAAAAAGGAACTTTGCTACAATTCTCTTGAATTTGTTGTAGCTTGT
TATGATTTCAATGAGGAACTTGAGAATCAATCTACGTGCACATTGTTATGCCCTTGTCTG
CACACAAATAACTACTTAAAAAAGATGGGCCTTCATTCTAACACAAATAATTAAACATCA
AGTACTTTAGTACACAATGTGATTTGCACTTGGGGGCCTAGGATTTGAGGCCAACAATG
■■Homology search results ■■ -
sp_hit_id Q6TND0
Definition sp|Q6TND0|MATK_DALWR Maturase K OS=Dalea wrightii
Align length 28
Score (bit) 30.8
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912537|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_A12.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6TND0|MATK_DALWR Maturase K OS=Dalea wrightii GN=matK PE=3 SV=1    31   4.4  
sp|Q6TND4|MATK_DALPU Maturase K OS=Dalea purpurea GN=matK PE=3 SV=1    31   4.4  
sp|P15804|CAPP3_SORBI Phosphoenolpyruvate carboxylase 3 OS=Sorgh...    30   7.5  

>sp|Q6TND0|MATK_DALWR Maturase K OS=Dalea wrightii GN=matK PE=3 SV=1
          Length = 512

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 369 EIITSYNKFKRIVAKFLFFKKIMNFLNY 286
           E+I SYNK + I A F FF+    +LNY
Sbjct: 122 EVIKSYNKLRSIHAIFPFFEDKFTYLNY 149


>sp|Q6TND4|MATK_DALPU Maturase K OS=Dalea purpurea GN=matK PE=3 SV=1
          Length = 509

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 369 EIITSYNKFKRIVAKFLFFKKIMNFLNY 286
           E+I SYNK + I A F FF+    +LNY
Sbjct: 119 EVIKSYNKLRSIHAIFPFFEDKFTYLNY 146


>sp|P15804|CAPP3_SORBI Phosphoenolpyruvate carboxylase 3 OS=Sorghum
           bicolor PE=1 SV=2
          Length = 960

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 262 FSKRRKFAIVKKIHDFLEKKELCYNSL 342
           FS+  + A+  KI +FLE  ELCY SL
Sbjct: 388 FSEISEDAVFTKIEEFLEPLELCYKSL 414
tr_hit_id O53026
Definition tr|O53026|O53026_ENTFA AS-48C1 protein OS=Enterococcus faecalis
Align length 69
Score (bit) 33.1
E-value 9.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912537|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_A12.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O53026|O53026_ENTFA AS-48C1 protein OS=Enterococcus faecalis ...    33   9.5  
tr|Q7YYI3|Q7YYI3_CRYPV Putative uncharacterized protein OS=Crypt...    33   9.5  
tr|Q5CX84|Q5CX84_CRYPV Putative uncharacterized protein OS=Crypt...    33   9.5  

>tr|O53026|O53026_ENTFA AS-48C1 protein OS=Enterococcus faecalis
           GN=as-48C1 PE=4 SV=1
          Length = 164

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -3

Query: 474 LIICVRMKAHLF*VVICVQTRA*QCARRLILKFLIEIITSYNKFKRIVAKFLFFKKIMNF 295
           +++   M A  F VV  + T         ++ FLI +I  +  FKR+    LF   I  F
Sbjct: 44  IVLVFFMSAPAFFVVTLILT--------CLIAFLITLINKFYSFKRVYLSTLFINSIQLF 95

Query: 294 LNYSKFPSF 268
           +N + F +F
Sbjct: 96  VNLALFSAF 104


>tr|Q7YYI3|Q7YYI3_CRYPV Putative uncharacterized protein
            OS=Cryptosporidium parvum GN=1MB.209 PE=4 SV=1
          Length = 1412

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 15/38 (39%), Positives = 27/38 (71%)
 Frame = +1

Query: 277  KFAIVKKIHDFLEKKELCYNSLEFVVACYDFNEELENQ 390
            KFA+  +I+  LEKK++   SLE+ +  YD +++LE++
Sbjct: 1197 KFAVKNRINFSLEKKQIILISLEYRIWKYDIHKQLESK 1234


>tr|Q5CX84|Q5CX84_CRYPV Putative uncharacterized protein
            OS=Cryptosporidium parvum Iowa II GN=cgd6_2100 PE=4 SV=1
          Length = 1645

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 15/38 (39%), Positives = 27/38 (71%)
 Frame = +1

Query: 277  KFAIVKKIHDFLEKKELCYNSLEFVVACYDFNEELENQ 390
            KFA+  +I+  LEKK++   SLE+ +  YD +++LE++
Sbjct: 1304 KFAVKNRINFSLEKKQIILISLEYRIWKYDIHKQLESK 1341