BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912544|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_B08.
         (361 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27557|VL1_HPV41 Major capsid protein L1 OS=Human papillomavi...    30   4.9  
sp|Q8WN22|PRKDC_CANFA DNA-dependent protein kinase catalytic sub...    29   6.4  
sp|Q9CZR8|EFTS_MOUSE Elongation factor Ts, mitochondrial OS=Mus ...    29   6.5  
sp|P43896|EFTS_BOVIN Elongation factor Ts, mitochondrial OS=Bos ...    29   8.4  

>sp|P27557|VL1_HPV41 Major capsid protein L1 OS=Human papillomavirus
           type 41 GN=L1 PE=3 SV=2
          Length = 534

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +3

Query: 216 HTMEPLSINDWH----NPPNWVSEELQKRGLSNA 305
           HTM+P  I DWH    +PPN V E+  +  LS A
Sbjct: 423 HTMDPSIIEDWHLAVTSPPNSVLEDHYRYILSIA 456


>sp|Q8WN22|PRKDC_CANFA DNA-dependent protein kinase catalytic
           subunit OS=Canis familiaris GN=PRKDC PE=2 SV=1
          Length = 4144

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 180 CRSHGPENQKEFLP*DMNNFACHTLLDLTRFPFKLLHSKVLNVPAQSCRHLRLSEALAMQ 1
           CR   PE   EF    + +FA   +L  TR P      K+L+V  ++ + ++  E + M+
Sbjct: 640 CRDILPEKHIEFFEPWVYSFAYELILQSTRLPLISGFYKLLSVAVRNAKKIKYFEGVGMK 699


>sp|Q9CZR8|EFTS_MOUSE Elongation factor Ts, mitochondrial OS=Mus
           musculus GN=Tsfm PE=2 SV=1
          Length = 324

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 243 DWHNPPNWVSEELQKRGLSNAGDRHGSQTHSALLDLIK 356
           D     +W+ ++ QK G S A   HG +T   L+ L++
Sbjct: 73  DLKQAEDWLHKQAQKEGWSKAAKLHGRKTKEGLIGLLQ 110


>sp|P43896|EFTS_BOVIN Elongation factor Ts, mitochondrial OS=Bos
           taurus GN=TSFM PE=1 SV=1
          Length = 338

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 243 DWHNPPNWVSEELQKRGLSNAGDRHGSQTHSALLDLIK 356
           D     +W+ ++ QK G S A   HG +T   L+ L++
Sbjct: 87  DLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQ 124

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912544|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_B08.
         (361 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6K249|Q6K249_ORYSJ Os02g0258800 protein OS=Oryza sativa subs...    34   3.2  
tr|Q46HP9|Q46HP9_PROMT Putative uncharacterized protein OS=Proch...    33   9.3  
tr|A2BZV1|A2BZV1_PROM1 Putative uncharacterized protein OS=Proch...    33   9.3  
tr|Q7NPI0|Q7NPI0_GLOVI Glr0075 protein OS=Gloeobacter violaceus ...    33   9.4  

>tr|Q6K249|Q6K249_ORYSJ Os02g0258800 protein OS=Oryza sativa subsp.
           japonica GN=B1178F07.4 PE=4 SV=1
          Length = 94

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +3

Query: 99  GPKAYGMQSYSYLTEGIPSGFQDHGNGKEGSGSSDFRL*HTMEPLSINDWHNPPNW-VSE 275
           GP   G+Q  +  T     G Q HG G  G G S FR+          ++   P W V  
Sbjct: 5   GPSVVGLQPKAEKTTAAAGGEQQHGGGGGGCGGSSFRMPLHYPRYKKAEYEAMPEWRVDC 64

Query: 276 ELQKRGLSNAGD 311
            L++ GL   GD
Sbjct: 65  LLREYGLPVDGD 76


>tr|Q46HP9|Q46HP9_PROMT Putative uncharacterized protein
           OS=Prochlorococcus marinus (strain NATL2A) GN=PMN2A_1491
           PE=4 SV=1
          Length = 523

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +2

Query: 56  FNTFEWRSLKGNLVRSKSVWHAKLFISYGRNSFWFSGPWERQGRLRVL 199
           FN F W      L+   + WH   FISYG  +FW    W   G  RVL
Sbjct: 224 FNNFSWSWFFYGLIPGFA-WHVWNFISYGSGAFWL---WWGDGAGRVL 267


>tr|A2BZV1|A2BZV1_PROM1 Putative uncharacterized protein
           OS=Prochlorococcus marinus (strain NATL1A)
           GN=NATL1_01971 PE=4 SV=1
          Length = 523

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +2

Query: 56  FNTFEWRSLKGNLVRSKSVWHAKLFISYGRNSFWFSGPWERQGRLRVL 199
           FN F W      L+   + WH   FISYG  +FW    W   G  RVL
Sbjct: 224 FNNFSWSWFFYGLIPGFA-WHVWNFISYGSGAFWL---WWGDGAGRVL 267


>tr|Q7NPI0|Q7NPI0_GLOVI Glr0075 protein OS=Gloeobacter violaceus
           GN=glr0075 PE=4 SV=1
          Length = 277

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +3

Query: 102 PKAYGMQSYS-YLTEGIPSGFQDHGNGKEGSGSSDFRL*HTMEPLSINDWHNPPNWVSEE 278
           PK    Q+ S +LT G PSG          S S ++ L  +   LS +D+   PNWVS +
Sbjct: 25  PKTSNAQTSSVHLTLGNPSGAVT-----STSYSYNYLLIKSQYALSYSDYDKIPNWVSWQ 79

Query: 279 LQKRGLSNAGDRHGSQTHSAL 341
           L    L +A  ++  +  SAL
Sbjct: 80  LNSSWLGSASRQNDFRPDSAL 100