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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912546
Clone id YMU001_000020_B10
Library
Length 483
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCGTCGCTGGTGGAGGTACGCTGCCCCGGCTGGGTAGAGGGCAAGCCCATTGAAGGGTA
TATGTACCCCGTGGAGCTGGTGGAGCCAGACCTGTGCATGCTAGGGGCGCCCATCACCGC
CTCCCAGCCCTTCTCCACCGTCTACCACCAGCCGGCCGGCCAAATTCAACTCTCCATCGC
CTCCGCCCGCTTCAATTGCACCGGCTAACCCCTTCCAACGAAGGTGCCCTATCCTACGCA
CTCTACAAGGTGCCCCATCTCTTCTACATTTATATACCCTTAGCAGCACTGCATTCTCAT
CTTACAGCCATAGCTTTGGCAACTCGTCAATGCCATACGTTAAGTGTAATTTTCCACCTC
TCTTCCCCGGGCTACCTTTCTGGTAAGCCAAGTGGGACTAGCACTGCGATGTTGTACCTT
CGCATCCCTCAACCCCCGTTCCTTCTGTAGCGTACAACATCAACAAGGTTTTGAGTTTAT
ATT
■■Homology search results ■■ -
sp_hit_id Q9I9B9
Definition sp|Q9I9B9|CTL1_TORMA Choline transporter-like protein 1 OS=Torpedo marmorata
Align length 57
Score (bit) 32.0
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912546|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_B10.
         (483 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9I9B9|CTL1_TORMA Choline transporter-like protein 1 OS=Torpe...    32   1.5  
sp|Q9EPS3|GLCE_MOUSE D-glucuronyl C5-epimerase OS=Mus musculus G...    30   7.5  
sp|O94923|GLCE_HUMAN D-glucuronyl C5-epimerase OS=Homo sapiens G...    30   7.5  
sp|O18756|GLCE_BOVIN D-glucuronyl C5-epimerase OS=Bos taurus GN=...    30   7.5  

>sp|Q9I9B9|CTL1_TORMA Choline transporter-like protein 1 OS=Torpedo
           marmorata GN=slc44a1 PE=1 SV=1
          Length = 646

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +1

Query: 226 ALSYALYKVPHLFYIYIPLAALHSHLTAIALATRQCHTLSVIFHLSSPGYLSGKPSG 396
           AL+ AL+ V    +I+IP     S  T +ALA    + ++V+  L++ GY   K  G
Sbjct: 308 ALTIALFHVAGKVFIHIPFLIFQSLWTFLALAFFWIYWIAVLLLLATAGYPQKKDQG 364


>sp|Q9EPS3|GLCE_MOUSE D-glucuronyl C5-epimerase OS=Mus musculus
           GN=Glce PE=1 SV=1
          Length = 618

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = +2

Query: 17  VRCPGWVEGKPI------EGYMYPVELVEPDLCMLGAPITASQPFSTVY 145
           V+C   VEG P+      +GY YP+++ +  L      +T   P   VY
Sbjct: 188 VKCISGVEGVPLSTQWGPQGYFYPIQIAQYGLSHYSKNLTEKPPHIEVY 236


>sp|O94923|GLCE_HUMAN D-glucuronyl C5-epimerase OS=Homo sapiens
           GN=GLCE PE=1 SV=2
          Length = 617

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = +2

Query: 17  VRCPGWVEGKPI------EGYMYPVELVEPDLCMLGAPITASQPFSTVY 145
           V+C   VEG P+      +GY YP+++ +  L      +T   P   VY
Sbjct: 188 VKCISGVEGVPLSTQWGPQGYFYPIQIAQYGLSHYSKNLTEKPPHIEVY 236


>sp|O18756|GLCE_BOVIN D-glucuronyl C5-epimerase OS=Bos taurus
           GN=GLCE PE=1 SV=2
          Length = 617

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = +2

Query: 17  VRCPGWVEGKPI------EGYMYPVELVEPDLCMLGAPITASQPFSTVY 145
           V+C   VEG P+      +GY YP+++ +  L      +T   P   VY
Sbjct: 187 VKCISGVEGVPLSTQWGPQGYFYPIQIAQYGLSHYSKNLTEKPPHIEVY 235
tr_hit_id B3C6Z6
Definition tr|B3C6Z6|B3C6Z6_9BACE Putative uncharacterized protein OS=Bacteroides intestinalis DSM 17393
Align length 45
Score (bit) 33.5
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912546|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_B10.
         (483 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3C6Z6|B3C6Z6_9BACE Putative uncharacterized protein OS=Bacte...    33   5.3  
tr|Q0RZC7|Q0RZC7_RHOSR Possible dehydrogenase OS=Rhodococcus sp....    33   9.2  

>tr|B3C6Z6|B3C6Z6_9BACE Putative uncharacterized protein
           OS=Bacteroides intestinalis DSM 17393 GN=BACINT_00686
           PE=4 SV=1
          Length = 619

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = -1

Query: 156 AGWW*TVEKGWEAVMGAPSMHRSGSTSSTGYIYPSMGLPSTQPGQ 22
           AG    +   WE V   P  H    T   GY YP MG     PGQ
Sbjct: 83  AGLHLVITSEWENVKWRPLTHCPSLTDENGYFYPMMGPNPAYPGQ 127


>tr|Q0RZC7|Q0RZC7_RHOSR Possible dehydrogenase OS=Rhodococcus sp.
           (strain RHA1) GN=RHA1_ro08315 PE=4 SV=1
          Length = 519

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 89  DLCMLGAPITASQPFSTVYHQPAGQIQLSIASARFNCTG*PLPTKVPYP 235
           DLC    P+ A+ PF T +  PA  +QL++ +A +       P  + YP
Sbjct: 59  DLCSAVHPMAAASPFFTAFDLPARGVQLNVPAASYAHPLDHRPAGIAYP 107