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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912547
Clone id YMU001_000020_B11
Library
Length 515
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATCCCAAATAGCTTAGCTGGCTTAGCAAGTTTCATTAACCCATCAATCGAAGATTATCC
ACTCTAATTTTACTAAAAAATTCTGGAGTTCCCTTCCTTTGTCTCTGCTCGAAGCCATAT
TCCTAGGGGTTGACCTAGGGCACTTAGAAGCAGCCCAAATGCACTTAAATGCAACAAAGA
TTTGTATGTTCCCTTGGCTTGTTTTTAACCCATCCAATCTCTATTCAAAAAAGTGAAATC
TTCTGCTTCCCTTGATACCTGGCATACAACTAGTATTTGTTACATGATATTGGACATTAC
TGGAGCTTGGTAAGATGTGCACCTTCATACATATACACATATTTCATGACACACACGCGT
GCGCATGAAATCTGGTTATAAGATAAGAATGATTACTAATTATGCACATACAAAAAAGTG
CAAATAAGTAACAAGACATTCGAACAAGGAATAACATGACAAACAATGAGAAGCATACGC
TGATTTTATACTCGATGGCACCTTCCTTTCTCCAC
■■Homology search results ■■ -
sp_hit_id Q95J56
Definition sp|Q95J56|DJC14_BOVIN DnaJ homolog subfamily C member 14 OS=Bos taurus
Align length 31
Score (bit) 30.8
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912547|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_B11.
         (515 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q95J56|DJC14_BOVIN DnaJ homolog subfamily C member 14 OS=Bos ...    31   3.9  
sp|Q6Y2X3|DJC14_HUMAN DnaJ homolog subfamily C member 14 OS=Homo...    30   6.7  

>sp|Q95J56|DJC14_BOVIN DnaJ homolog subfamily C member 14 OS=Bos
           taurus GN=DNAJC14 PE=1 SV=1
          Length = 699

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 331 CMKVHILPSSSNVQYHVTNTSCMPGIKGSRR 239
           C +V I P +  V YH++  S MPG  G +R
Sbjct: 600 CQRVGISPDTHRVPYHISFGSRMPGTSGRQR 630


>sp|Q6Y2X3|DJC14_HUMAN DnaJ homolog subfamily C member 14 OS=Homo
           sapiens GN=DNAJC14 PE=2 SV=2
          Length = 702

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 331 CMKVHILPSSSNVQYHVTNTSCMPGIKGSRR 239
           C +V I P +  V YH++  S +PG +G +R
Sbjct: 603 CQRVGISPDTHRVPYHISFGSRIPGTRGRQR 633
tr_hit_id B6PTE1
Definition tr|B6PTE1|B6PTE1_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae
Align length 71
Score (bit) 36.2
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912547|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_B11.
         (515 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6PTE1|B6PTE1_BRAFL Putative uncharacterized protein (Fragmen...    36   0.98 
tr|B0WVP2|B0WVP2_CULQU PugilistDominant (Fragment) OS=Culex quin...    34   3.7  
tr|B4HXZ9|B4HXZ9_DROSE GM13734 OS=Drosophila sechellia GN=GM1373...    34   4.9  

>tr|B6PTE1|B6PTE1_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_132823 PE=4 SV=1
          Length = 354

 Score = 36.2 bits (82), Expect = 0.98
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 484 ISVCFSLFVMLFL-VRMSCYLFALFCMCIISNHSYLITRFHAHACVS*NMCICMKVHILP 308
           + VC   ++ LFL V M CYLF   CMC     SYL  +      +   +C+C  V +L 
Sbjct: 205 LQVCMCCYLPLFLQVCMCCYLFLQVCMC-----SYLFLQVCMCCYLFLQVCMC-HVLLLY 258

Query: 307 SSSNVQYHVTN 275
            + +V  HVT+
Sbjct: 259 RTRHVPVHVTS 269


>tr|B0WVP2|B0WVP2_CULQU PugilistDominant (Fragment) OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ011068 PE=4 SV=1
          Length = 524

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 475 CFSLFVMLFLVRMSCYLFALFCMCIISNHSYLITRF 368
           CF  FV  FL  + C+LF +F   ++ NH++ +  F
Sbjct: 407 CFLFFVFCFLFFVFCFLFFVFFFFVLKNHNFFVFCF 442


>tr|B4HXZ9|B4HXZ9_DROSE GM13734 OS=Drosophila sechellia GN=GM13734
           PE=4 SV=1
          Length = 226

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = -2

Query: 511 RKEGAIEYKIS---VCFSLFVMLFLVRMSCYLFALFCMCIISNHSYLITRFHAHACVS*N 341
           RKE     ++S   +C S F   F +   C     FC      H+Y  T  + HACV   
Sbjct: 133 RKESQAATQVSAIRICNSPFP--FFIHCRCQKILAFCNMARERHTYKQTYTYIHACV--- 187

Query: 340 MCICMKVHILPSSSNVQYHVTNT 272
            C+C   +++   ++V   +TN+
Sbjct: 188 -CVCPCKNLVCLGTSVPVKLTNS 209