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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912549
Clone id YMU001_000020_C01
Library
Length 381
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCCAAGTTTGTATGCTCATAGCATAAGCCGAACGTGGGAATTGTCCATGCAATATACCTC
GCTTGAAGCCTTGCTTCGCATGAAGAATGTTGTGATACTAGACGATGAAGTCAGATGTAG
AGACACAGATAGCATGACAAAAAGCATCGACCTTGTTGAGTGATTTCAATTGAAAATAAC
CAGTCTTGTGTGGCAAACATCCCCTGCCCGCTTCAAGAAACAGTGACACGAAGTCGGCCA
TGCCGAGCAACATGCCCCCCCCGCATCAAGTCTAGCAGTAGGATGTGCCAATCTCCTCGA
GATTCTAAAGCATCGCGAATTTGCTATGCTTTTGCATCAAAGTAAACCGTTGAGAAGCCG
TGCTTTGGAGCCAAGTGGTTG
■■Homology search results ■■ -
sp_hit_id Q5SS00
Definition sp|Q5SS00|ZDBF2_MOUSE DBF4-type zinc finger-containing protein 2 homolog OS=Mus musculus
Align length 43
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912549|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_C01.
         (381 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5SS00|ZDBF2_MOUSE DBF4-type zinc finger-containing protein 2...    32   1.3  
sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein ...    32   1.3  
sp|Q6CNF3|NDC80_KLULA Probable kinetochore protein NDC80 OS=Kluy...    30   2.8  
sp|Q8S4P6|EZ1_MAIZE Histone-lysine N-methyltransferase EZ1 OS=Ze...    30   4.8  
sp|Q69Z28|ATS16_MOUSE A disintegrin and metalloproteinase with t...    30   4.8  
sp|Q8TE57|ATS16_HUMAN A disintegrin and metalloproteinase with t...    30   4.8  
sp|Q9H324|ATS10_HUMAN A disintegrin and metalloproteinase with t...    30   4.8  
sp|P42231|STA5A_SHEEP Signal transducer and activator of transcr...    30   4.8  
sp|Q03350|TSP2_MOUSE Thrombospondin-2 OS=Mus musculus GN=Thbs2 P...    29   6.3  
sp|P53114|MED5_YEAST Mediator of RNA polymerase II transcription...    29   6.3  
sp|P35442|TSP2_HUMAN Thrombospondin-2 OS=Homo sapiens GN=THBS2 P...    29   8.2  
sp|P59511|ATS20_MOUSE A disintegrin and metalloproteinase with t...    29   8.2  
sp|A4YSR9|Y3147_BRASO UPF0178 protein BRADO3147 OS=Bradyrhizobiu...    29   8.2  

>sp|Q5SS00|ZDBF2_MOUSE DBF4-type zinc finger-containing protein 2
            homolog OS=Mus musculus GN=Zdbf2 PE=2 SV=1
          Length = 2493

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
 Frame = +1

Query: 187  CVANIPCPLQETVTRSRPC-----RATCPPRIKSSSRMCQSPR 300
            C    PCP +   T   PC     RA CPPR   S R    PR
Sbjct: 2288 CTPRAPCPPRALCTPRAPCPPRALRAPCPPRALCSPRAPCPPR 2330



 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 184  SCVANIPCPLQETVTRSRPC--RATCPPRIKSSSRMCQSPR 300
            SC    PCP +       PC  RA CPPR     R   +PR
Sbjct: 2239 SCPPRAPCPPRALCPPRAPCPPRALCPPRAPCPPRALCTPR 2279



 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
 Frame = +1

Query: 187  CVANIPCPLQETVTRSRPC--------RATCPPRIKSSSRMCQSPRDSKA 312
            C    PCP +   T   PC        RA CPPR   + R    PR  +A
Sbjct: 2264 CPPRAPCPPRALCTPRAPCPPRALCTPRAPCPPRALCTPRAPCPPRALRA 2313


>sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2
            OS=Homo sapiens GN=SRRM2 PE=1 SV=2
          Length = 2752

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 181  QSCVANIPCPLQETVTRSR-PCRATCPPRIKSSSRMCQSPRDSKA 312
            +SC  + P P  ++ T SR  C  + PPR+KSS+   QSP  S +
Sbjct: 870  RSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSS 914


>sp|Q6CNF3|NDC80_KLULA Probable kinetochore protein NDC80
           OS=Kluyveromyces lactis GN=NDC80 PE=3 SV=1
          Length = 673

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/53 (32%), Positives = 33/53 (62%)
 Frame = +2

Query: 38  ELSMQYTSLEALLRMKNVVILDDEVRCRDTDSMTKSIDLVE*FQLKITSLVWQ 196
           ++S+Q   L ++L+ KN+   + E + +++DS++KS+D V     + T LV Q
Sbjct: 386 QVSLQIDELTSVLKRKNISGEEIEHKNKESDSISKSLDTVSSRLDQFTGLVRQ 438


>sp|Q8S4P6|EZ1_MAIZE Histone-lysine N-methyltransferase EZ1 OS=Zea
           mays GN=EZ1 PE=2 SV=1
          Length = 931

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
 Frame = +1

Query: 163 ISIENNQSCVANIPCPLQETVTRSRPCRAT---------CPPRIKSSSRMCQSPRDSKAS 315
           I+   +Q C    PC  Q T  +  PC +          CP   K+  R C   +    S
Sbjct: 667 ITERKDQPCRQYNPCGCQSTCGKQCPCLSNGTCCEKYCGCPKICKNRFRGCHCAKSQCRS 726

Query: 316 RICYAFAS 339
           R C  FA+
Sbjct: 727 RQCPCFAA 734


>sp|Q69Z28|ATS16_MOUSE A disintegrin and metalloproteinase with
           thrombospondin motifs 16 OS=Mus musculus GN=Adamts16
           PE=2 SV=2
          Length = 1222

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 238 PCRATCPPRIKSSSRMCQSPRDSKASRIC 324
           PC  TC   I    R+C +PR S   + C
Sbjct: 595 PCSRTCGGGISHRDRLCTNPRPSHGGKFC 623


>sp|Q8TE57|ATS16_HUMAN A disintegrin and metalloproteinase with
           thrombospondin motifs 16 OS=Homo sapiens GN=ADAMTS16
           PE=1 SV=2
          Length = 1224

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 238 PCRATCPPRIKSSSRMCQSPRDSKASRIC 324
           PC  TC   +   SR+C +P+ S   + C
Sbjct: 597 PCSRTCGGGVSHRSRLCTNPKPSHGGKFC 625


>sp|Q9H324|ATS10_HUMAN A disintegrin and metalloproteinase with
           thrombospondin motifs 10 OS=Homo sapiens GN=ADAMTS10
           PE=1 SV=2
          Length = 1103

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 241 CRATCPPRIKSSSRMCQSPRDSKASRIC 324
           C  TC   + SSSR C SPR +   + C
Sbjct: 559 CSRTCGGGVSSSSRHCDSPRPTIGGKYC 586


>sp|P42231|STA5A_SHEEP Signal transducer and activator of
           transcription 5A OS=Ovis aries GN=STAT5A PE=1 SV=2
          Length = 794

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
 Frame = +2

Query: 38  ELSMQYTSLEALLRMKNVVILDDEV-------RCRDTDSMTKSIDLVE*FQLKITSLVWQ 196
           EL+ ++     LLR +  +ILDDE+         R  ++  +S+D+++ +  K+  ++WQ
Sbjct: 229 ELAEKHQKTLQLLRKQQTIILDDELIQWKRRHDWRGMEAPPRSLDVLQSWCEKLAEIIWQ 288


>sp|Q03350|TSP2_MOUSE Thrombospondin-2 OS=Mus musculus GN=Thbs2 PE=2
           SV=1
          Length = 1172

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +1

Query: 202 PCPLQETVTRSRP---CRATCPPRIKSSSRMCQSPRDSKASRIC 324
           PCP+    +   P   C  TC   I+  SR+C SP      + C
Sbjct: 490 PCPIDGRWSPWSPWSACTVTCAGGIRERSRVCNSPEPQYGGKDC 533


>sp|P53114|MED5_YEAST Mediator of RNA polymerase II transcription
            subunit 5 OS=Saccharomyces cerevisiae GN=NUT1 PE=1 SV=1
          Length = 1132

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 290  NLLEILKHREFAMLLHQSKPLRSRALE 370
            N + ILK   FA+LLH+ K L   ALE
Sbjct: 1078 NKISILKRHSFAVLLHERKLLNDLALE 1104
tr_hit_id A7SZ33
Definition tr|A7SZ33|A7SZ33_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 72
Score (bit) 39.7
E-value 0.077
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912549|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_C01.
         (381 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7SZ33|A7SZ33_NEMVE Predicted protein (Fragment) OS=Nematoste...    40   0.077
tr|Q1DAR3|Q1DAR3_MYXXD Conserved domain protein OS=Myxococcus xa...    34   3.2  
tr|B3LF40|B3LF40_TETNG SCO-spondin OS=Tetraodon nigroviridis GN=...    33   7.2  
tr|A4H3B7|A4H3B7_LEIBR Phosphoglycan beta 1,3 galactosyltransfer...    33   9.1  
tr|A7T3K8|A7T3K8_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   9.4  

>tr|A7SZ33|A7SZ33_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g138675 PE=4 SV=1
          Length = 360

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +1

Query: 160 VISIENNQSCVANIPCPLQ---ETVTRSRPCRATCPPRIKSSSRMCQSPRDSKASRICYA 330
           V +IE N S     PCP+     + T   PC  TC   + + SR C  P      R C  
Sbjct: 111 VDTIECNTS-----PCPVDGGYTSWTEFSPCSVTCGRGLSTRSRACSEPAPQYGGRNCSE 165

Query: 331 FASK*TVEKPCF 366
           F    T E PCF
Sbjct: 166 FLGPNTEEVPCF 177


>tr|Q1DAR3|Q1DAR3_MYXXD Conserved domain protein OS=Myxococcus
           xanthus (strain DK 1622) GN=MXAN_2031 PE=4 SV=1
          Length = 395

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 181 QSCVANIPCPLQETVTRSRPCRATCPPRIKSSSRMCQSPRDSKASRIC 324
           Q+CVAN  CP  +  T    CR   PP    +   CQ+  D  +  +C
Sbjct: 279 QTCVANCDCPSGDVCTNGY-CRPPAPPPDAGTGTACQANCDCPSGEVC 325


>tr|B3LF40|B3LF40_TETNG SCO-spondin OS=Tetraodon nigroviridis
            GN=scospondin PE=2 SV=1
          Length = 5064

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 154  C*VISIENNQSCVANIPCPLQETVTRSRPCRATCPPRIKSSSRMCQS 294
            C     EN       +PCP+ E      PC  +C    +S +R+CQ+
Sbjct: 4668 CNTCVCENGTLACTKLPCPVYEPWRPWNPCSVSCGNGTRSRTRLCQA 4714


>tr|A4H3B7|A4H3B7_LEIBR Phosphoglycan beta 1,3
           galactosyltransferase-like protein OS=Leishmania
           braziliensis GN=LbrM02_V2.0240 PE=4 SV=1
          Length = 1067

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 211 AGRGCLPHKTGYFQLKSLNKVDAFCHAICVSTSDFIV*YHNILH 80
           A  GC+  +TG+  ++S       C A CVS  DF   +H   H
Sbjct: 2   AANGCVAERTGHIAMRS-------CEAACVSVLDFACTWHRFTH 38


>tr|A7T3K8|A7T3K8_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g919 PE=4 SV=1
          Length = 240

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
 Frame = +1

Query: 238 PCRATCPPRIKSSSRMCQSPR----------DSKASRIC 324
           PC  TCP RI+S S+ C  P           D K  R+C
Sbjct: 128 PCNVTCPGRIQSRSKKCLDPEGRLDGSVCRGDDKMERVC 166