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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912552
Clone id YMU001_000020_C04
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGTAGGTGAAGCCTATGATAGAAAGGATATAGATCAAGGTAATGGTCCTCTTAGGACAGG
GAAGGGAGTCTATGAAATGGAGGAGCTTCATGGAGGGGATGATTCGCATAGACCAACAAA
TGGTGTCAATTGCGAGCCCATGGTTGATGTCAAGCCTGATGTTAAGGTGCACAGATTTTT
GGATTTGAATGTAGCAGCTCCCATGATAGGCGGACTAGATGATGGTTGCAGCAAGGTCTA
CAATCACTCCTTGCCTTTCATGGTTGAGAAATTTGAAAACAGTGGTGATGATGGTTCTAC
TAGTGGTAGTCCAAAAACATCGATGGAATGGCCGAGACGGTGAGGACAACGTGCCCCGTG
GTTACTTCCTTTCATGTAAAATTAATGGGTATAGCTAACCTTACGTCCTTAGCTAAGAAC
GCTAGCTTTGGCTATGCCCTAAAACAAAATACTCAATTCGACGTCTGATTTACATTGAGG
CTCC
■■Homology search results ■■ -
sp_hit_id P43428
Definition sp|P43428|G6PC_RAT Glucose-6-phosphatase OS=Rattus norvegicus
Align length 111
Score (bit) 32.7
E-value 0.88
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912552|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_C04.
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P43428|G6PC_RAT Glucose-6-phosphatase OS=Rattus norvegicus GN...    33   0.88 
sp|P0AAS5|YLBF_ECOLI Uncharacterized protein ylbF OS=Escherichia...    31   2.6  
sp|P0AAS6|YLBF_ECO57 Uncharacterized protein ylbF OS=Escherichia...    31   2.6  
sp|P35576|G6PC_MOUSE Glucose-6-phosphatase OS=Mus musculus GN=G6...    30   4.4  
sp|Q7U899|HIS52_SYNPX Imidazole glycerol phosphate synthase subu...    29   9.8  

>sp|P43428|G6PC_RAT Glucose-6-phosphatase OS=Rattus norvegicus
           GN=G6pc PE=2 SV=1
          Length = 357

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 29/111 (26%), Positives = 44/111 (39%)
 Frame = -1

Query: 352 TLSSPSRPFHRCFWXXXXXXXXXTVFKFLNHERQGVIVDLAATII*SAYHGSCYIQIQKS 173
           TL    R   R  W         ++FK L     G ++ L   +  S Y  SC  +++KS
Sbjct: 237 TLEKAKRWCERPEWVHLDTTPFASLFKNL-----GTLLGLGLALNSSMYRKSCKGELRKS 291

Query: 172 VHLNIRLDINHGLAIDTICWSMRIIPSMKLLHFIDSLPCPKRTITLIYILS 20
           +   +                  I+ S+ LLH  DSL  P +  ++ YILS
Sbjct: 292 LPFRLAC----------------IVASLGLLHLFDSLKPPSQIESIFYILS 326


>sp|P0AAS5|YLBF_ECOLI Uncharacterized protein ylbF OS=Escherichia
           coli (strain K12) GN=ylbF PE=4 SV=1
          Length = 271

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 85  LLHFIDSLPCPKRTITLIYILSIIGFT 5
           LLHF+ +L CPKRT   I  L  +G T
Sbjct: 225 LLHFVHALSCPKRTAVAIDSLLALGHT 251


>sp|P0AAS6|YLBF_ECO57 Uncharacterized protein ylbF OS=Escherichia
           coli O157:H7 GN=ylbF PE=4 SV=1
          Length = 271

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 85  LLHFIDSLPCPKRTITLIYILSIIGFT 5
           LLHF+ +L CPKRT   I  L  +G T
Sbjct: 225 LLHFVHALSCPKRTAVAIDSLLALGHT 251


>sp|P35576|G6PC_MOUSE Glucose-6-phosphatase OS=Mus musculus GN=G6pc
           PE=2 SV=1
          Length = 357

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 29/111 (26%), Positives = 40/111 (36%)
 Frame = -1

Query: 352 TLSSPSRPFHRCFWXXXXXXXXXTVFKFLNHERQGVIVDLAATII*SAYHGSCYIQIQKS 173
           TL    R   R  W         ++FK L     G ++ L   +  S Y  SC  ++ KS
Sbjct: 237 TLEKAKRWCERPEWVHLDTTPFASLFKNL-----GTLLGLGLALNSSMYRKSCKGELSKS 291

Query: 172 VHLNIRLDINHGLAIDTICWSMRIIPSMKLLHFIDSLPCPKRTITLIYILS 20
                                  I+ S+ LLH  DSL  P +   + YILS
Sbjct: 292 FPFRFAC----------------IVASLVLLHLFDSLKPPSQVELIFYILS 326


>sp|Q7U899|HIS52_SYNPX Imidazole glycerol phosphate synthase subunit
           hisH 2 OS=Synechococcus sp. (strain WH8102) GN=hisH2
           PE=3 SV=1
          Length = 212

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +2

Query: 179 LDLNVAAPMIGGLDDGCSKVYNHSLPFMVEKFENSGDDGSTSGSPKTSMEWPRR*G 346
           LDL  A PM+   D      + HS   + E+ E      S   S  T+M W RR G
Sbjct: 126 LDLRRANPMLAAADPLAWVYFVHSYAAVPERPETLAAAASFGSSSVTAMVWQRRLG 181
tr_hit_id A6QXZ9
Definition tr|A6QXZ9|A6QXZ9_AJECN Inositolphosphorylceramide-B C-26 hydroxylase OS=Ajellomyces capsulata (strain NAm1 / WU24)
Align length 67
Score (bit) 34.3
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912552|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_C04.
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6QXZ9|A6QXZ9_AJECN Inositolphosphorylceramide-B C-26 hydroxy...    34   3.1  
tr|B4FZE7|B4FZE7_MAIZE Putative uncharacterized protein OS=Zea m...    34   4.1  
tr|A4SBL0|A4SBL0_OSTLU Pentatrichopeptide repeat (PPR) protein O...    34   4.1  
tr|A4S6W4|A4S6W4_OSTLU Predicted protein (Fragment) OS=Ostreococ...    34   4.1  
tr|B7P794|B7P794_IXOSC Microtubule-associated protein CP224, put...    33   7.0  
tr|O90689|O90689_EBVG Latent membrane protein 1 (Fragment) OS=Ep...    33   9.1  
tr|Q7TP38|Q7TP38_RAT Ab2-371 OS=Rattus norvegicus PE=2 SV=1            33   9.1  
tr|B8C3Q7|B8C3Q7_THAPS Predicted protein OS=Thalassiosira pseudo...    33   9.2  

>tr|A6QXZ9|A6QXZ9_AJECN Inositolphosphorylceramide-B C-26
           hydroxylase OS=Ajellomyces capsulata (strain NAm1 /
           WU24) GN=HCAG_02256 PE=4 SV=1
          Length = 385

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = +2

Query: 38  GNGPLRTGKGVYEMEELHGGDDSHRPT---NGVNCEPMVDVKPDV----KVHRFLDLNVA 196
           GNG    G    +   + G  DS +PT    G++ E  ++V+ D+    + H+FLDLN  
Sbjct: 94  GNGDAAAGAAAAKGSNMDGATDSPKPTYSSTGMSSEEDLNVETDLTADYRTHKFLDLN-- 151

Query: 197 APMIGGL 217
            P+ G L
Sbjct: 152 RPLFGQL 158


>tr|B4FZE7|B4FZE7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 426

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -1

Query: 202 GSCYIQIQKSVHLNIRLDINHGLAIDTICWSMRIIPSMK---LLHFIDSLPCPKRTITLI 32
           G   I   KS +  IR  + H + ID   W +  +PS +   LLH ++S+    + +  I
Sbjct: 329 GGFNISPLKSRNGRIRTQVQHLMQIDLKGWGVGYVPSFQQHCLLHMLNSVAGTNKLLNKI 388

Query: 31  YILSIIGF 8
           Y++S++ F
Sbjct: 389 YMVSLLIF 396


>tr|A4SBL0|A4SBL0_OSTLU Pentatrichopeptide repeat (PPR) protein
           OS=Ostreococcus lucimarinus (strain CCE9901) GN=PPR3_21
           PE=4 SV=1
          Length = 629

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
 Frame = +2

Query: 29  IDQGNGPLRTGKGVYEMEELHGGDDSHRPTNGVNCEPMVDVKPDVKVHRFLDLNVAAPMI 208
           +D+ N  +   KGV++ +   GG+   +           D++P       L+      + 
Sbjct: 493 LDRINPEMTQRKGVWKRD---GGEPKPKSNRAAAAAADEDLEPST-----LEPTKTKEIY 544

Query: 209 GGLDDGCSKVYNHSLPFMVEKFENSGDDGSTSG--SPKTSMEWPRR*GQRA 355
           GG +    +V   SL   VE  +   DDG T    +P  S +WPR+   RA
Sbjct: 545 GGPESTARRV---SLSQRVESLDEDDDDGDTGAVDAPPASSDWPRKVSTRA 592


>tr|A4S6W4|A4S6W4_OSTLU Predicted protein (Fragment) OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_89032 PE=4 SV=1
          Length = 683

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
 Frame = +2

Query: 29  IDQGNGPLRTGKGVYEMEELHGGDDSHRPTNGVNCEPMVDVKPDVKVHRFLDLNVAAPMI 208
           +D+ N  +   KGV++ +   GG+   +           D++P       L+      + 
Sbjct: 547 LDRINPEMTQRKGVWKRD---GGEPKPKSNRAAAAAADEDLEPST-----LEPTKTKEIY 598

Query: 209 GGLDDGCSKVYNHSLPFMVEKFENSGDDGSTSG--SPKTSMEWPRR*GQRA 355
           GG +    +V   SL   VE  +   DDG T    +P  S +WPR+   RA
Sbjct: 599 GGPESTARRV---SLSQRVESLDEDDDDGDTGAVDAPPASSDWPRKVSTRA 646


>tr|B7P794|B7P794_IXOSC Microtubule-associated protein CP224, putative
            (Fragment) OS=Ixodes scapularis GN=IscW_ISCW000916 PE=4
            SV=1
          Length = 1763

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 372  KGSNHGARCPHRLGHSIDVFGLPLVEPSSPL 280
            K +   A C   LGH ++VFG+ + EPS P+
Sbjct: 1325 KNARQRAECLEELGHLVEVFGVSVCEPSPPV 1355


>tr|O90689|O90689_EBVG Latent membrane protein 1 (Fragment)
           OS=Epstein-Barr virus (strain GD1) GN=LMP-1 PE=4 SV=1
          Length = 69

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 8   EAYDRKDIDQGNGPLRTGKGVYEMEELHGGDDSHRPT 118
           E  + K  DQG  P+  G G +  +  HGG D H PT
Sbjct: 8   EEVENKQGDQGPPPMTDGGGGHSHDSGHGGGDPHLPT 44


>tr|Q7TP38|Q7TP38_RAT Ab2-371 OS=Rattus norvegicus PE=2 SV=1
          Length = 1640

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 29/111 (26%), Positives = 44/111 (39%)
 Frame = -1

Query: 352  TLSSPSRPFHRCFWXXXXXXXXXTVFKFLNHERQGVIVDLAATII*SAYHGSCYIQIQKS 173
            TL    R   R  W         ++FK L     G ++ L   +  S Y  SC  +++KS
Sbjct: 1449 TLEKAKRWCERPEWVHLDTTPFASLFKNL-----GTLLGLGLALNSSMYRKSCKGELRKS 1503

Query: 172  VHLNIRLDINHGLAIDTICWSMRIIPSMKLLHFIDSLPCPKRTITLIYILS 20
            +   +                  I+ S+ LLH  DSL  P +  ++ YILS
Sbjct: 1504 LPFRLAC----------------IVASLGLLHLFDSLKPPSQIESIFYILS 1538


>tr|B8C3Q7|B8C3Q7_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_5728 PE=4 SV=1
          Length = 849

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -3

Query: 191 HSNPKICAP*HQA*HQPWARN*HHLLVYANHPLHEAPPFHRLPSLS*EDHYLDLYP 24
           H  P +  P HQA   P A N HH+  ++  P+H  PP+          HY   YP
Sbjct: 205 HGTPVMRHPYHQAQVHPHAPNPHHVATHS--PMHHQPPYPM--------HYHQYYP 250