BP912555 |
Clone id |
YMU001_000020_C07 |
Library |
YMU01 |
Length |
559 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000020_C07. |
Accession |
BP912555 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL823Contig1 |
Sequence |
GAGATATTACCTGCAGGTACTCAGTCCCTATATGCCTCAAGTTTGTCCCTCTCTTCCTGT AAGAATCTCTTTGACAAACGCCGAGGCTTTCCAAGAGACCCTCGTATTACACCCCATTCA GCTCGAGTAAGCCTTGGCACATGACCAAGTCCTGCATGATTGAGGTATTCAACAAACTCG TTCCTTGCAAACCATGGAAGATCAATCGCACTATAAAACCATTCATAGATACACCACCGC CTAACTTTCTCAGATGAGAGGCAATGAGTAAGCCTAACCTTATTACTATATTTCTCTTCT GCCACCACTGCATGTGAGCAATGACAAGTGGCTACTGATAGTGCAGAAGACTTGGACTTC TGCCTGCTTCTTTGTTTTCTAAAAGTGTAGTTCATTCTTTCTACTGCAGGACCTATCTCT ACTTCTGATTCACCAATAACCACATCTTGTCGATCAAGCTCTTGATCCGGCTCCTGTTTA ACGGGCTTCGCTGCGTACTTGCCTAGGGTTTGTCCCTGCACAACTCGTTTCAGCTTGGTA CGAGCCATCAGATCTTCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8C735 |
Definition |
sp|Q8C735|LIN9_MOUSE Lin-9 homolog OS=Mus musculus |
Align length |
95 |
Score (bit) |
75.1 |
E-value |
2.0e-13 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RVZ7 |
Definition |
tr|A9RVZ7|A9RVZ7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
99 |
Score (bit) |
161.0 |
E-value |
3.0e-38 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912555|Adiantum capillus-veneris mRNA, clone: YMU001_000020_C07. (559 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RVZ7|A9RVZ7_PHYPA Predicted protein OS=Physcomitrella paten... 161 3e-38 tr|Q6AUE7|Q6AUE7_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 146 8e-34 tr|Q10G93|Q10G93_ORYSJ DIRP family protein, expressed OS=Oryza s... 146 8e-34 tr|Q10G92|Q10G92_ORYSJ DIRP family protein, expressed OS=Oryza s... 146 8e-34 tr|Q0DQ40|Q0DQ40_ORYSJ Os03g0639200 protein OS=Oryza sativa subs... 146 8e-34 tr|B8AN37|B8AN37_ORYSI Putative uncharacterized protein OS=Oryza... 146 8e-34 tr|Q9LIF3|Q9LIF3_ARATH Genomic DNA, chromosome 3, P1 clone:MHC9 ... 145 2e-33 tr|Q6A332|Q6A332_ARATH Always early protein 3 OS=Arabidopsis tha... 145 2e-33 tr|Q0WLW8|Q0WLW8_ARATH Putative uncharacterized protein At3g2143... 145 2e-33 tr|A7NW60|A7NW60_VITVI Chromosome chr5 scaffold_2, whole genome ... 143 5e-33 tr|A5AVL5|A5AVL5_VITVI Putative uncharacterized protein OS=Vitis... 143 5e-33 tr|Q6A331|Q6A331_ARATH Always early 1 protein OS=Arabidopsis tha... 142 2e-32 tr|Q5SNG2|Q5SNG2_ORYSJ Always early 1 protein-like OS=Oryza sati... 130 5e-29 tr|Q0JPY1|Q0JPY1_ORYSJ Os01g0193900 protein (Fragment) OS=Oryza ... 130 5e-29 tr|B8ADQ4|B8ADQ4_ORYSI Putative uncharacterized protein OS=Oryza... 130 5e-29 tr|A2ZQ81|A2ZQ81_ORYSJ Putative uncharacterized protein OS=Oryza... 130 5e-29 tr|A9SYB3|A9SYB3_PHYPA Predicted protein OS=Physcomitrella paten... 129 1e-28 tr|A7PS74|A7PS74_VITVI Chromosome chr14 scaffold_27, whole genom... 126 7e-28 tr|Q9MA51|Q9MA51_ARATH F22F7.18 protein OS=Arabidopsis thaliana ... 126 9e-28 tr|Q8RXZ0|Q8RXZ0_ARATH Putative uncharacterized protein At3g0538... 126 9e-28 tr|Q6A333|Q6A333_ARATH Always early 2 protein OS=Arabidopsis tha... 126 9e-28 tr|Q4RR02|Q4RR02_TETNG Chromosome 14 SCAF15003, whole genome sho... 77 5e-13 tr|B1H1U1|B1H1U1_XENLA LOC100158306 protein OS=Xenopus laevis GN... 75 2e-12 tr|Q5ZMF8|Q5ZMF8_CHICK Putative uncharacterized protein OS=Gallu... 75 2e-12 tr|Q8IWQ2|Q8IWQ2_HUMAN TGS1 OS=Homo sapiens PE=2 SV=1 75 2e-12 tr|Q8IWQ1|Q8IWQ1_HUMAN TGS2 OS=Homo sapiens PE=2 SV=1 75 2e-12 tr|Q6P142|Q6P142_HUMAN LIN9 protein (Fragment) OS=Homo sapiens G... 75 2e-12 tr|B1B046|B1B046_HUMAN Lin-9 homolog (C. elegans) OS=Homo sapien... 75 2e-12 tr|B1ANK3|B1ANK3_HUMAN Lin-9 homolog (C. elegans) OS=Homo sapien... 75 2e-12 tr|Q08BJ0|Q08BJ0_DANRE Lin9 protein OS=Danio rerio GN=lin9 PE=2 ... 73 1e-11
>tr|A9RVZ7|A9RVZ7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161252 PE=4 SV=1 Length = 1323
Score = 161 bits (407), Expect = 3e-38 Identities = 76/99 (76%), Positives = 81/99 (81%) Frame = -3
Query: 320 CSHAVVAEEKYSNKVRLTHCLSSEKVRRWCIYEWFYSAIDLPWFARNEFVEYLNHAGLGH 141 C H S K ++ HCL KVRRWC+ EWFYSAIDLPWFARNEFVEYLNHAGLGH Sbjct: 678 CPHTTPELGTDSAKAKIIHCLCP-KVRRWCMCEWFYSAIDLPWFARNEFVEYLNHAGLGH 736
Query: 140 VPRLTRAEWGVIRGSLGKPRRLSKRFLQEERDKLEAYRD 24 VPRLTR EWGVIRGSLGKPRRLSKRFLQEER+KLE YR+ Sbjct: 737 VPRLTRVEWGVIRGSLGKPRRLSKRFLQEEREKLETYRE 775
>tr|Q6AUE7|Q6AUE7_ORYSJ Expressed protein OS=Oryza sativa subsp. japonica GN=OSJNBb0029I19.5 PE=4 SV=1 Length = 1251
Score = 146 bits (368), Expect = 8e-34 Identities = 65/86 (75%), Positives = 73/86 (84%) Frame = -3
Query: 281 KVRLTHCLSSEKVRRWCIYEWFYSAIDLPWFARNEFVEYLNHAGLGHVPRLTRAEWGVIR 102 K L+HCLSS +RRWC +EWFYSAID PWF ++EFVEYLNH LGHVPRLTR EWGVIR Sbjct: 690 KDSLSHCLSSRLLRRWCTFEWFYSAIDFPWFEKSEFVEYLNHVKLGHVPRLTRVEWGVIR 749
Query: 101 GSLGKPRRLSKRFLQEERDKLEAYRD 24 SLGKPRRLSK+FLQEER+KL YR+ Sbjct: 750 SSLGKPRRLSKQFLQEEREKLAQYRE 775
>tr|Q10G93|Q10G93_ORYSJ DIRP family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g43800 PE=4 SV=1 Length = 1255
Score = 146 bits (368), Expect = 8e-34 Identities = 65/86 (75%), Positives = 73/86 (84%) Frame = -3
Query: 281 KVRLTHCLSSEKVRRWCIYEWFYSAIDLPWFARNEFVEYLNHAGLGHVPRLTRAEWGVIR 102 K L+HCLSS +RRWC +EWFYSAID PWF ++EFVEYLNH LGHVPRLTR EWGVIR Sbjct: 694 KDSLSHCLSSRLLRRWCTFEWFYSAIDFPWFEKSEFVEYLNHVKLGHVPRLTRVEWGVIR 753
Query: 101 GSLGKPRRLSKRFLQEERDKLEAYRD 24 SLGKPRRLSK+FLQEER+KL YR+ Sbjct: 754 SSLGKPRRLSKQFLQEEREKLAQYRE 779
>tr|Q10G92|Q10G92_ORYSJ DIRP family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g43800 PE=4 SV=1 Length = 1246
Score = 146 bits (368), Expect = 8e-34 Identities = 65/86 (75%), Positives = 73/86 (84%) Frame = -3
Query: 281 KVRLTHCLSSEKVRRWCIYEWFYSAIDLPWFARNEFVEYLNHAGLGHVPRLTRAEWGVIR 102 K L+HCLSS +RRWC +EWFYSAID PWF ++EFVEYLNH LGHVPRLTR EWGVIR Sbjct: 694 KDSLSHCLSSRLLRRWCTFEWFYSAIDFPWFEKSEFVEYLNHVKLGHVPRLTRVEWGVIR 753
Query: 101 GSLGKPRRLSKRFLQEERDKLEAYRD 24 SLGKPRRLSK+FLQEER+KL YR+ Sbjct: 754 SSLGKPRRLSKQFLQEEREKLAQYRE 779
>tr|Q0DQ40|Q0DQ40_ORYSJ Os03g0639200 protein OS=Oryza sativa subsp. japonica GN=Os03g0639200 PE=4 SV=1 Length = 1272
Score = 146 bits (368), Expect = 8e-34 Identities = 65/86 (75%), Positives = 73/86 (84%) Frame = -3
Query: 281 KVRLTHCLSSEKVRRWCIYEWFYSAIDLPWFARNEFVEYLNHAGLGHVPRLTRAEWGVIR 102 K L+HCLSS +RRWC +EWFYSAID PWF ++EFVEYLNH LGHVPRLTR EWGVIR Sbjct: 699 KDSLSHCLSSRLLRRWCTFEWFYSAIDFPWFEKSEFVEYLNHVKLGHVPRLTRVEWGVIR 758
Query: 101 GSLGKPRRLSKRFLQEERDKLEAYRD 24 SLGKPRRLSK+FLQEER+KL YR+ Sbjct: 759 SSLGKPRRLSKQFLQEEREKLAQYRE 784
>tr|B8AN37|B8AN37_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_12754 PE=4 SV=1 Length = 979
Score = 146 bits (368), Expect = 8e-34 Identities = 65/86 (75%), Positives = 73/86 (84%) Frame = -3
Query: 281 KVRLTHCLSSEKVRRWCIYEWFYSAIDLPWFARNEFVEYLNHAGLGHVPRLTRAEWGVIR 102 K L+HCLSS +RRWC +EWFYSAID PWF ++EFVEYLNH LGHVPRLTR EWGVIR Sbjct: 676 KDSLSHCLSSRLLRRWCTFEWFYSAIDFPWFEKSEFVEYLNHVKLGHVPRLTRVEWGVIR 735
Query: 101 GSLGKPRRLSKRFLQEERDKLEAYRD 24 SLGKPRRLSK+FLQEER+KL YR+ Sbjct: 736 SSLGKPRRLSKQFLQEEREKLAQYRE 761
>tr|Q9LIF3|Q9LIF3_ARATH Genomic DNA, chromosome 3, P1 clone:MHC9 OS=Arabidopsis thaliana PE=4 SV=1 Length = 1128
Score = 145 bits (365), Expect = 2e-33 Identities = 62/84 (73%), Positives = 73/84 (86%) Frame = -3
Query: 275 RLTHCLSSEKVRRWCIYEWFYSAIDLPWFARNEFVEYLNHAGLGHVPRLTRAEWGVIRGS 96 + +HC+SS + RRWCI+EWFYSAID PWFAR EFVEYL+H GLGHVPRLTR EWGVIR S Sbjct: 585 KFSHCISSFRARRWCIFEWFYSAIDYPWFARQEFVEYLDHVGLGHVPRLTRVEWGVIRSS 644
Query: 95 LGKPRRLSKRFLQEERDKLEAYRD 24 LGKPRR S++FL+EE++KL YRD Sbjct: 645 LGKPRRFSEQFLKEEKEKLYLYRD 668
>tr|Q6A332|Q6A332_ARATH Always early protein 3 OS=Arabidopsis thaliana GN=Ataly3 PE=2 SV=1 Length = 1132
Score = 145 bits (365), Expect = 2e-33 Identities = 62/84 (73%), Positives = 73/84 (86%) Frame = -3
Query: 275 RLTHCLSSEKVRRWCIYEWFYSAIDLPWFARNEFVEYLNHAGLGHVPRLTRAEWGVIRGS 96 + +HC+SS + RRWCI+EWFYSAID PWFAR EFVEYL+H GLGHVPRLTR EWGVIR S Sbjct: 589 KFSHCISSFRARRWCIFEWFYSAIDYPWFARQEFVEYLDHVGLGHVPRLTRVEWGVIRSS 648
Query: 95 LGKPRRLSKRFLQEERDKLEAYRD 24 LGKPRR S++FL+EE++KL YRD Sbjct: 649 LGKPRRFSEQFLKEEKEKLYLYRD 672
>tr|Q0WLW8|Q0WLW8_ARATH Putative uncharacterized protein At3g21430 (Fragment) OS=Arabidopsis thaliana GN=At3g21430 PE=2 SV=1 Length = 569
Score = 145 bits (365), Expect = 2e-33 Identities = 62/84 (73%), Positives = 73/84 (86%) Frame = -3
Query: 275 RLTHCLSSEKVRRWCIYEWFYSAIDLPWFARNEFVEYLNHAGLGHVPRLTRAEWGVIRGS 96 + +HC+SS + RRWCI+EWFYSAID PWFAR EFVEYL+H GLGHVPRLTR EWGVIR S Sbjct: 26 KFSHCISSFRARRWCIFEWFYSAIDYPWFARQEFVEYLDHVGLGHVPRLTRVEWGVIRSS 85
Query: 95 LGKPRRLSKRFLQEERDKLEAYRD 24 LGKPRR S++FL+EE++KL YRD Sbjct: 86 LGKPRRFSEQFLKEEKEKLYLYRD 109
>tr|A7NW60|A7NW60_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019794001 PE=4 SV=1 Length = 935
Score = 143 bits (361), Expect = 5e-33 Identities = 62/86 (72%), Positives = 74/86 (86%) Frame = -3
Query: 281 KVRLTHCLSSEKVRRWCIYEWFYSAIDLPWFARNEFVEYLNHAGLGHVPRLTRAEWGVIR 102 K +L++CLS +VRRWC +EWFYSAID PWFA+ EFVEYL+H GLGHVPRLTR EWGVIR Sbjct: 567 KEKLSNCLSCYRVRRWCAFEWFYSAIDYPWFAKKEFVEYLDHVGLGHVPRLTRVEWGVIR 626
Query: 101 GSLGKPRRLSKRFLQEERDKLEAYRD 24 SLGKPRR S++FL+EE++KL YRD Sbjct: 627 SSLGKPRRFSEQFLKEEKEKLNQYRD 652
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