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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912557
Clone id YMU001_000020_C09
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGCTCATTATAGCGGCTAAATGTCGCACCAGCTTCAACAGAATATTACAATTTGTAAGTG
ATAAGACTTTTCTCGAAGATGGTGGTTTGTTGGCAAGTGTGTGATAATTTAGTAAAAACT
TTGTTGCGATTAACAGATTTTAATATGACTTGGGCAGGAGAGGTAGATGACCTCGCATTC
TCTTTAATAAGTGCTTACTGACTCATTGCAATTGCAGGTTGCTGAAACAAATACAGCTGT
AGATGCTTTGTCAAAAGCACTTCATGTATTTACGGCTGCTGAATCTGCATCAACATGTAC
AGAAGAGGGCATGGCTGCTTTGAAAAACGTTTTGGATTTTAGCTTTCATGATGTGGATAG
TTTTGTTCGGCTTGTGCGAATAGCTTTGGAGGCAATGGGGCTTTAAACATCAGCTCATTA
GTGGTTGTGCATACAAATTTGTCAAAGAGGTTATGTGTGGGTGTCTTACCCTTGGCCATC
AACCTGTGTGGTTGGCACATGCTGTTAGAGA
■■Homology search results ■■ -
sp_hit_id P70325
Definition sp|P70325|TBX4_MOUSE T-box transcription factor TBX4 OS=Mus musculus
Align length 50
Score (bit) 30.8
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912557|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_C09.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P70325|TBX4_MOUSE T-box transcription factor TBX4 OS=Mus musc...    31   3.8  
sp|P57082|TBX4_HUMAN T-box transcription factor TBX4 OS=Homo sap...    31   3.8  
sp|Q861Q9|TBX4_CANFA T-box transcription factor TBX4 OS=Canis fa...    31   3.8  
sp|Q2LE08|FXP1B_DANRE Forkhead box protein P1-B OS=Danio rerio G...    31   3.9  
sp|Q9IAK8|TBX5_DANRE T-box transcription factor TBX5 OS=Danio re...    30   5.0  
sp|Q31CL5|NRDR_PROM9 Transcriptional repressor nrdR OS=Prochloro...    30   6.6  
sp|Q3SA47|TBX5_XENTR T-box transcription factor TBX5 OS=Xenopus ...    30   8.5  
sp|Q9W7C2|TBX5_XENLA T-box transcription factor TBX5 OS=Xenopus ...    30   8.5  
sp|Q5I2P1|TBX5_RAT T-box transcription factor TBX5 OS=Rattus nor...    30   8.5  
sp|P70326|TBX5_MOUSE T-box transcription factor TBX5 OS=Mus musc...    30   8.5  
sp|Q99593|TBX5_HUMAN T-box transcription factor TBX5 OS=Homo sap...    30   8.5  
sp|Q9PWE8|TBX5_CHICK T-box transcription factor TBX5 OS=Gallus g...    30   8.5  

>sp|P70325|TBX4_MOUSE T-box transcription factor TBX4 OS=Mus
           musculus GN=Tbx4 PE=2 SV=2
          Length = 552

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 445 LTNLYAQPLMS*CLKPHCLQSYSHKPNKTIHIMKAKIQNVFQSSHALFCT 296
           LTN +  P        H + +  HK    +HI+KA   N F S +  FCT
Sbjct: 178 LTNNHLDPF------GHIILNSMHKYQPRLHIVKADENNAFGSKNTAFCT 221


>sp|P57082|TBX4_HUMAN T-box transcription factor TBX4 OS=Homo
           sapiens GN=TBX4 PE=1 SV=2
          Length = 545

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 445 LTNLYAQPLMS*CLKPHCLQSYSHKPNKTIHIMKAKIQNVFQSSHALFCT 296
           LTN +  P        H + +  HK    +HI+KA   N F S +  FCT
Sbjct: 173 LTNNHLDPF------GHIILNSMHKYQPRLHIVKADENNAFGSKNTAFCT 216


>sp|Q861Q9|TBX4_CANFA T-box transcription factor TBX4 OS=Canis
           familiaris GN=TBX4 PE=2 SV=1
          Length = 554

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 445 LTNLYAQPLMS*CLKPHCLQSYSHKPNKTIHIMKAKIQNVFQSSHALFCT 296
           LTN +  P        H + +  HK    +HI+KA   N F S +  FCT
Sbjct: 180 LTNNHLDPF------GHIILNSMHKYQPRLHIVKADENNAFGSKNTAFCT 223


>sp|Q2LE08|FXP1B_DANRE Forkhead box protein P1-B OS=Danio rerio
           GN=foxp1b PE=2 SV=1
          Length = 659

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
 Frame = -3

Query: 386 KLFAQAEQNYPHHES*NPKRFSKQPC-----------PLLYMLMQIQQP*IHEVLLTKHL 240
           ++  Q +Q    H+S  PK   KQP            P +    Q+QQ   H+VL  + L
Sbjct: 59  QILLQQQQQSSVHKS--PKNNDKQPATQVPVSVAMMTPQVITPQQMQQILQHQVLSPQQL 116

Query: 239 QLYLFQQPAIAMSQ 198
           QL L QQ A+ + Q
Sbjct: 117 QLLLQQQQALMLQQ 130


>sp|Q9IAK8|TBX5_DANRE T-box transcription factor TBX5 OS=Danio rerio
           GN=tbx5 PE=2 SV=1
          Length = 492

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 445 LTNLYAQPLMS*CLKPHCLQSYSHKPNKTIHIMKAKIQNVFQSSHALFCT 296
           LTN +  P        H + +  HK    IHI+KA   N F S +  FCT
Sbjct: 159 LTNNHLDPF------GHIILNSMHKYQPRIHIVKADENNGFGSKNTAFCT 202


>sp|Q31CL5|NRDR_PROM9 Transcriptional repressor nrdR
           OS=Prochlorococcus marinus (strain MIT 9312) GN=nrdR
           PE=3 SV=1
          Length = 159

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -3

Query: 173 RSSTSPAQVILKSVN-----RNKVFTKLSHTCQQTTIFEKSLITY 54
           R  T P  VI K  N     + K+FT +S  C++TT   +++I +
Sbjct: 43  RVETMPVSVIKKDGNSELFDKQKLFTGISRACEKTTFTSEAIINF 87


>sp|Q3SA47|TBX5_XENTR T-box transcription factor TBX5 OS=Xenopus
           tropicalis GN=tbx5 PE=2 SV=1
          Length = 519

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 445 LTNLYAQPLMS*CLKPHCLQSYSHKPNKTIHIMKAKIQNVFQSSHALFCT 296
           LTN +  P        H + +  HK    +HI+KA   N F S +  FCT
Sbjct: 160 LTNNHLDPF------GHIILNSMHKYQPRLHIVKADENNGFGSKNTAFCT 203


>sp|Q9W7C2|TBX5_XENLA T-box transcription factor TBX5 OS=Xenopus
           laevis GN=tbx5 PE=2 SV=1
          Length = 519

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 445 LTNLYAQPLMS*CLKPHCLQSYSHKPNKTIHIMKAKIQNVFQSSHALFCT 296
           LTN +  P        H + +  HK    +HI+KA   N F S +  FCT
Sbjct: 160 LTNNHLDPF------GHIILNSMHKYQPRLHIVKADENNGFGSKNTAFCT 203


>sp|Q5I2P1|TBX5_RAT T-box transcription factor TBX5 OS=Rattus
           norvegicus GN=Tbx5 PE=2 SV=1
          Length = 517

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 445 LTNLYAQPLMS*CLKPHCLQSYSHKPNKTIHIMKAKIQNVFQSSHALFCT 296
           LTN +  P        H + +  HK    +HI+KA   N F S +  FCT
Sbjct: 160 LTNNHLDPF------GHIILNSMHKYQPRLHIVKADENNGFGSKNTAFCT 203


>sp|P70326|TBX5_MOUSE T-box transcription factor TBX5 OS=Mus
           musculus GN=Tbx5 PE=1 SV=2
          Length = 518

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 445 LTNLYAQPLMS*CLKPHCLQSYSHKPNKTIHIMKAKIQNVFQSSHALFCT 296
           LTN +  P        H + +  HK    +HI+KA   N F S +  FCT
Sbjct: 160 LTNNHLDPF------GHIILNSMHKYQPRLHIVKADENNGFGSKNTAFCT 203
tr_hit_id A7PS72
Definition tr|A7PS72|A7PS72_VITVI Chromosome chr14 scaffold_27, whole genome shotgun sequence OS=Vitis vinifera
Align length 56
Score (bit) 56.2
E-value 9.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912557|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_C09.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PS72|A7PS72_VITVI Chromosome chr14 scaffold_27, whole genom...    56   9e-07
tr|A7PTW9|A7PTW9_VITVI Chromosome chr7 scaffold_31, whole genome...    50   6e-05
tr|A5BJN7|A5BJN7_VITVI Putative uncharacterized protein OS=Vitis...    50   6e-05
tr|Q8GY51|Q8GY51_ARATH Putative uncharacterized protein At4g1573...    46   0.001
tr|O23424|O23424_ARATH Putative uncharacterized protein dl3905c ...    46   0.001
tr|A7NW54|A7NW54_VITVI Chromosome chr5 scaffold_2, whole genome ...    45   0.002
tr|A5ALQ1|A5ALQ1_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|B8B5T9|B8B5T9_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.013
tr|A3BN93|A3BN93_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.013
tr|Q10LI9|Q10LI9_ORYSJ Os03g0347300 protein OS=Oryza sativa subs...    41   0.030
tr|B8APF4|B8APF4_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.030
tr|A3AHV9|A3AHV9_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.030
tr|Q9LZH6|Q9LZH6_ARATH Putative uncharacterized protein F26K9_33...    38   0.33 
tr|Q9SRZ1|Q9SRZ1_ARATH F22D16.1 protein OS=Arabidopsis thaliana ...    37   0.43 
tr|Q8W3N8|Q8W3N8_ORYSJ 26S proteasome regulatory particle triple...    37   0.56 
tr|Q69Q32|Q69Q32_ORYSJ Os06g0607800 protein OS=Oryza sativa subs...    37   0.56 
tr|B8B4N6|B8B4N6_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.56 
tr|B7FFY0|B7FFY0_MEDTR Putative uncharacterized protein OS=Medic...    37   0.56 
tr|B4FY92|B4FY92_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.56 
tr|A9PEV6|A9PEV6_POPTR Putative uncharacterized protein OS=Popul...    37   0.56 
tr|A7P8W2|A7P8W2_VITVI Chromosome chr3 scaffold_8, whole genome ...    37   0.56 
tr|A5AEB9|A5AEB9_VITVI Putative uncharacterized protein (Chromos...    37   0.56 
tr|Q9FXT8|Q9FXT8_ORYSJ Os02g0199900 protein OS=Oryza sativa subs...    37   0.74 
tr|B8ADT3|B8ADT3_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.74 
tr|B4FTV9|B4FTV9_MAIZE 26S protease regulatory subunit S10B OS=Z...    37   0.74 
tr|Q0DIQ5|Q0DIQ5_ORYSJ Os05g0371100 protein OS=Oryza sativa subs...    36   0.96 
tr|Q60EW4|Q60EW4_ORYSJ Putative uncharacterized protein OJ1118_F...    36   1.3  
tr|B8AXG0|B8AXG0_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.3  
tr|A9PB39|A9PB39_POPTR Putative uncharacterized protein OS=Popul...    36   1.3  
tr|A9NWQ8|A9NWQ8_PICSI Putative uncharacterized protein OS=Picea...    36   1.3  

>tr|A7PS72|A7PS72_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022791001
           PE=4 SV=1
          Length = 818

 Score = 56.2 bits (134), Expect = 9e-07
 Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
 Frame = +2

Query: 236 AVDALSKALHVFTAAES--ASTCTEEGMAALKNVLDFSFHDVDSFVRLVRIALEAM 397
           A++A  K+ + F AA    A    EEG++++K VLDFSFHDVD F+RLVR+A+EA+
Sbjct: 761 AMEASWKSQNAFAAANVVLAEAGNEEGISSVKRVLDFSFHDVDGFLRLVRLAMEAL 816


>tr|A7PTW9|A7PTW9_VITVI Chromosome chr7 scaffold_31, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00023564001
            PE=4 SV=1
          Length = 1423

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 24/60 (40%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
 Frame = +2

Query: 224  ETNTAVDALSKALHVFTAAES--ASTCTEEGMAALKNVLDFSFHDVDSFVRLVRIALEAM 397
            + N+A++A  K+   F AA +    T  +EG++++K  LD++FHDV+  +RLVR+A+EA+
Sbjct: 1362 DVNSAMEASRKSRLAFAAANANLEETQHKEGISSIKQALDYNFHDVEGLLRLVRLAMEAI 1421


>tr|A5BJN7|A5BJN7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_006858 PE=4 SV=1
          Length = 1671

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 24/60 (40%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
 Frame = +2

Query: 224  ETNTAVDALSKALHVFTAAES--ASTCTEEGMAALKNVLDFSFHDVDSFVRLVRIALEAM 397
            + N+A++A  K+   F AA +    T  +EG++++K  LD++FHDV+  +RLVR+A+EA+
Sbjct: 1610 DVNSAMEASRKSRLAFAAANANLEETQHKEGISSIKQALDYNFHDVEGLLRLVRLAMEAI 1669


>tr|Q8GY51|Q8GY51_ARATH Putative uncharacterized protein
            At4g15730/dl3905c (At4g15730) OS=Arabidopsis thaliana
            GN=At4g15730/dl3905c PE=2 SV=1
          Length = 1059

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 20/58 (34%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
 Frame = +2

Query: 230  NTAVDALSKALHVFTAAESASTCTEEG--MAALKNVLDFSFHDVDSFVRLVRIALEAM 397
            N A++A +K+ + F A    S   + G  ++A+K V+DFSFHDV++ ++++ +A++A+
Sbjct: 992  NLAMEASAKSQNAFKAVTDTSEERKHGDCISAIKKVVDFSFHDVEALIKMIEVAMDAL 1049


>tr|O23424|O23424_ARATH Putative uncharacterized protein dl3905c
            (Putative uncharacterized protein AT4g15730)
            OS=Arabidopsis thaliana GN=dl3905c PE=4 SV=1
          Length = 1052

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 20/58 (34%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
 Frame = +2

Query: 230  NTAVDALSKALHVFTAAESASTCTEEG--MAALKNVLDFSFHDVDSFVRLVRIALEAM 397
            N A++A +K+ + F A    S   + G  ++A+K V+DFSFHDV++ ++++ +A++A+
Sbjct: 985  NLAMEASAKSQNAFKAVTDTSEERKHGDCISAIKKVVDFSFHDVEALIKMIEVAMDAL 1042


>tr|A7NW54|A7NW54_VITVI Chromosome chr5 scaffold_2, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00019788001
            PE=4 SV=1
          Length = 1279

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +2

Query: 224  ETNTAVDALSKALHVFTAAESA--STCTEEGMAALKNVLDFSFHDVDSFVRLVRIALEAM 397
            + N A++A  K+   F AA          EG+ +++ V+DFSF DV+  +RLVR+A EA+
Sbjct: 1219 DVNFAIEASRKSQKAFVAANLLLEEAQNREGITSVRRVIDFSFQDVEGLIRLVRLAQEAI 1278


>tr|A5ALQ1|A5ALQ1_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_015865 PE=4 SV=1
          Length = 1619

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +2

Query: 224  ETNTAVDALSKALHVFTAAESA--STCTEEGMAALKNVLDFSFHDVDSFVRLVRIALEAM 397
            + N A++A  K+   F AA          EG+ +++ V+DFSF DV+  +RLVR+A EA+
Sbjct: 1559 DVNFAIEASRKSQKAFVAANLLLEEAQNREGITSVRRVIDFSFQDVEGLIRLVRLAQEAI 1618


>tr|B8B5T9|B8B5T9_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_27275 PE=4 SV=1
          Length = 1576

 Score = 42.4 bits (98), Expect = 0.013
 Identities = 20/58 (34%), Positives = 36/58 (62%)
 Frame = +2

Query: 224  ETNTAVDALSKALHVFTAAESASTCTEEGMAALKNVLDFSFHDVDSFVRLVRIALEAM 397
            + N A DA  K+     +A S      +G++++K VLDF+F  V+  +RLVR+++E++
Sbjct: 1517 DVNCAFDATRKSQMAIASAASNQENGIDGLSSVKTVLDFNFQSVNDLLRLVRLSMESI 1574


>tr|A3BN93|A3BN93_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_024515 PE=4 SV=1
          Length = 1524

 Score = 42.4 bits (98), Expect = 0.013
 Identities = 20/58 (34%), Positives = 36/58 (62%)
 Frame = +2

Query: 224  ETNTAVDALSKALHVFTAAESASTCTEEGMAALKNVLDFSFHDVDSFVRLVRIALEAM 397
            + N A DA  K+     +A S      +G++++K VLDF+F  V+  +RLVR+++E++
Sbjct: 1465 DVNCAFDATRKSQMAIASAASNQENGIDGLSSVKTVLDFNFQSVNDLLRLVRLSMESI 1522


>tr|Q10LI9|Q10LI9_ORYSJ Os03g0347300 protein OS=Oryza sativa subsp.
            japonica GN=Os03g0347300 PE=4 SV=1
          Length = 902

 Score = 41.2 bits (95), Expect = 0.030
 Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
 Frame = +2

Query: 224  ETNTAVDALSKALHVFTAAESAST---CTEEGMAALKNVLDFSFHDVDSFVRLVRIALE 391
            + N A DA  K+     +A S+       ++G+A+++ VLDF+F++V+  +RLVR+++E
Sbjct: 840  DVNCAFDATRKSQVAIASAASSQERGKTVDDGLASVRTVLDFNFNNVNELLRLVRLSME 898