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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912561
Clone id YMU001_000020_D02
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGGATAAAGGCAAGTAGGTAGGGAAATAAAAAATTGATAAGAAGGAGGATTCCAATGCA
ACATGTAAAAATATATCTTTCCACAGCCCCTGTTGTAGCTACAATATGGTTTGGCTTACT
GGCTGGTTTATTAATAGAAATAAATCGATTCTTTCCGGATGCTGTATTATTTCCATTTCC
CTAACTTATTGTTATTAACTAAACCAAAGGAGCCGTGTAGGAACCATACGAAGTGAGAAC
TCTATGGTTCGTCATACACGTAATAATGACTCAATTTAGTGATGGGAGTGTTTAATCTAT
TTACTTCATAGGTCGAAACTTCGTAAGTAGTTCGTCTCTATTGCTATGGATCTACATGCG
ACCCTCACCCCCTCTTTTTGGGGAAACTAATTAAATTAGAGTACATCTGATTCCATGGCC
AATACTAAAGATGCAAGGGTAACTATTGCTTTGGAATGTACAAGTTGTATTCAGAGAAAA
ACCAGTGGAAAATCCGCGGGTCTTTGCCGATACACTACACGTAAAAATCGTCGTAACACA
CCCGCTCGGCTGGAGT
■■Homology search results ■■ -
sp_hit_id Q85FK1
Definition sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic OS=Adiantum capillus-veneris
Align length 47
Score (bit) 98.2
E-value 2.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912561|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_D02.
         (556 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic OS...    98   2e-20
sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS...    88   3e-17
sp|A2T353|PSAJ_ANGEV Photosystem I reaction center subunit IX OS...    75   2e-13
sp|P12191|PSAJ_MARPO Photosystem I reaction center subunit IX OS...    73   1e-12
sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX OS...    72   1e-12
sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX OS...    72   1e-12
sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX OS...    72   2e-12
sp|A6H5K2|PSAJ_CYCTA Photosystem I reaction center subunit IX OS...    72   2e-12
sp|Q32RT6|PSAJ_STAPU Photosystem I reaction center subunit IX OS...    71   3e-12
sp|Q5SD35|PSAJ_HUPLU Photosystem I reaction center subunit IX OS...    71   3e-12
sp|B2Y1X9|PSAJ_WELMI Photosystem I reaction center subunit IX OS...    71   4e-12
sp|Q32RH5|PSAJ_ZYGCR Photosystem I reaction center subunit IX OS...    70   5e-12
sp|Q2PMR4|PSAJ_SOYBN Photosystem I reaction center subunit IX OS...    70   5e-12
sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX OS...    70   5e-12
sp|A4GGC6|PSAJ_PHAVU Photosystem I reaction center subunit IX OS...    70   5e-12
sp|A9L9B6|PSAJ_LEMMI Photosystem I reaction center subunit IX OS...    70   5e-12
sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX OS...    70   9e-12
sp|Q7YJV6|PSAJ_CALFG Photosystem I reaction center subunit IX OS...    69   1e-11
sp|Q09G26|PSAJ_PLAOC Photosystem I reaction center subunit IX OS...    69   2e-11
sp|Q3BAM0|PSAJ_PHAAO Photosystem I reaction center subunit IX OS...    69   2e-11
sp|Q06FK6|PSAJ_PELHO Photosystem I reaction center subunit IX OS...    69   2e-11
sp|A6MMM7|PSAJ_DIOEL Photosystem I reaction center subunit IX OS...    69   2e-11
sp|A4GYT1|PSAJ_POPTR Photosystem I reaction center subunit IX OS...    69   2e-11
sp|Q14FD7|PSAJ_POPAL Photosystem I reaction center subunit IX OS...    69   2e-11
sp|Q09WZ7|PSAJ_MORIN Photosystem I reaction center subunit IX OS...    69   2e-11
sp|B1NWH0|PSAJ_MANES Photosystem I reaction center subunit IX OS...    69   2e-11
sp|B2XWM5|PSAJ_FAGEA Photosystem I reaction center subunit IX OS...    69   2e-11
sp|Q2QD69|PSAJ_CUCSA Photosystem I reaction center subunit IX OS...    69   2e-11
sp|Q70XY6|PSAJ_AMBTC Photosystem I reaction center subunit IX OS...    69   2e-11
sp|Q0ZJ00|PSAJ_VITVI Photosystem I reaction center subunit IX OS...    68   3e-11

>sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic
           OS=Adiantum capillus-veneris GN=rpl33 PE=2 SV=2
          Length = 66

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 47/47 (100%), Positives = 47/47 (100%)
 Frame = +1

Query: 415 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLE 555
           MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLE
Sbjct: 1   MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLE 47


>sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX
           OS=Adiantum capillus-veneris GN=psaJ PE=2 SV=2
          Length = 42

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 41/42 (97%), Positives = 42/42 (100%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPFP 181
           MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDA+LFPFP
Sbjct: 1   MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALLFPFP 42


>sp|A2T353|PSAJ_ANGEV Photosystem I reaction center subunit IX
           OS=Angiopteris evecta GN=psaJ PE=3 SV=1
          Length = 44

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 34/41 (82%), Positives = 38/41 (92%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           MQ VK YLSTAPV+AT+WFG LAGLLIEINRFFPDA++FPF
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFPDALIFPF 41


>sp|P12191|PSAJ_MARPO Photosystem I reaction center subunit IX
           OS=Marchantia polymorpha GN=psaJ PE=3 SV=1
          Length = 42

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 33/41 (80%), Positives = 37/41 (90%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           MQ VK YLSTAPV+AT+WFG LAGLLIEINRFFPDA++ PF
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFPDALVLPF 41


>sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX
           OS=Chara vulgaris GN=psaJ PE=3 SV=1
          Length = 41

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 32/41 (78%), Positives = 38/41 (92%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           MQ VK YLSTAPV+AT+WFGLLAG+LIEINRFFPDA++ P+
Sbjct: 1   MQDVKTYLSTAPVLATLWFGLLAGILIEINRFFPDALVLPY 41


>sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX
           OS=Chaetosphaeridium globosum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 32/41 (78%), Positives = 37/41 (90%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           MQ+ K YLSTAPV+ATIWFG LAGLLIEINRFFPDA++ P+
Sbjct: 1   MQYFKTYLSTAPVIATIWFGFLAGLLIEINRFFPDALVLPY 41


>sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX
           OS=Gnetum parvifolium GN=psaJ PE=3 SV=1
          Length = 43

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 33/41 (80%), Positives = 36/41 (87%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           MQ +K YLSTAPV+AT WFGLLAGLLIEINRFFPDA+ F F
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINRFFPDALTFSF 41


>sp|A6H5K2|PSAJ_CYCTA Photosystem I reaction center subunit IX
           OS=Cycas taitungensis GN=psaJ PE=3 SV=1
          Length = 44

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 32/41 (78%), Positives = 37/41 (90%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           M+ +K YLSTAPV+AT+WFG LAGLLIEINRFFPDA+ FPF
Sbjct: 1   MRDIKTYLSTAPVLATLWFGSLAGLLIEINRFFPDALTFPF 41


>sp|Q32RT6|PSAJ_STAPU Photosystem I reaction center subunit IX
           OS=Staurastrum punctulatum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 32/41 (78%), Positives = 37/41 (90%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           MQ VK YLSTAPV+A IWFG+LAGLLIEINRFFPDA++ P+
Sbjct: 1   MQDVKTYLSTAPVLAAIWFGILAGLLIEINRFFPDALVLPY 41


>sp|Q5SD35|PSAJ_HUPLU Photosystem I reaction center subunit IX
           OS=Huperzia lucidula GN=psaJ PE=3 SV=1
          Length = 42

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 32/40 (80%), Positives = 37/40 (92%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFP 175
           MQ V+ YLSTAPV+AT+WFG LAGLLIEINRFFPDA++FP
Sbjct: 1   MQDVETYLSTAPVLATLWFGFLAGLLIEINRFFPDALVFP 40
tr_hit_id B7ZIH4
Definition tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra equisetina
Align length 41
Score (bit) 71.6
E-value 3.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912561|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_D02.
         (556 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra equis...    72   3e-11
tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum parvif...    72   3e-11
tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cy...    72   3e-11
tr|B7ZI29|B7ZI29_WELMI Photosystem I subunit IX OS=Welwitschia m...    71   4e-11
tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia lepid...    71   4e-11
tr|B6RRE9|B6RRE9_9CARY PSI reaction centre subunit IX OS=Heliosp...    69   1e-10
tr|Q4FFL5|Q4FFL5_9ASPA Photosystem I subunit IX (Fragment) OS=Yu...    69   2e-10
tr|B7T458|B7T458_9ROSI Photosystem I subunit IX OS=Pelargonium c...    69   2e-10
tr|B7T3J5|B7T3J5_9ROSI Photosystem I subunit IX OS=Geranium palm...    69   2e-10
tr|B7T3C4|B7T3C4_9ROSI Photosystem I subunit IX OS=Geranium macr...    69   2e-10
tr|B7T354|B7T354_9ROSI Photosystem I subunit IX OS=Geranium caro...    69   2e-10
tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment) OS=Gi...    69   2e-10
tr|Q06R45|Q06R45_9LAMI PSI reaction center subunit IX OS=Forsyth...    68   3e-10
tr|Q06R19|Q06R19_9LAMI PSI reaction center subunit IX OS=Jasminu...    68   3e-10
tr|Q06QZ2|Q06QZ2_9LAMI PSI reaction center subunit IX OS=Jasminu...    68   3e-10
tr|B7T2Y3|B7T2Y3_EROTE Photosystem I subunit IX OS=Erodium texan...    68   3e-10
tr|B7T2R2|B7T2R2_9ROSI Photosystem I subunit IX OS=Erodium chrys...    68   3e-10
tr|B2D073|B2D073_OLEEU Photosystem II protein J OS=Olea europaea...    68   3e-10
tr|B0LP54|B0LP54_9CARY PSI reaction centre subunit IX OS=Silene ...    68   3e-10
tr|B0LP33|B0LP33_9CARY PSI reaction centre subunit IX OS=Silene ...    68   3e-10
tr|A7NVL0|A7NVL0_VITVI PSI reaction centre subunit IX OS=Vitis v...    68   3e-10
tr|B0LP12|B0LP12_9CARY PSI reaction centre subunit IX OS=Silene ...    68   4e-10
tr|B0LNZ4|B0LNZ4_9CARY PSI reaction centre subunit IX OS=Silene ...    68   4e-10
tr|B0LNX0|B0LNX0_9CARY PSI reaction centre subunit IX OS=Silene ...    68   4e-10
tr|B0LNU9|B0LNU9_9CARY PSI reaction centre subunit IX OS=Silene ...    68   4e-10
tr|B0LNS9|B0LNS9_9CARY PSI reaction centre subunit IX OS=Silene ...    68   4e-10
tr|B0LNQ7|B0LNQ7_SILLA PSI reaction centre subunit IX OS=Silene ...    68   4e-10
tr|B0LNP3|B0LNP3_SILCO PSI reaction centre subunit IX OS=Silene ...    68   4e-10
tr|B0LNJ2|B0LNJ2_9CARY PSI reaction centre subunit IX OS=Silene ...    68   4e-10
tr|B0LNI1|B0LNI1_9CARY PSI reaction centre subunit IX OS=Silene ...    68   4e-10

>tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra
           equisetina GN=psaJ PE=4 SV=1
          Length = 43

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 32/41 (78%), Positives = 37/41 (90%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           MQ++K YLSTAPV+AT+WFG LAG LIEINRFFPDA+ FPF
Sbjct: 1   MQYIKKYLSTAPVLATLWFGSLAGFLIEINRFFPDALSFPF 41


>tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum
           parvifolium GN=psaJ PE=4 SV=1
          Length = 43

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 33/41 (80%), Positives = 36/41 (87%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           MQ +K YLSTAPV+AT WFGLLAGLLIEINRFFPDA+ F F
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINRFFPDALTFSF 41


>tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cycas
           micronesica GN=psaJ PE=4 SV=1
          Length = 44

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 32/41 (78%), Positives = 37/41 (90%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           M+ +K YLSTAPV+AT+WFG LAGLLIEINRFFPDA+ FPF
Sbjct: 1   MRDIKTYLSTAPVLATLWFGSLAGLLIEINRFFPDALTFPF 41


>tr|B7ZI29|B7ZI29_WELMI Photosystem I subunit IX OS=Welwitschia
           mirabilis GN=psaJ PE=4 SV=1
          Length = 44

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           MQ +K YLSTAPV+AT+WF  LAGLLIEINRFFPDA+ FPF
Sbjct: 1   MQDIKTYLSTAPVLATLWFSSLAGLLIEINRFFPDALTFPF 41


>tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia
           lepidozioides GN=psaJ PE=4 SV=1
          Length = 42

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           MQ VK YLSTAPV+AT+W G LAGLLIEINRFFPDA++ PF
Sbjct: 1   MQDVKTYLSTAPVLATLWLGFLAGLLIEINRFFPDALILPF 41


>tr|B6RRE9|B6RRE9_9CARY PSI reaction centre subunit IX
           OS=Heliosperma alpestre GN=psaJ PE=4 SV=1
          Length = 46

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 30/41 (73%), Positives = 37/41 (90%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           M+++K YLS APV++T+WFG LAGLLIEINRFFPDA+ FPF
Sbjct: 1   MRNIKTYLSVAPVLSTLWFGSLAGLLIEINRFFPDALTFPF 41


>tr|Q4FFL5|Q4FFL5_9ASPA Photosystem I subunit IX (Fragment) OS=Yucca
           schidigera GN=psaJ PE=4 SV=1
          Length = 44

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 31/41 (75%), Positives = 35/41 (85%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           MQ +K YLSTAPV+ T+WFG LAGLLIEINR FPDA+ FPF
Sbjct: 1   MQDIKTYLSTAPVLTTLWFGSLAGLLIEINRLFPDALSFPF 41


>tr|B7T458|B7T458_9ROSI Photosystem I subunit IX OS=Pelargonium
           cotyledonis GN=psaJ PE=4 SV=1
          Length = 44

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 31/41 (75%), Positives = 36/41 (87%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           M+ +K YLS APV++TIWFG LAGLLIEINRFFPDA+ FPF
Sbjct: 1   MRDLKTYLSAAPVLSTIWFGALAGLLIEINRFFPDALTFPF 41


>tr|B7T3J5|B7T3J5_9ROSI Photosystem I subunit IX OS=Geranium
           palmatum GN=psaJ PE=4 SV=1
          Length = 44

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 30/41 (73%), Positives = 36/41 (87%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           M+ +K YLS APV++T+WFG LAGLLIEINRFFPDA+ FPF
Sbjct: 1   MRDLKTYLSAAPVISTLWFGALAGLLIEINRFFPDALTFPF 41


>tr|B7T3C4|B7T3C4_9ROSI Photosystem I subunit IX OS=Geranium
           macrorrhizum GN=psaJ PE=4 SV=1
          Length = 44

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 30/41 (73%), Positives = 36/41 (87%)
 Frame = +2

Query: 56  MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAVLFPF 178
           M+ +K YLS APV++T+WFG LAGLLIEINRFFPDA+ FPF
Sbjct: 1   MRDLKTYLSAAPVISTLWFGALAGLLIEINRFFPDALTFPF 41