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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912569
Clone id YMU001_000020_D11
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGAATCTTCAGAGTCTCCTCCTTTGAACTGCTAGATTGCTTTCTGTGCTTTCTAGACTT
TTTCTTAGAACTACTTTTCTTGTTTTTCTTGCTTTTTCTCCGCTTCTGCTTTTTCTCATC
CTCGTTGGAACTAGAGGACGACGAGCTGTCAGAACTCTCTGAAGACGAAGAAAATTTGGG
TCATCTACGAAATGAACACGCTTCTTGGATCTTCTAGCCCACTCAAAAGTAGATTTCCGG
CCCAAATACATTTCTACTAATTTTCTTTTCTTTCGAGCGTGCTTCATGCTTTTCATCAAC
TGATTTGTCTTCTTTTCAAGAGCTTCATCAAACTCTTTCTATGAGTACAATTTTTGCTTT
CCTGCACTCGGCTTTGATTTTACATCACTACCGACTTGAGAGGAGAATGGACGGCCTCTA
GCCATCTGGAGTGAACCATCAAGTGGGTAATTCTTCAGGTGATTCACATATTTTGAGTAC
TTGGATTACTTGATTAATCTTTTCATGCACATGTCAACCTGCAGTTGATGTTTGTAGAGT
ACCTGCAGGTAATATC
■■Homology search results ■■ -
sp_hit_id Q5EAW9
Definition sp|Q5EAW9|TAF3_XENLA Transcription initiation factor TFIID subunit 3 OS=Xenopus laevis
Align length 116
Score (bit) 35.4
E-value 0.19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912569|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_D11.
         (556 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5EAW9|TAF3_XENLA Transcription initiation factor TFIID subun...    35   0.19 
sp|Q9LVR3|U496G_ARATH UPF0496 protein At5g66670 OS=Arabidopsis t...    32   2.1  
sp|P08799|MYS2_DICDI Myosin-2 heavy chain OS=Dictyostelium disco...    30   6.0  
sp|Q7ZX41|GNL3_XENLA Guanine nucleotide-binding protein-like 3 O...    30   6.0  
sp|Q9QX47|SON_MOUSE SON protein OS=Mus musculus GN=Son PE=1 SV=1       30   7.9  
sp|P18583|SON_HUMAN SON protein OS=Homo sapiens GN=SON PE=1 SV=3       30   7.9  

>sp|Q5EAW9|TAF3_XENLA Transcription initiation factor TFIID subunit
           3 OS=Xenopus laevis GN=taf3 PE=2 SV=1
          Length = 845

 Score = 35.4 bits (80), Expect = 0.19
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
 Frame = -3

Query: 401 SQVGSDVKSKPSAGKQKLYS*KEFDEALEKKTNQLMKSMKHARKKRKLVEMYLGRKSTFE 222
           +++ S  K K + GK+     K+     +KK  +  K  K  + K K  E  +   ST  
Sbjct: 522 NEIDSKSKQKENCGKKDKEKHKD-----KKKDKEKGKKDKDKKGKDKTKEEKMKSPSTPI 576

Query: 221 WARRSKKRVHFVDDPNFLRLQRVLTARRPLVPTRM--RKSRSGEKARKTRKVVLRK 60
                   +  +  PN +RL  +L++  PL+P ++   K +S EK +K  K   +K
Sbjct: 577 MLSSKDIALPMISTPNTVRLPSLLSSMSPLLPEKLFEEKEKSKEKDKKKDKKEKKK 632


>sp|Q9LVR3|U496G_ARATH UPF0496 protein At5g66670 OS=Arabidopsis
           thaliana GN=At5g66670 PE=2 SV=1
          Length = 408

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = -3

Query: 401 SQVGSDVKSKPSAGKQKLYS*KEFDEALEKKTNQLMKSMKHARKKRKL 258
           SQ  SD+ S  SA K K  S K FD  L ++TN ++ S+    K R L
Sbjct: 36  SQYSSDLSSYASACK-KYSSLKSFDSLLHERTNSIISSLAAQAKTRSL 82


>sp|P08799|MYS2_DICDI Myosin-2 heavy chain OS=Dictyostelium discoideum
            GN=mhcA PE=1 SV=3
          Length = 2116

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
 Frame = -3

Query: 329  DEALEKKTNQLMKSMKHARKKRKLVEMYLGRKSTFEWARRSKKRVHFVDDPNFLRLQRVL 150
            +EA E++ ++++K+++ A +     ++Y   +     AR  ++ +    D       ++ 
Sbjct: 755  EEAREQRISEIIKAIQAATRGWIARKVYKQAREHTVAARIIQQNLRAYIDFKSWPWWKLF 814

Query: 149  TARRPLVPTRMRKSRSGEKARK------------TRKVVLRKSLESTESNLAVQRRRL 12
            +  RPL+  R  +    EK R+            T+K  L KSL+ TESN+   +R+L
Sbjct: 815  SKARPLLKRRNFEKEIKEKEREILELKSNLTDSTTQKDKLEKSLKDTESNVLDLQRQL 872


>sp|Q7ZX41|GNL3_XENLA Guanine nucleotide-binding protein-like 3
           OS=Xenopus laevis GN=gnl3 PE=2 SV=1
          Length = 542

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 3/161 (1%)
 Frame = -3

Query: 536 YKHQLQVDMCMKRLIK*SKYSKYVNHLKNYPLDGSLQMARGRPFSSQVGSDVKSKPSAGK 357
           YK Q +V    +++ K +K S    H K+      + +    PF +Q+  + + +     
Sbjct: 19  YKIQKKVREHKRKVKKEAKKSGPRKHKKD------ITVPNAAPFKAQILQEAQLR----- 67

Query: 356 QKLYS*KEFDEALEKKTNQLMKSMKHARKKRKLVEMYLGRKSTFEWARRSKKRVHFVDDP 177
                 ++  E L++K  Q +   K   KKRKL E         E   + +K     DDP
Sbjct: 68  ------RQQQEELKQK--QKLDRQKEVAKKRKLEEKKNNNSEKKEKRDKKRKETKTPDDP 119

Query: 176 NFL---RLQRVLTARRPLVPTRMRKSRSGEKARKTRKVVLR 63
           + +   ++ +VL     +V     +   G +  +  +VVL+
Sbjct: 120 DVVLCRQVNKVLEQSDVIVEVLDARDPLGSRCSQAEEVVLK 160


>sp|Q9QX47|SON_MOUSE SON protein OS=Mus musculus GN=Son PE=1 SV=1
          Length = 2404

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 28/102 (27%), Positives = 46/102 (45%)
 Frame = -3

Query: 380  KSKPSAGKQKLYS*KEFDEALEKKTNQLMKSMKHARKKRKLVEMYLGRKSTFEWARRSKK 201
            KSK +  + K    K+ D +L  ++ +  KS +H  +KR        RK      R SK 
Sbjct: 1787 KSKKNKNRDKGEKEKKRDSSLRSRSKR-SKSSEHKSRKRTSESRSRARK------RSSKS 1839

Query: 200  RVHFVDDPNFLRLQRVLTARRPLVPTRMRKSRSGEKARKTRK 75
            + H     +  R +R   + R    +R R+S S EK +++ K
Sbjct: 1840 KSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPK 1881


>sp|P18583|SON_HUMAN SON protein OS=Homo sapiens GN=SON PE=1 SV=3
          Length = 2426

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 28/102 (27%), Positives = 46/102 (45%)
 Frame = -3

Query: 380  KSKPSAGKQKLYS*KEFDEALEKKTNQLMKSMKHARKKRKLVEMYLGRKSTFEWARRSKK 201
            KSK +  + K    K+ D +L  ++ +  KS +H  +KR        RK      R SK 
Sbjct: 1802 KSKKNKNRDKGEKEKKRDSSLRSRSKR-SKSSEHKSRKRTSESRSRARK------RSSKS 1854

Query: 200  RVHFVDDPNFLRLQRVLTARRPLVPTRMRKSRSGEKARKTRK 75
            + H     +  R +R   + R    +R R+S S EK +++ K
Sbjct: 1855 KSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPK 1896
tr_hit_id Q5B6K3
Definition tr|Q5B6K3|Q5B6K3_EMENI Putative uncharacterized protein OS=Emericella nidulans
Align length 80
Score (bit) 37.0
E-value 0.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912569|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_D11.
         (556 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5B6K3|Q5B6K3_EMENI Putative uncharacterized protein OS=Emeri...    37   0.70 
tr|Q4UB05|Q4UB05_THEAN ATP-dependent RNA helicase, putative OS=T...    35   2.0  
tr|A7S0C0|A7S0C0_NEMVE Predicted protein OS=Nematostella vectens...    35   2.7  
tr|A2GSD5|A2GSD5_TRIVA TolA protein (Fragment) OS=Trichomonas va...    35   2.7  
tr|Q1Q0J7|Q1Q0J7_9BACT Putative uncharacterized protein OS=Candi...    34   4.6  
tr|A0JLS9|A0JLS9_HUMAN ZEB1 protein (Fragment) OS=Homo sapiens G...    34   4.6  
tr|Q6EDD3|Q6EDD3_9CORV Recombination activating protein 1 (Fragm...    34   6.0  
tr|Q1WVY2|Q1WVY2_COCIM Putative uncharacterized protein OS=Cocci...    34   6.0  
tr|Q65I67|Q65I67_BACLD Penicillin-binding proteins,Glycosyl Tran...    33   7.8  
tr|B6AAJ4|B6AAJ4_9CRYT U1 zinc finger domain-containing protein ...    33   7.8  
tr|A2HPS5|A2HPS5_TRIVA Putative uncharacterized protein (Fragmen...    33   7.8  
tr|A2HE12|A2HE12_TRIVA Putative uncharacterized protein (Fragmen...    33   7.8  
tr|A2ETQ2|A2ETQ2_TRIVA Putative uncharacterized protein OS=Trich...    33   7.8  

>tr|Q5B6K3|Q5B6K3_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN3827.2 PE=4 SV=1
          Length = 781

 Score = 37.0 bits (84), Expect = 0.70
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
 Frame = -3

Query: 422 ARGRPFSSQVGSD--VKSKPSAGKQKLYS*KEFDEALEKKTNQLMKSMKHARKKRKLVE- 252
           A G PFSS    D     K S  K++    ++ +E LE++       M  +RKKRKL+E 
Sbjct: 595 AAGLPFSSSGAGDDAAAKKKSQAKKRAAKKRQEEEELERQ------KMMMSRKKRKLLEK 648

Query: 251 -MYLGRKSTFEWAR-RSKKR 198
            MY  +K+  E A+ RSK+R
Sbjct: 649 MMYSNKKTAEESAKLRSKRR 668


>tr|Q4UB05|Q4UB05_THEAN ATP-dependent RNA helicase, putative
            OS=Theileria annulata GN=TA18240 PE=4 SV=1
          Length = 1732

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
 Frame = -3

Query: 521  QVDMCMKRLIK*SKYSKYVNHLKNYPLDGSLQMARGRPFSSQVGSDVKSK--PSAGKQKL 348
            Q+   +K L +   Y K++NHL+N  + G+        +  +  S VK +   S  K KL
Sbjct: 1524 QITGTLKYLTQAGGYFKFMNHLRNLEVKGTFDPEDMYKYLDEFRSIVKEQFVNSFKKVKL 1583

Query: 347  YS*KEFDEALEKKTNQLMKSMKHARKKRKLVEMYLGRKSTFEWARRSKKRVHF---VDDP 177
               K     + K+  +LM+ +K  +K  K + +     S  +  +R+K  ++     D+ 
Sbjct: 1584 RRVK-----ICKRRRELMRKLKMLKKWNKAIRLKQRIISEIDLKKRTKDYIYVNFTKDER 1638

Query: 176  NFLRLQRVLTARRPLVPTRMRKSRSGEKARKTRKVVLRKSLESTESNLAVQRR 18
            +   ++ +   R  L+  ++ K  + EK  K     + K +   +  L   RR
Sbjct: 1639 SCPPMKNLKKVRFELLKLKLLKGSNSEKLLKRSLNQILKFINRLQIKLINHRR 1691


>tr|A7S0C0|A7S0C0_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g184098 PE=4 SV=1
          Length = 242

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 32/152 (21%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
 Frame = -3

Query: 458 LKNYPLDGSLQM----ARGRPFSSQVGSDVKSKPSAGKQKLYS*KEFDEALEK------K 309
           L++Y ++G  ++    A+ +    Q    +     A ++++   K+++ A+EK      K
Sbjct: 90  LEDYEMEGDEKLLDLEAKLKEVERQEKETLDKLHEAQRREVVLTKDYERAVEKGDNFYAK 149

Query: 308 TNQLMKSMKHARKKRKLVEMYLGRKSTFEWARRSKKRVHFVDDPNFLRLQRVLTARRPLV 129
            ++L + +    +K KL+E     +S FE    S+ ++ F+D+   + LQR   A R + 
Sbjct: 150 IDELQEKVDDTTQKIKLLEE--NEESNFEREEESEDKIKFLDEQVKMYLQRADDAEREIA 207

Query: 128 PTRMRKSR---SGEKARKTRKVVLRKSLESTE 42
                  +     +  R+ R  V+++  E T+
Sbjct: 208 KLERMNDQVQVEIDNKRRARDEVMKEMEEMTD 239


>tr|A2GSD5|A2GSD5_TRIVA TolA protein (Fragment) OS=Trichomonas
           vaginalis G3 GN=TVAG_484940 PE=4 SV=1
          Length = 560

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 32/144 (22%), Positives = 63/144 (43%)
 Frame = -3

Query: 482 KYSKYVNHLKNYPLDGSLQMARGRPFSSQVGSDVKSKPSAGKQKLYS*KEFDEALEKKTN 303
           KY+KY         + + + A+      ++  ++K K  A K K  + ++  E  E+K  
Sbjct: 190 KYTKYYEEKARKAKEEAERKAKEEAERKEL-EELKKKEKARKAKEEAERKAKEEAERKEL 248

Query: 302 QLMKSMKHARKKRKLVEMYLGRKSTFEWARRSKKRVHFVDDPNFLRLQRVLTARRPLVPT 123
           + +K  + ARK ++  E    RK+  E  R+  + +   +     + +    A+      
Sbjct: 249 EELKKKEKARKAKEEAE----RKAKEEAERKELEELKKKEKARKAKEEAERKAKEEAERK 304

Query: 122 RMRKSRSGEKARKTRKVVLRKSLE 51
            + + +  EKARK ++   RK LE
Sbjct: 305 ELEELKKKEKARKAKEEAERKELE 328


>tr|Q1Q0J7|Q1Q0J7_9BACT Putative uncharacterized protein
           OS=Candidatus Kuenenia stuttgartiensis GN=kuste2779 PE=4
           SV=1
          Length = 214

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -3

Query: 476 SKYVNHLKNYPLDGSLQMARGRPFSSQVGSDVKSKPSAGKQKLYS*KEFDEALEKKTNQL 297
           S Y N LK+Y      +++  +P SS+   DVK + +   +KL +  +F   L++K  +L
Sbjct: 78  SVYANRLKHYCAFNIAEISSVKPISSKSSEDVKEREAVALEKLLAPTDFVVLLDEKGREL 137


>tr|A0JLS9|A0JLS9_HUMAN ZEB1 protein (Fragment) OS=Homo sapiens
            GN=ZEB1 PE=2 SV=1
          Length = 1059

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
 Frame = -3

Query: 521  QVDMCMKRLIK*SKYSKYVNHLKNY------PLDGSLQMARGRPFSSQVGSDVKSKPSAG 360
            Q D C KR      YS+++NH  +Y        D + Q   G    S      ++ PS G
Sbjct: 961  QCDKCGKRFSHSGSYSQHMNHRYSYCKREAEERDSTEQEEAGPEILSNEHVGARASPSQG 1020

Query: 359  --KQKLYS*KEFDEALEKKTNQLMKSMKHARKKRK 261
               ++    +E DE  EK+  +  K M+  +KK+K
Sbjct: 1021 DSDERESLTREEDEDSEKEEEEEDKEMEELQKKKK 1055


>tr|Q6EDD3|Q6EDD3_9CORV Recombination activating protein 1
           (Fragment) OS=Coracina novaehollandiae GN=RAG1 PE=4 SV=1
          Length = 957

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = -3

Query: 290 SMKHARKKRKLVEMYLGRKSTFEWARRSKKRVHFVDDPNFLRLQRVLTARRPLVPTRMRK 111
           S+ H +    L E+Y  R ST EW   S K     D  +  R      ++ P V  R R 
Sbjct: 147 SIIHRKFSNTLCEVYFPRNSTMEWQPHSPK----CDVCHTTRRGVKRKSQPPSVQRRKRV 202

Query: 110 SRSGEKARKTRKV 72
             +GE+AR  R+V
Sbjct: 203 KTTGERARLNRRV 215


>tr|Q1WVY2|Q1WVY2_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_10422 PE=4 SV=1
          Length = 182

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
 Frame = -3

Query: 548 LQVLYKHQLQVDMCM----KRLIK*SKYSKYVNHLKNYPL-------DGSLQMARGRPFS 402
           LQ+L++  L     M    KR+ + S   KY N   N+P+       + +         S
Sbjct: 51  LQMLHRMMLNQQKIMQKQQKRICQQSYRHKYTNQQSNHPIHKDHKDSEEAYNPGWSHTIS 110

Query: 401 SQVGSDVKSKPSAGKQKLYS*KEFDEALEKKTNQLMKSMKHARK 270
           +Q     K   S    KL+   +FD A + +TN   K++K   K
Sbjct: 111 AQAREYFKKSDSLSAYKLWKANQFDMACQSRTNLSEKNLKDLLK 154


>tr|Q65I67|Q65I67_BACLD Penicillin-binding proteins,Glycosyl
           Transferase Family 51 OS=Bacillus licheniformis (strain
           DSM 13 / ATCC 14580) GN=ponA PE=4 SV=1
          Length = 895

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
 Frame = -3

Query: 407 FSSQVGSDVKSKPSAGKQKLYS*KEFDEALEKKTNQLMKSMKHARK--KRKLVEMYLGRK 234
           F S+ GS +  +    K  L S    ++ L++K  ++  S +  RK  K +++EMYL R 
Sbjct: 144 FGSEGGSTITQQ--VVKNSLLS---HEKTLKRKVQEVWLSFQLERKYSKDEILEMYLNRI 198

Query: 233 STFEWAR---RSKKRVHFVDDPNFLRLQRVLT-ARRPLVPTRMRKSRSGEKARKTRKVVL 66
                A    ++ ++ + V D N L +++  T A  P  P      +  EKA K R VVL
Sbjct: 199 YFSPQAYGVGKAAEQFYGVTDLNDLTVEQAATLAGMPQSPNNYNPIKHPEKAEKRRNVVL 258


>tr|B6AAJ4|B6AAJ4_9CRYT U1 zinc finger domain-containing protein
           OS=Cryptosporidium muris RN66 GN=CMU_043090 PE=4 SV=1
          Length = 245

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
 Frame = -3

Query: 503 KRLIK*SKYSKYVNHLKNYPLDGSLQMARGRPFSSQVGSDVKSKPSAGKQ--KLYS*KEF 330
           ++L++  KY    + +K+Y +   L+      + S+  SD+K   S      K+++ K  
Sbjct: 41  QKLLRNEKYKAKQDRIKDYMIQEELKKMENPNYISK--SDIKQTTSLSPNLLKIWTNKSE 98

Query: 329 DEALEKKTNQLMKSMKHARKKRKLVEMYLGRKSTFEWARRSKKRVHFVDDPN 174
           D  ++   N+ M      R KRK    + G K T    R S      +DD N
Sbjct: 99  DPFIKNNINEQMNDATSCRAKRK----FEGYKDTIPTKRNSFLSNKAIDDIN 146