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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912570
Clone id YMU001_000020_D12
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACTGGTAACAAGCTAGAGCATTGGAACGTCCCTAAAAACATCTACCACCAAACCATTAG
AAGTCTGGCTCCATCATGCTTGGCAATCACTCCTCTAGGCCAGAAACTTCACATTTGTCA
CCACAATGGCCTAATCTATTTGCATTGACACAATGTTTATCATTAAAATCATGGAATACC
TTGTTCCTTTATCTACTGAGGAAGATAAACATAGTGTCTGCTTACCGCATGTCAGCAAAT
AAGGCAGACAACGAACAAGAATCCCTTTCTAAAAGTGTCCAGCTGAAACATTAATCCAGC
ACAGGCTACAACTGCAAAATTCCAGCAACTGAAACTCTTCTAGAGACTTCAGCAGCTGCT
TACGTATTCAATTATTTGTTTCGAGCACACTATTTCTGAAGGACTTGAAAGCCCAGTAAA
GTACCCTAATCATATTATGACTAAGGCTGCAGGCCCGTCTTATCCTCATTATACAGAACC
TTTTTCAACTATTCAATTTACCAACTGTTCAAACTAGACT
■■Homology search results ■■ -
sp_hit_id P47703
Definition sp|P47703|RNPA_MYCGE Ribonuclease P protein component OS=Mycoplasma genitalium
Align length 29
Score (bit) 30.0
E-value 6.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912570|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_D12.
         (520 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47703|RNPA_MYCGE Ribonuclease P protein component OS=Mycopla...    30   6.9  

>sp|P47703|RNPA_MYCGE Ribonuclease P protein component OS=Mycoplasma
           genitalium GN=rnpA PE=3 SV=1
          Length = 128

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 157 LSLKSWNTLFLYLLRKINIVSAYRMSANK 243
           L+ K    LFL LL++I  V AY+ SANK
Sbjct: 100 LTFKEKQKLFLQLLKRIKEVDAYQTSANK 128
tr_hit_id A3IN83
Definition tr|A3IN83|A3IN83_9CHRO Putative uncharacterized protein OS=Cyanothece sp. CCY 0110
Align length 28
Score (bit) 33.5
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912570|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_D12.
         (520 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3IN83|A3IN83_9CHRO Putative uncharacterized protein OS=Cyano...    33   6.5  

>tr|A3IN83|A3IN83_9CHRO Putative uncharacterized protein
           OS=Cyanothece sp. CCY 0110 GN=CY0110_00340 PE=4 SV=1
          Length = 331

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 112 HLSPQWPNLFALTQCLSLKSWNTLFLYL 195
           +L  +W NL +L  CL LK W  +F YL
Sbjct: 268 NLIKRWSNLISLLDCLKLKFWKLIFYYL 295