NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912577
Clone id YMU001_000020_E07
Library
Length 419
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCTGTGCTTCCTACGTCGCTTCTTCTGAACAGGCATACTTGAGCTACCTAGCTCGGGAAT
TGTATGCTTTTTTGAGCTGTCTAAGCTTGCATGAGAAAGGACACTGAAAGAGTCTGCATT
GGCCTTTGAAGCAATCACAGACCTTGCAAAGCCTCTGGTCGACTCTGGCTGACTTCTTGC
TTGCTGATGTTTTCCACGAGCTTCGTGACACACTACTTGAGGGAGCTGCAAATTGTGGCG
TCTGTCTCGCAATACGTTCCGTGATATTCTTTTCCTTTGAATTTGGATGTTGCATTTGGT
CATCCAAATTTCGACCCTTTATCTTGTTATTCGAACCTACTGGATAGTGCCTTTGACTAT
CCTGCACTAAGTCCTTATTTCTGAAAATTGGGCCAGGTCCTTGCTTGCGTGATTTTGAG
■■Homology search results ■■ -
sp_hit_id O88466
Definition sp|O88466|ZF106_MOUSE Zinc finger protein 106 OS=Mus musculus
Align length 92
Score (bit) 39.7
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912577|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_E07.
         (419 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O88466|ZF106_MOUSE Zinc finger protein 106 OS=Mus musculus GN...    40   0.005
sp|Q11BH8|TYPH_MESSB Putative thymidine phosphorylase OS=Mesorhi...    31   1.7  
sp|Q80KJ6|CAPSD_MASV1 Capsid polyprotein OS=Mink astrovirus 1 GN...    31   2.2  
sp|Q07950|YEH2_YEAST Sterol esterase 2 OS=Saccharomyces cerevisi...    30   4.9  
sp|O74808|CLR1_SCHPO Cryptic loci regulator protein 1 OS=Schizos...    30   4.9  
sp|Q46JH4|TRPC_PROMT Indole-3-glycerol phosphate synthase OS=Pro...    29   6.4  
sp|A2C462|TRPC_PROM1 Indole-3-glycerol phosphate synthase OS=Pro...    29   6.4  
sp|O46232|HUNB_DROAD Protein hunchback (Fragments) OS=Drosophila...    29   6.4  
sp|P72481|UVRA_STRMU UvrABC system protein A OS=Streptococcus mu...    29   8.4  
sp|O88563|MRP3_RAT Canalicular multispecific organic anion trans...    29   8.4  
sp|P38138|GLU2A_YEAST Glucosidase 2 subunit alpha OS=Saccharomyc...    29   8.4  
sp|Q54Q69|DHKG_DICDI Hybrid signal transduction histidine kinase...    29   8.4  

>sp|O88466|ZF106_MOUSE Zinc finger protein 106 OS=Mus musculus
            GN=Zfp106 PE=1 SV=2
          Length = 1888

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
 Frame = -3

Query: 258  NVLRDRRHNLQLPQ----VVCHEARGKHQQARSQPESTR------GFARSVIASKANADS 109
            N+   RRH+ QLP      V H AR  H Q RS P S R      G   S+ ++ ++  +
Sbjct: 945  NIPTQRRHSAQLPSGHIMPVMHSARDLHSQERSTPLSERHAQESTGEGNSLSSNASSGHA 1004

Query: 108  FSVLSHASLDSSKKHTIPELGSSSMPVQKKRR 13
             S L+ A+ DSS      +    S  ++KKRR
Sbjct: 1005 VSSLADAATDSSCTSGAEQTDGHS--IRKKRR 1034


>sp|Q11BH8|TYPH_MESSB Putative thymidine phosphorylase
           OS=Mesorhizobium sp. (strain BNC1) GN=Meso_3880 PE=3
           SV=1
          Length = 509

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -3

Query: 270 RISRNVLRDRRHNLQLPQVVCHEARGKHQQARSQPESTRGFARSVIASKANADSFSVLSH 91
           R+ R +L  +   + +    CH  R +   ARSQ   T G AR V A+    D  +VLSH
Sbjct: 16  RVRRLLLHTQHQPVVVMHTDCHVCRSEGLAARSQVLLTNG-ARQVHATLFQVDGDAVLSH 74

Query: 90  ASLDSSK 70
             +  S+
Sbjct: 75  DEVGLSE 81


>sp|Q80KJ6|CAPSD_MASV1 Capsid polyprotein OS=Mink astrovirus 1
           GN=ORF2 PE=3 SV=1
          Length = 775

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 418 SKSRKQGPGPIFRNKDLVQDSQRHYPVGSNNKIKGRNLDDQMQHPNSKE 272
           S  R QGPG  + +K       RH P  +NNK   R +D++++    KE
Sbjct: 30  SAQRNQGPGKRWNSK-----KGRHMPKNNNNKGMKRTVDNEVKQKLKKE 73


>sp|Q07950|YEH2_YEAST Sterol esterase 2 OS=Saccharomyces cerevisiae
           GN=YEH2 PE=1 SV=1
          Length = 538

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 412 SRKQGPGPIFRNKDLVQDSQRHYPVGSNNKIKGRNLDDQMQHPNSKEKNITE 257
           S K+G   IF       D +  +P+  N+   G NLD+   H N K +N  E
Sbjct: 423 SFKKGAEKIF------PDKKTWFPIAKNDDDSGNNLDNNKLHLNPKRQNSEE 468


>sp|O74808|CLR1_SCHPO Cryptic loci regulator protein 1
           OS=Schizosaccharomyces pombe GN=clr1 PE=1 SV=1
          Length = 1238

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = -3

Query: 213 VCHEARGKHQQARSQPESTRGFARSVIASKANADSFSVLSHASLD------SSKKHTIPE 52
           VC+  R KH +  +Q  S+ G  +S+ +   ++ +   +S  + D       SKK  I +
Sbjct: 487 VCYPTRNKHSEISAQSSSSLGVTKSLASEVYSSSTVDTISKLNTDKDNYLIKSKKEPIQQ 546

Query: 51  LGSSS 37
              SS
Sbjct: 547 KSVSS 551


>sp|Q46JH4|TRPC_PROMT Indole-3-glycerol phosphate synthase
           OS=Prochlorococcus marinus (strain NATL2A) GN=trpC PE=3
           SV=1
          Length = 295

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 331 NNKIKGRNLDDQMQHPNSKEKNITERI 251
           N  IK  NL+  + HP+SK KNI E I
Sbjct: 9   NPSIKVANLEYAIPHPDSKPKNILEEI 35


>sp|A2C462|TRPC_PROM1 Indole-3-glycerol phosphate synthase
           OS=Prochlorococcus marinus (strain NATL1A) GN=trpC PE=3
           SV=1
          Length = 295

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 331 NNKIKGRNLDDQMQHPNSKEKNITERI 251
           N  IK  NL+  + HP+SK KNI E I
Sbjct: 9   NPSIKVANLEYAIPHPDSKPKNILEEI 35


>sp|O46232|HUNB_DROAD Protein hunchback (Fragments) OS=Drosophila
           adiastola GN=hb PE=3 SV=2
          Length = 192

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = -3

Query: 234 NLQLPQVVCHEARGKHQQARSQPESTRGFARSVIASKANADSFSVLSHASLDSSKKHTIP 55
           NLQL Q + H+ + + QQ + QP  T   A ++  S +N D  S L+   L +  +  +P
Sbjct: 59  NLQLEQYLKHQQQQQQQQHQQQPMDTL-CAAAMTPSPSNNDQNSPLTWPGLPNPMQSIMP 117


>sp|P72481|UVRA_STRMU UvrABC system protein A OS=Streptococcus
           mutans GN=uvrA PE=3 SV=2
          Length = 943

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -3

Query: 264 SRNVLRDRRHNLQLPQVVCHEARGKHQQARSQPESTRGFARSVIASKANADSFSVLSHAS 85
           +RNV+R   +  +LP   CH  R   Q    +     G     ++  + AD  S+L+H  
Sbjct: 392 TRNVMRSYMN--ELPCATCHGYRLNDQALSVRVGGKEGLNIGQVSELSIADHLSLLTHLE 449

Query: 84  LDSSKK 67
           L  ++K
Sbjct: 450 LSENEK 455


>sp|O88563|MRP3_RAT Canalicular multispecific organic anion
            transporter 2 OS=Rattus norvegicus GN=Abcc3 PE=2 SV=1
          Length = 1522

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 141  SVIASKANADSFSVLSHASLDSSKKHTIPELGSS 40
            SVI +      F VLS A +DS++K T P + S+
Sbjct: 1154 SVIRAYGRVQDFKVLSDAKVDSNQKTTYPYIASN 1187
tr_hit_id A2AKH3
Definition tr|A2AKH3|A2AKH3_MOUSE Zinc finger protein 106 OS=Mus musculus
Align length 92
Score (bit) 40.0
E-value 0.058
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912577|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_E07.
         (419 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2AKH3|A2AKH3_MOUSE Zinc finger protein 106 OS=Mus musculus G...    40   0.058
tr|Q4DLC7|Q4DLC7_TRYCR Dispersed gene family protein 1 (DGF-1), ...    35   1.4  
tr|B7BPM8|B7BPM8_9CLOT Putative uncharacterized protein OS=Clost...    35   1.9  
tr|B6KK30|B6KK30_TOXGO Putative uncharacterized protein OS=Toxop...    35   1.9  
tr|Q5C6L3|Q5C6L3_SCHJA SJCHGC02391 protein (Fragment) OS=Schisto...    34   4.1  
tr|Q4D8D4|Q4D8D4_TRYCR Dispersed gene family protein 1 (DGF-1), ...    33   5.4  
tr|Q4PEC0|Q4PEC0_USTMA Putative uncharacterized protein OS=Ustil...    33   7.0  
tr|Q4DRQ0|Q4DRQ0_TRYCR Dispersed gene family protein 1 (DGF-1), ...    33   9.2  

>tr|A2AKH3|A2AKH3_MOUSE Zinc finger protein 106 OS=Mus musculus
            GN=Zfp106 PE=4 SV=1
          Length = 1888

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
 Frame = -3

Query: 258  NVLRDRRHNLQLPQ----VVCHEARGKHQQARSQPESTR------GFARSVIASKANADS 109
            N+   RRH+ QLP      V H AR  H Q RS P S R      G   S+ ++ ++  +
Sbjct: 945  NIPTQRRHSAQLPSGHIMPVMHSARDLHSQERSTPLSERHAQESTGEGNSLTSNASSGHA 1004

Query: 108  FSVLSHASLDSSKKHTIPELGSSSMPVQKKRR 13
             S L+ A+ DSS      +    S  ++KKRR
Sbjct: 1005 VSSLADAATDSSCTSGAEQTDGHS--IRKKRR 1034


>tr|Q4DLC7|Q4DLC7_TRYCR Dispersed gene family protein 1 (DGF-1),
           putative (Fragment) OS=Trypanosoma cruzi
           GN=Tc00.1047053506595.10 PE=4 SV=1
          Length = 483

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 25/84 (29%), Positives = 37/84 (44%)
 Frame = +3

Query: 6   ASYVASSEQAYLSYLARELYAFLSCLSLHEKGH*KSLHWPLKQSQTLQSLWSTLADFLLA 185
           A+ V     + L   A  ++A +SC S  E+G   +L + L     L  LW  + + LLA
Sbjct: 119 AAVVTGGPGSILEMQALGVFARMSCASAQERGSTVALPYFLSVFAALDPLWMVVGNALLA 178

Query: 186 DVFHELRDTLLEGAANCGVCLAIR 257
            VF         G  +CGV  A +
Sbjct: 179 AVF---------GCVHCGVTAAFQ 193


>tr|B7BPM8|B7BPM8_9CLOT Putative uncharacterized protein
           OS=Clostridium hylemonae DSM 15053 GN=CLOHYLEM_02478
           PE=4 SV=1
          Length = 137

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
 Frame = -2

Query: 154 RLCKVCDCFKGQ--CRLFQCP-FSCKL-RQLKKAYNSR 53
           R CK+ DC KG+     F+CP + CKL + L+K+YN R
Sbjct: 48  RKCKIKDCIKGKGLAYCFECPDYPCKLIKNLEKSYNKR 85


>tr|B6KK30|B6KK30_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_033440 PE=4 SV=1
          Length = 1460

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -3

Query: 276 RKRISRNVLRDR-RHNLQLPQVVCHEARGKHQQARSQPESTRGFARSVIASKANADSFSV 100
           R+R S++  R   R + + P +    AR  H+   S   S   F+ S ++S + + S S 
Sbjct: 715 RRRHSQSQFRGLFRSSRRYPFLSLAHARLHHRSTSSLSSSASSFSSSSVSSSSTSSSLSS 774

Query: 99  LSHASLDSSKKHTIPELGSSSMPVQKKRRRKH 4
            S  +  SS   +   L SSS       RR+H
Sbjct: 775 FSSLASSSSDSLSSSSLSSSSRTSSSASRRRH 806


>tr|Q5C6L3|Q5C6L3_SCHJA SJCHGC02391 protein (Fragment)
           OS=Schistosoma japonicum PE=2 SV=2
          Length = 165

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 312 EIWMTKCNIQIQRKRISRNVLRDRRHNLQLPQVVCHEARGKHQQARSQP 166
           EI+  K N  I   R+    LR  RHN+Q    VC   RG  Q+ +  P
Sbjct: 38  EIYQKKINRTIIETRLKAKALRKTRHNVQKQTDVCRSDRGSVQEIQFLP 86


>tr|Q4D8D4|Q4D8D4_TRYCR Dispersed gene family protein 1 (DGF-1),
            putative OS=Trypanosoma cruzi GN=Tc00.1047053509925.70
            PE=4 SV=1
          Length = 3452

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 25/84 (29%), Positives = 35/84 (41%)
 Frame = +3

Query: 6    ASYVASSEQAYLSYLARELYAFLSCLSLHEKGH*KSLHWPLKQSQTLQSLWSTLADFLLA 185
            A  V     + L   A  ++A +SC S  E+    +L + L     L  LW  L + LLA
Sbjct: 3055 AMVVTGGLGSILEMQALGVFASMSCASSQERASTVALQYFLSVFAALDPLWMVLGNALLA 3114

Query: 186  DVFHELRDTLLEGAANCGVCLAIR 257
             VF         G  +CGV  A +
Sbjct: 3115 AVF---------GCVHCGVTAAFQ 3129


>tr|Q4PEC0|Q4PEC0_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM01543.1 PE=4 SV=1
          Length = 619

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 28/93 (30%), Positives = 43/93 (46%)
 Frame = -3

Query: 318 RVEIWMTKCNIQIQRKRISRNVLRDRRHNLQLPQVVCHEARGKHQQARSQPESTRGFARS 139
           R E+W  K   Q++R      VL   R N QLP +  H        A +Q  +     ++
Sbjct: 142 RPELWF-KAVKQLER------VLEATRPNAQLPLLSPHNGSANDVAAVAQVRAVAEACKN 194

Query: 138 VIASKANADSFSVLSHASLDSSKKHTIPELGSS 40
           ++ASK    S+ VL HA++ SS    +  L +S
Sbjct: 195 IVASKLR--SYLVLPHATIRSSVTTNLQVLQTS 225


>tr|Q4DRQ0|Q4DRQ0_TRYCR Dispersed gene family protein 1 (DGF-1),
            putative OS=Trypanosoma cruzi GN=Tc00.1047053510175.60
            PE=4 SV=1
          Length = 3464

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +3

Query: 39   LSYLARELYAFLSCLSLHEKGH*KSLHWPLKQSQTLQSLWSTLADFLLADVFHELRDTLL 218
            L   A  ++A +SC+S+ E+    +L + L     L  LW  + + LLA VF        
Sbjct: 3078 LEMQALGVFARMSCVSVQERASTVALPYFLSVFAALDPLWMVVGNALLAAVF-------- 3129

Query: 219  EGAANCGVCLAIR 257
             G  +CGV  A +
Sbjct: 3130 -GCVHCGVTAAFQ 3141