BP912580 |
Clone id |
YMU001_000020_E10 |
Library |
YMU01 |
Length |
530 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000020_E10. |
Accession |
BP912580 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL829Contig1 |
Sequence |
ATAAATCCTCTAATCCATTTAAAACTGCTTTTAGACCTTTGCCACCACTTACTCCGGCTG CTGCTACAGATGAATCCTCTCCAGTTTCAGGGAGCATCGGCTGAGTAAGGCTCTTTCCGG TCCCGGACATTGTAAAGAGGTCAAGCAACTGGCCTTTGTCCATCTTGTCAAGACTTGCGT TTTCGGCATTCACAACAGTGTTTGCCACCGATATCTTGAAACGTTGAAGATTCATGACTT TCTCCTCCAGAGTGCCCCGCATGATCAACCTGTGAACATTGACGACTCTTTTCTGTCCCA GCCTGTGCGCTCTATCCATTGCCTGAAGATCCCGCATGGGATTCCAATCGTGTTCCATAA AAACAACAGTATCAGCTGTTGTCAAGTTCAGACCAAGGGCCCCCACATGAGTTGTCAAAA GTAGAACATCAATTGTAGGATCAGAGTTGAAAGCCTTCACTATTTCAAACCGTTTATCTG GTTCAACCGATCCATCTAGTCGAAGATACGTCACACCTTTCATGTGTGTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O14981 |
Definition |
sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens |
Align length |
139 |
Score (bit) |
209.0 |
E-value |
9.0e-54 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SFY1 |
Definition |
tr|A9SFY1|A9SFY1_PHYPA SNF2 superfamily chromatin remodeling protein OS=Physcomitrella patens subsp. patens |
Align length |
176 |
Score (bit) |
251.0 |
E-value |
2.0e-65 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912580|Adiantum capillus-veneris mRNA, clone: YMU001_000020_E10. (530 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SFY1|A9SFY1_PHYPA SNF2 superfamily chromatin remodeling pro... 251 2e-65 tr|Q6H7U1|Q6H7U1_ORYSJ Putative SNF2 domain-containing protein O... 235 1e-60 tr|A2X169|A2X169_ORYSI Putative uncharacterized protein OS=Oryza... 235 1e-60 tr|B5BT18|B5BT18_ARATH Homolog of human BTAF1 OS=Arabidopsis tha... 234 3e-60 tr|A7PSP4|A7PSP4_VITVI Chromosome chr6 scaffold_28, whole genome... 234 3e-60 tr|A3A3E1|A3A3E1_ORYSJ Putative uncharacterized protein OS=Oryza... 231 2e-59 tr|B8Q5I1|B8Q5I1_TRIMO Mot1 (Fragment) OS=Triticum monococcum PE... 229 5e-59 tr|Q9M378|Q9M378_ARATH TATA box binding protein (TBP) associated... 226 7e-58 tr|Q8BTS9|Q8BTS9_MOUSE Putative uncharacterized protein (Fragmen... 209 9e-53 tr|Q52KH4|Q52KH4_MOUSE Btaf1 protein (Fragment) OS=Mus musculus ... 209 9e-53 tr|A0ZVB6|A0ZVB6_MOUSE TBP-associated factor 170 OS=Mus musculus... 209 9e-53 tr|Q8N6J1|Q8N6J1_HUMAN BTAF1 protein (Fragment) OS=Homo sapiens ... 209 9e-53 tr|Q5VXE8|Q5VXE8_HUMAN BTAF1 RNA polymerase II, B-TFIID transcri... 209 9e-53 tr|Q59HB6|Q59HB6_HUMAN BTAF1 RNA polymerase II, B-TFIID transcri... 209 9e-53 tr|B4E0W6|B4E0W6_HUMAN cDNA FLJ54397, highly similar to TATA-bin... 209 9e-53 tr|Q00ZA8|Q00ZA8_OSTTA Putative SNF2 domain-containing protein (... 206 5e-52 tr|A4S4D1|A4S4D1_OSTLU Predicted protein OS=Ostreococcus lucimar... 206 6e-52 tr|A7SE45|A7SE45_NEMVE Predicted protein (Fragment) OS=Nematoste... 202 1e-50 tr|B8A5E7|B8A5E7_DANRE Novel protein similar to H.sapiens BTAF1,... 201 1e-50 tr|A7SE43|A7SE43_NEMVE Predicted protein OS=Nematostella vectens... 201 1e-50 tr|Q54M42|Q54M42_DICDI SNF2-related domain-containing protein OS... 201 2e-50 tr|B6JW79|B6JW79_SCHJP TATA-binding protein-associated factor MO... 199 7e-50 tr|Q4T5Z8|Q4T5Z8_TETNG Chromosome undetermined SCAF9015, whole g... 198 1e-49 tr|Q5KG64|Q5KG64_CRYNE Helicase, putative OS=Cryptococcus neofor... 197 4e-49 tr|Q55RQ9|Q55RQ9_CRYNE Putative uncharacterized protein OS=Crypt... 197 4e-49 tr|A8NG92|A8NG92_COPC7 Putative uncharacterized protein OS=Copri... 196 5e-49 tr|A2RAN4|A2RAN4_ASPNC Contig An18c0120, complete genome OS=Aspe... 196 5e-49 tr|Q2UUE2|Q2UUE2_ASPOR SNF2 family DNA-dependent ATPase domain-c... 196 6e-49 tr|Q1E0N5|Q1E0N5_COCIM Putative uncharacterized protein OS=Cocci... 196 6e-49 tr|B8NRX9|B8NRX9_ASPFL TBP associated factor (Mot1), putative OS... 196 6e-49
>tr|A9SFY1|A9SFY1_PHYPA SNF2 superfamily chromatin remodeling protein OS=Physcomitrella patens subsp. patens GN=CHR1532 PE=4 SV=1 Length = 2041
Score = 251 bits (641), Expect = 2e-65 Identities = 132/176 (75%), Positives = 142/176 (80%) Frame = -2
Query: 529 THMKGVTYLRLDGSVEPDKRFEIVKAFNSDPTIDVLLLTTHVGALGLNLTTADTVVFMEH 350 THMKGVTYLRLDGSVE DKRF+IVKAFNSDPTIDVLLLTTHVG LGLNLT ADTVVFMEH Sbjct: 1847 THMKGVTYLRLDGSVESDKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTAADTVVFMEH 1906
Query: 349 DWNPMRDLQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASL 170 DWNPMRDLQAMDRAHRLGQKRVVNVHRLIMRGTLEEK+M+LQRFKISVANTV+NAENASL Sbjct: 1907 DWNPMRDLQAMDRAHRLGQKRVVNVHRLIMRGTLEEKIMSLQRFKISVANTVINAENASL 1966
Query: 169 DKMDKGQLLDLFTMSGTGKSLTQPMLPETGEDXXXXXXXXXXXXXXXXXLNGLEDL 2 + MD QLLDLFT+S + + M + GED LN LE+L Sbjct: 1967 NTMDTTQLLDLFTVSKNAQKASTSM--KAGEDESDAAASVGVNKGLKAMLNNLEEL 2020
>tr|Q6H7U1|Q6H7U1_ORYSJ Putative SNF2 domain-containing protein OS=Oryza sativa subsp. japonica GN=OJ9003_G05.21 PE=4 SV=1 Length = 2057
Score = 235 bits (599), Expect = 1e-60 Identities = 124/177 (70%), Positives = 141/177 (79%), Gaps = 1/177 (0%) Frame = -2
Query: 529 THMKGVTYLRLDGSVEPDKRFEIVKAFNSDPTIDVLLLTTHVGALGLNLTTADTVVFMEH 350 +HM+ VTYLRLDGSVEP+KRFEIVKAFNSDPTIDVLLLTTHVG LGLNLT+ADT+VFMEH Sbjct: 1862 SHMRSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEH 1921
Query: 349 DWNPMRDLQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASL 170 DWNPM+DLQAMDRAHRLGQ++VVNVHRLIMRGTLEEKVM+LQRFK+SVAN V+NAENASL Sbjct: 1922 DWNPMKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASL 1981
Query: 169 DKMDKGQLLDLFTMSGTGKSLTQPMLP-ETGEDXXXXXXXXXXXXXXXXXLNGLEDL 2 M+ QLLDLF + T S +LP +G D LNGL++L Sbjct: 1982 KTMNTDQLLDLF--ASTPASRKASVLPSSSGGDQSKDSKGKSGGKGLKSILNGLDEL 2036
>tr|A2X169|A2X169_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05951 PE=4 SV=1 Length = 936
Score = 235 bits (599), Expect = 1e-60 Identities = 124/177 (70%), Positives = 141/177 (79%), Gaps = 1/177 (0%) Frame = -2
Query: 529 THMKGVTYLRLDGSVEPDKRFEIVKAFNSDPTIDVLLLTTHVGALGLNLTTADTVVFMEH 350 +HM+ VTYLRLDGSVEP+KRFEIVKAFNSDPTIDVLLLTTHVG LGLNLT+ADT+VFMEH Sbjct: 741 SHMRSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEH 800
Query: 349 DWNPMRDLQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASL 170 DWNPM+DLQAMDRAHRLGQ++VVNVHRLIMRGTLEEKVM+LQRFK+SVAN V+NAENASL Sbjct: 801 DWNPMKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASL 860
Query: 169 DKMDKGQLLDLFTMSGTGKSLTQPMLP-ETGEDXXXXXXXXXXXXXXXXXLNGLEDL 2 M+ QLLDLF + T S +LP +G D LNGL++L Sbjct: 861 KTMNTDQLLDLF--ASTPASRKASVLPSSSGGDQSKDSKGKSGGKGLKSILNGLDEL 915
>tr|B5BT18|B5BT18_ARATH Homolog of human BTAF1 OS=Arabidopsis thaliana GN=AtBTAF1 PE=2 SV=1 Length = 2045
Score = 234 bits (596), Expect = 3e-60 Identities = 115/138 (83%), Positives = 126/138 (91%) Frame = -2
Query: 526 HMKGVTYLRLDGSVEPDKRFEIVKAFNSDPTIDVLLLTTHVGALGLNLTTADTVVFMEHD 347 HMK VTY+RLDGSV P+KRFEIVKAFNSDPTIDVLLLTTHVG LGLNLT+ADT+VFMEHD Sbjct: 1854 HMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHD 1913
Query: 346 WNPMRDLQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLD 167 WNPMRD QAMDRAHRLGQKRVVNVHRLIMRGTLEEKVM+LQ+FK+SVANTV+NAENAS+ Sbjct: 1914 WNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASMK 1973
Query: 166 KMDKGQLLDLFTMSGTGK 113 M+ QLLDLF + T K Sbjct: 1974 TMNTDQLLDLFASAETSK 1991
>tr|A7PSP4|A7PSP4_VITVI Chromosome chr6 scaffold_28, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023017001 PE=4 SV=1 Length = 1592
Score = 234 bits (596), Expect = 3e-60 Identities = 114/133 (85%), Positives = 126/133 (94%) Frame = -2
Query: 529 THMKGVTYLRLDGSVEPDKRFEIVKAFNSDPTIDVLLLTTHVGALGLNLTTADTVVFMEH 350 THMK VTYLRLDGSVEP+KRFEIVKAFNSDPTIDVLLLTTHVG LGLNLT+ADT+VFMEH Sbjct: 1397 THMKSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEH 1456
Query: 349 DWNPMRDLQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASL 170 DWNPMRD QAMDRAHRLGQ++VVNVHRLIMRGTLEEKVM+LQRFK+SVAN+V+N+ENAS+ Sbjct: 1457 DWNPMRDHQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKLSVANSVINSENASM 1516
Query: 169 DKMDKGQLLDLFT 131 M+ QLLDLFT Sbjct: 1517 KTMNTDQLLDLFT 1529
>tr|A3A3E1|A3A3E1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_005313 PE=4 SV=1 Length = 2514
Score = 231 bits (589), Expect = 2e-59 Identities = 123/173 (71%), Positives = 138/173 (79%), Gaps = 1/173 (0%) Frame = -2
Query: 517 GVTYLRLDGSVEPDKRFEIVKAFNSDPTIDVLLLTTHVGALGLNLTTADTVVFMEHDWNP 338 GVTYLRLDGSVEP+KRFEIVKAFNSDPTIDVLLLTTHVG LGLNLT+ADT+VFMEHDWNP Sbjct: 2323 GVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNP 2382
Query: 337 MRDLQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLDKMD 158 M+DLQAMDRAHRLGQ++VVNVHRLIMRGTLEEKVM+LQRFK+SVAN V+NAENASL M+ Sbjct: 2383 MKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMN 2442
Query: 157 KGQLLDLFTMSGTGKSLTQPMLP-ETGEDXXXXXXXXXXXXXXXXXLNGLEDL 2 QLLDLF + T S +LP +G D LNGL++L Sbjct: 2443 TDQLLDLF--ASTPASRKASVLPSSSGGDQSKDSKGKSGGKGLKSILNGLDEL 2493
>tr|B8Q5I1|B8Q5I1_TRIMO Mot1 (Fragment) OS=Triticum monococcum PE=4 SV=1 Length = 179
Score = 229 bits (585), Expect = 5e-59 Identities = 115/149 (77%), Positives = 130/149 (87%) Frame = -2
Query: 529 THMKGVTYLRLDGSVEPDKRFEIVKAFNSDPTIDVLLLTTHVGALGLNLTTADTVVFMEH 350 +HM+ VTYLRLDGSV+ DKRFEIVK FNSDPTIDVLLLTTHVG LGLNLT+ADT+VFMEH Sbjct: 3 SHMRSVTYLRLDGSVQTDKRFEIVKTFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEH 62
Query: 349 DWNPMRDLQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASL 170 DWNPM+DLQAMDRAHRLGQ++VVNVHRLIMRGTLEEKVM+LQRFK+SVAN V+N+ENASL Sbjct: 63 DWNPMKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINSENASL 122
Query: 169 DKMDKGQLLDLFTMSGTGKSLTQPMLPET 83 M+ QLLDLFT T S +LP + Sbjct: 123 KTMNTDQLLDLFT--STPASRKASVLPSS 149
>tr|Q9M378|Q9M378_ARATH TATA box binding protein (TBP) associated factor (TAF)-like protein OS=Arabidopsis thaliana GN=F24B22.240 PE=4 SV=1 Length = 2049
Score = 226 bits (575), Expect = 7e-58 Identities = 115/149 (77%), Positives = 126/149 (84%), Gaps = 11/149 (7%) Frame = -2
Query: 526 HMKGVTYLRLDGSVEPDKRFEIVKAFNSDPTIDVLLLTTHVGALGLNLTTADTVVFMEHD 347 HMK VTY+RLDGSV P+KRFEIVKAFNSDPTIDVLLLTTHVG LGLNLT+ADT+VFMEHD Sbjct: 1847 HMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHD 1906
Query: 346 WNPMRD-----------LQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVAN 200 WNPMRD QAMDRAHRLGQKRVVNVHRLIMRGTLEEKVM+LQ+FK+SVAN Sbjct: 1907 WNPMRDHQFANIELNKLWQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVAN 1966
Query: 199 TVVNAENASLDKMDKGQLLDLFTMSGTGK 113 TV+NAENAS+ M+ QLLDLF + T K Sbjct: 1967 TVINAENASMKTMNTDQLLDLFASAETSK 1995
>tr|Q8BTS9|Q8BTS9_MOUSE Putative uncharacterized protein (Fragment) OS=Mus musculus GN=Btaf1 PE=2 SV=1 Length = 594
Score = 209 bits (531), Expect = 9e-53 Identities = 100/139 (71%), Positives = 118/139 (84%) Frame = -2
Query: 526 HMKGVTYLRLDGSVEPDKRFEIVKAFNSDPTIDVLLLTTHVGALGLNLTTADTVVFMEHD 347 H+ VTYLRLDGS+ P +R IV FN+DP+IDVLLLTTHVG LGLNLT ADTVVF+EHD Sbjct: 413 HLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHD 472
Query: 346 WNPMRDLQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLD 167 WNPMRDLQAMDRAHR+GQKRVVNV+RLI RGTLEEK+M LQ+FK+++ANTV++ EN+SL Sbjct: 473 WNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQ 532
Query: 166 KMDKGQLLDLFTMSGTGKS 110 M QLLDLFT+ GK+ Sbjct: 533 SMGTDQLLDLFTLDKDGKA 551
>tr|Q52KH4|Q52KH4_MOUSE Btaf1 protein (Fragment) OS=Mus musculus GN=Btaf1 PE=2 SV=1 Length = 990
Score = 209 bits (531), Expect = 9e-53 Identities = 100/139 (71%), Positives = 118/139 (84%) Frame = -2
Query: 526 HMKGVTYLRLDGSVEPDKRFEIVKAFNSDPTIDVLLLTTHVGALGLNLTTADTVVFMEHD 347 H+ VTYLRLDGS+ P +R IV FN+DP+IDVLLLTTHVG LGLNLT ADTVVF+EHD Sbjct: 809 HLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHD 868
Query: 346 WNPMRDLQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMNLQRFKISVANTVVNAENASLD 167 WNPMRDLQAMDRAHR+GQKRVVNV+RLI RGTLEEK+M LQ+FK+++ANTV++ EN+SL Sbjct: 869 WNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQ 928
Query: 166 KMDKGQLLDLFTMSGTGKS 110 M QLLDLFT+ GK+ Sbjct: 929 SMGTDQLLDLFTLDKDGKA 947
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