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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912584
Clone id YMU001_000020_F03
Library
Length 306
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATAAGTCATTAACCACTTTCTCGGAACAATAGTATCCCAAGAGATTAAGAACAGTAGCTC
GGTTATTATGCCAAGAGCCCAAAGTAGCTATACTTACCTTCTGAATTAATAGACCCTTGA
TTTCATTATACCAGCTATTGGCATCCTTTTAAACAAAGACAGGTAATATCCGGCCAAGTT
CGTGCAAGGCTTTAGTTTATTTTTTCCATACTGTGTAACCATCCAACGAATAACTCTATG
AGAAAAAACCAGTTAAAACTACGAAAAAACCAGTCATTATGCCGATTTTTGCAAAGCCCT
GCAGCG
■■Homology search results ■■ -
sp_hit_id P0C6F4
Definition sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1
Align length 32
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912584|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_F03.
         (306 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1 GN=...    29   6.4  
sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 G...    29   6.4  

>sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1 GN=1a
            PE=3 SV=1
          Length = 4445

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 121  FHYTSYWHPFKQRQVIS--GQVRARL*FIFSI 210
            FH  S+W PFK++ V S    V   L FIFS+
Sbjct: 3406 FHVPSFWQPFKKQSVSSNVSWVVENLHFIFSV 3437


>sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 GN=rep
            PE=2 SV=1
          Length = 6733

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 121  FHYTSYWHPFKQRQVIS--GQVRARL*FIFSI 210
            FH  S+W PFK++ V S    V   L FIFS+
Sbjct: 3406 FHVPSFWQPFKKQSVSSNVSWVVENLHFIFSV 3437
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912584|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_F03.
         (306 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******