NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912585
Clone id YMU001_000020_F04
Library
Length 351
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGTGGGGGCCTTTTGGGGTTTGGTGGTGCTGCAGGCGGTTAGAGCTGCAATGGTAGACAT
GTTAAGTCTGCAAAATTCATGAGCAACTGGCGATGAGGGTGAGAAATTAAATTGGAGGCA
CTTAGAAGTAGTACTGCTTCTCCTTGATTAATCTGGTATATAGAGCACCTCATAGAGTAG
TTGTGCTTGACTTGGTGCAAGCTTGGTAGGAGGTCTGAATCTAGCTGGGTGCAGGATGGG
CAACCGGTCACGGCGTTACAGGGGGCACATATATTGCTCACAAAATAGAACACAGCATAT
CACAAAGTAACTGTATGAGGTGGTGGCCAGCTTGCTTGGTGGTCAATATGG
■■Homology search results ■■ -
sp_hit_id Q3U492
Definition sp|Q3U492|CRIM2_MOUSE Cysteine-rich motor neuron 2 protein OS=Mus musculus
Align length 27
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912585|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_F04.
         (351 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3U492|CRIM2_MOUSE Cysteine-rich motor neuron 2 protein OS=Mu...    30   2.8  
sp|Q0KHY3|Y1004_DROME Extracellular domains-containing protein C...    30   4.8  
sp|P06323|TVA3_MOUSE T-cell receptor alpha chain V region CTL-F3...    29   6.3  
sp|Q6UX39|AMTN_HUMAN Amelotin OS=Homo sapiens GN=AMTN PE=1 SV=1        29   8.2  
sp|Q9H1U4|MEGF9_HUMAN Multiple epidermal growth factor-like doma...    29   8.2  
sp|P41357|L_RINDR Large structural protein OS=Rinderpest virus (...    29   8.2  
sp|Q12946|FOXF1_HUMAN Forkhead box protein F1 OS=Homo sapiens GN...    29   8.2  

>sp|Q3U492|CRIM2_MOUSE Cysteine-rich motor neuron 2 protein OS=Mus
            musculus GN=Crim2 PE=1 SV=1
          Length = 1550

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 269  CAPCNAVTGCPSCTQLDSDLLPSLHQV 189
            C  C  + G  SCT+L    LP LHQV
Sbjct: 921  CERCRCLAGQVSCTRLQCPSLPCLHQV 947


>sp|Q0KHY3|Y1004_DROME Extracellular domains-containing protein
            CG31004 OS=Drosophila melanogaster GN=CG31004 PE=1 SV=1
          Length = 1431

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 231  HPARFRPPTKLAPSQAQLLYEVLYIPD*SRRSSTTSKCLQFNFSPSSPVAHEF 73
            HP  +  P  L+P +A  L+   Y P  S   S TS     N++P +   + F
Sbjct: 1324 HPVGYHQP--LSPEEADQLHRQQYSPTFSGLDSRTSGASSINYTPQAATQNRF 1374


>sp|P06323|TVA3_MOUSE T-cell receptor alpha chain V region CTL-F3
           OS=Mus musculus PE=1 SV=1
          Length = 132

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +1

Query: 49  NGRHVKSAKFMSNWR*G*EIKLEALRSSTASP*LIWYIEHLIE*LCLTWCKLGRRSESSW 228
           NG  V   + +     G  + L     ST SP L WY++HL E   L +         S+
Sbjct: 21  NGDSVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLF--------KSF 72

Query: 229 VQDGQPVTALQGAHILLTK*NTAYH 303
             + +P    QG H  L K ++++H
Sbjct: 73  TDNKRP--EHQGFHATLHKSSSSFH 95


>sp|Q6UX39|AMTN_HUMAN Amelotin OS=Homo sapiens GN=AMTN PE=1 SV=1
          Length = 209

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = -1

Query: 267 CPL*RRDRLPILHPARFRPPTKLAPSQAQL 178
           C L     LP L PA   PPTKLAP Q  L
Sbjct: 9   CLLGSTRSLPQLKPALGLPPTKLAPDQGTL 38


>sp|Q9H1U4|MEGF9_HUMAN Multiple epidermal growth factor-like domains
           9 OS=Homo sapiens GN=MEGF9 PE=2 SV=3
          Length = 602

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 263 PCNAVTGCPSCTQLDSDLLPSLHQVKHNY 177
           PC+AVT   SC+   S+L P   Q K  Y
Sbjct: 350 PCSAVTSTGSCSIKSSELEPECDQCKDGY 378


>sp|P41357|L_RINDR Large structural protein OS=Rinderpest virus
            (strain RBOK) GN=L PE=3 SV=1
          Length = 2183

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -2

Query: 278  SNICAPCNAVTGCPSCTQLDSDLLPSLHQVKHNYSMRCSIYQINQGEAVLLLSASNLISH 99
            SN     +  T C     +D   +PSLH++K    + C+   I     ++   A+ L + 
Sbjct: 1357 SNTVLHLHVETDCCVIPMVDHPRIPSLHELKFRREL-CTNPLIYDSAPIIDREATKLYTQ 1415

Query: 98   PHRQLLMNF 72
             HR+ L+ F
Sbjct: 1416 SHRRHLVEF 1424


>sp|Q12946|FOXF1_HUMAN Forkhead box protein F1 OS=Homo sapiens
           GN=FOXF1 PE=2 SV=1
          Length = 354

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -2

Query: 335 ASWPPPHTVTL*YAVFYFVSNICAPCNAVTGCPSCTQLDSDLL--PSLHQVKHN 180
           A+WPP  +  L     Y      +PCN     P    L +  L  P LHQ  HN
Sbjct: 243 AAWPPSASAALNSGASYIKQQPLSPCNPAAN-PLSGSLSTHSLEQPYLHQNSHN 295
tr_hit_id A6QA37
Definition tr|A6QA37|A6QA37_SULNB Sensor protein OS=Sulfurovum sp. (strain NBC37-1)
Align length 41
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912585|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_F04.
         (351 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6QA37|A6QA37_SULNB Sensor protein OS=Sulfurovum sp. (strain ...    38   0.29 
tr|B0ENF5|B0ENF5_ENTDI Protein serine/threonine kinase, putative...    35   2.4  
tr|Q29CE3|Q29CE3_DROPS GA15929 OS=Drosophila pseudoobscura pseud...    34   3.1  
tr|B4GN63|B4GN63_DROPE GL13953 OS=Drosophila persimilis GN=GL139...    34   3.1  
tr|B4K6G9|B4K6G9_DROMO GI10435 OS=Drosophila mojavensis GN=GI104...    34   4.1  
tr|B2V2V8|B2V2V8_CLOBA Oligopeptide transport ATP-binding protei...    33   5.4  
tr|Q8PSM3|Q8PSM3_METMA Competence-like protein OS=Methanosarcina...    33   7.0  

>tr|A6QA37|A6QA37_SULNB Sensor protein OS=Sulfurovum sp. (strain
           NBC37-1) GN=SUN_1395 PE=4 SV=1
          Length = 645

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -2

Query: 263 PCNAVTGCPSCTQLDSDLLPSLHQV-----KHNYSMRCSIY 156
           PCN++ G P C +LD + +P L+ V     KH YS   S Y
Sbjct: 387 PCNSIPGTPKCIELDPEKIPYLYMVEGSKNKHRYSKNYSRY 427


>tr|B0ENF5|B0ENF5_ENTDI Protein serine/threonine kinase, putative
           OS=Entamoeba dispar SAW760 GN=EDI_294780 PE=4 SV=1
          Length = 1461

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 284 FVSNICAPCNAVTGCPSCTQLDSDLLPSLHQVKHN 180
           ++++ C PC  +TGC +C+Q +S     +   KH+
Sbjct: 409 YLNSTCYPCEDITGCSTCSQTESKCFSCIEGYKHD 443


>tr|Q29CE3|Q29CE3_DROPS GA15929 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA15929 PE=4 SV=1
          Length = 1458

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 234  LHPARFRPPTKLAPSQAQLLYEVLYIPD*SRRSSTTSKCLQFNFSPSSPVAHEF 73
            +HPA +  P  L+P +A  L++  Y P  S   S TS     N++P S   + F
Sbjct: 1341 IHPAGYHQP--LSPEEADRLHQQQYSPTFSGLDSRTSAASSINYTPQSAAQNRF 1392


>tr|B4GN63|B4GN63_DROPE GL13953 OS=Drosophila persimilis GN=GL13953
            PE=4 SV=1
          Length = 1458

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 234  LHPARFRPPTKLAPSQAQLLYEVLYIPD*SRRSSTTSKCLQFNFSPSSPVAHEF 73
            +HPA +  P  L+P +A  L++  Y P  S   S TS     N++P S   + F
Sbjct: 1341 IHPAGYHQP--LSPEEADRLHQQQYSPTFSGLDSRTSAASSINYTPQSAAQNRF 1392


>tr|B4K6G9|B4K6G9_DROMO GI10435 OS=Drosophila mojavensis GN=GI10435
            PE=4 SV=1
          Length = 1477

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 234  LHPARFRPPTKLAPSQAQLLYEVLYIPD*SRRSSTTSKCLQFNFSPSSPVAHEF 73
            +HPA +  P  L+P +A  L++  Y P  S   S TS     N++P S   + F
Sbjct: 1361 IHPAGYHQP--LSPEEADQLHQQQYSPTFSGVDSRTSAASSINYTPQSAAQNRF 1412


>tr|B2V2V8|B2V2V8_CLOBA Oligopeptide transport ATP-binding protein
           AppF OS=Clostridium botulinum (strain Alaska E43 / type
           E3) GN=CLH_1829 PE=4 SV=1
          Length = 325

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 260 CNAVTGCPSCTQLDSDLLPSLHQVKHNYSMRCSIY 156
           C   T CP+CT +  ++ P L ++K+ +++ C +Y
Sbjct: 286 CRFHTRCPNCTNICKEIEPKLVELKNGHTVACHLY 320


>tr|Q8PSM3|Q8PSM3_METMA Competence-like protein OS=Methanosarcina
           mazei GN=comA PE=4 SV=1
          Length = 471

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 224 LDSDLLPSLHQVKHNYSMRCSIYQINQGEAVLLLSASNLISHPHRQLL 81
           LDSD+L + H    + S    I  ++ G +++ + A N   HPH ++L
Sbjct: 240 LDSDILKAGHHASRSGSGEAFISSVSPGISIIEVGAGNDYGHPHEEVL 287