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NBDC - LSDB Archive
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BP912591
Clone id YMU001_000020_F10
Library
Length 391
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGGTTTACAGACTACCGTGAAACAGACAGCAGCGTTAAATACTCCACAACTTGAGCGCCA
AAAAATTTGAGAACTTCATGTAGCCATAACAACCTCTATGAGAACATGTTGTAGAATGTA
TTCACTCGAGATTACTTCTGCATGCACAAAATTCTCTCCAGAGCTCTTTGGATGTCTGGC
TTGCTAAATACAGAAAATAACTTTGTGAGACAAGGAAGCAGCAGAGCAATGAATTCGTTC
AGTTAAACAAGCTCAATGAAAGCCATAGGTGCATTGTCCCCTTTTCTGGGCATGGTTCTG
ATGATGCGGGTATAGCCACCGTTTCGTTCTCCATAGCGATCTGGAACCTCAGCAAACAGG
GCATGTACAAGGCCCTTATCATACAAGTACC
■■Homology search results ■■ -
sp_hit_id Q9M385
Definition sp|Q9M385|RK17_ARATH 50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana
Align length 48
Score (bit) 93.2
E-value 4.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912591|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_F10.
         (391 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M385|RK17_ARATH 50S ribosomal protein L17, chloroplastic OS...    93   4e-19
sp|O80363|RK17_TOBAC 50S ribosomal protein L17, chloroplastic OS...    92   1e-18
sp|A5GVY4|RL17_SYNR3 50S ribosomal protein L17 OS=Synechococcus ...    80   4e-15
sp|Q0ID29|RL17_SYNS3 50S ribosomal protein L17 OS=Synechococcus ...    79   5e-15
sp|Q7V522|RL17_PROMM 50S ribosomal protein L17 OS=Prochlorococcu...    79   7e-15
sp|A2CC52|RL17_PROM3 50S ribosomal protein L17 OS=Prochlorococcu...    79   7e-15
sp|Q3AW69|RL17_SYNS9 50S ribosomal protein L17 OS=Synechococcus ...    79   9e-15
sp|B0C429|RL17_ACAM1 50S ribosomal protein L17 OS=Acaryochloris ...    78   1e-14
sp|Q7U4H6|RL17_SYNPX 50S ribosomal protein L17 OS=Synechococcus ...    78   2e-14
sp|Q7UZW7|RL17_PROMP 50S ribosomal protein L17 OS=Prochlorococcu...    78   2e-14
sp|A2BYR2|RL17_PROM5 50S ribosomal protein L17 OS=Prochlorococcu...    77   4e-14
sp|A3PF24|RL17_PROM0 50S ribosomal protein L17 OS=Prochlorococcu...    77   4e-14
sp|Q8DMK9|RL17_THEEB 50S ribosomal protein L17 OS=Thermosynechoc...    76   5e-14
sp|Q7V9Y6|RL17_PROMA 50S ribosomal protein L17 OS=Prochlorococcu...    76   5e-14
sp|Q3AMQ4|RL17_SYNSC 50S ribosomal protein L17 OS=Synechococcus ...    76   6e-14
sp|Q3MF96|RL17_ANAVT 50S ribosomal protein L17 OS=Anabaena varia...    75   8e-14
sp|Q8YPK4|RL17_ANASP 50S ribosomal protein L17 OS=Anabaena sp. (...    75   8e-14
sp|Q110D2|RL17_TRIEI 50S ribosomal protein L17 OS=Trichodesmium ...    75   1e-13
sp|Q46IT3|RL17_PROMT 50S ribosomal protein L17 OS=Prochlorococcu...    75   1e-13
sp|A2C4X6|RL17_PROM1 50S ribosomal protein L17 OS=Prochlorococcu...    75   1e-13
sp|B0JY37|RL17_MICAN 50S ribosomal protein L17 OS=Microcystis ae...    75   1e-13
sp|P73296|RL17_SYNY3 50S ribosomal protein L17 OS=Synechocystis ...    74   2e-13
sp|A5GIS1|RL17_SYNPW 50S ribosomal protein L17 OS=Synechococcus ...    74   2e-13
sp|A2BTB4|RL17_PROMS 50S ribosomal protein L17 OS=Prochlorococcu...    74   2e-13
sp|Q318K8|RL17_PROM9 50S ribosomal protein L17 OS=Prochlorococcu...    74   2e-13
sp|A8G738|RL17_PROM2 50S ribosomal protein L17 OS=Prochlorococcu...    74   2e-13
sp|O24711|RL17_SYNP6 50S ribosomal protein L17 OS=Synechococcus ...    71   2e-12
sp|Q31L31|RL17_SYNE7 50S ribosomal protein L17 OS=Synechococcus ...    71   2e-12
sp|Q0S3E6|RL17_RHOSR 50S ribosomal protein L17 OS=Rhodococcus sp...    69   1e-11
sp|Q7NFF6|RL17_GLOVI 50S ribosomal protein L17 OS=Gloeobacter vi...    68   2e-11

>sp|Q9M385|RK17_ARATH 50S ribosomal protein L17, chloroplastic
           OS=Arabidopsis thaliana GN=RPL17 PE=2 SV=1
          Length = 211

 Score = 93.2 bits (230), Expect = 4e-19
 Identities = 41/48 (85%), Positives = 47/48 (97%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           Y+Y+K +VHALFAEVPDRYGERNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 164 YIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211


>sp|O80363|RK17_TOBAC 50S ribosomal protein L17, chloroplastic
           OS=Nicotiana tabacum GN=RPL17 PE=2 SV=1
          Length = 205

 Score = 91.7 bits (226), Expect = 1e-18
 Identities = 40/48 (83%), Positives = 47/48 (97%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           ++Y+K +VHALFAEVPDRYGERNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 158 FIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 205


>sp|A5GVY4|RL17_SYNR3 50S ribosomal protein L17 OS=Synechococcus sp.
           (strain RCC307) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 36/48 (75%), Positives = 42/48 (87%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           Y+YDK LVHALF +  +RYG+RNGGYTRIIRT+PR+GDNA MA IELV
Sbjct: 69  YIYDKQLVHALFDKASERYGDRNGGYTRIIRTVPRRGDNAEMAIIELV 116


>sp|Q0ID29|RL17_SYNS3 50S ribosomal protein L17 OS=Synechococcus sp.
           (strain CC9311) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 36/48 (75%), Positives = 41/48 (85%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           Y+YDK LVHALF + P RYG+RNGGYTRI RT+PR+GDNA MA IELV
Sbjct: 69  YVYDKQLVHALFDKAPTRYGDRNGGYTRITRTVPRRGDNAEMAIIELV 116


>sp|Q7V522|RL17_PROMM 50S ribosomal protein L17 OS=Prochlorococcus
           marinus (strain MIT 9313) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 36/48 (75%), Positives = 41/48 (85%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           Y+YDK LVHALF +  DRYG+R GGYTRIIRT+PR+GDNA MA IELV
Sbjct: 69  YIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIELV 116


>sp|A2CC52|RL17_PROM3 50S ribosomal protein L17 OS=Prochlorococcus
           marinus (strain MIT 9303) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 36/48 (75%), Positives = 41/48 (85%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           Y+YDK LVHALF +  DRYG+R GGYTRIIRT+PR+GDNA MA IELV
Sbjct: 69  YIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIELV 116


>sp|Q3AW69|RL17_SYNS9 50S ribosomal protein L17 OS=Synechococcus sp.
           (strain CC9902) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 78.6 bits (192), Expect = 9e-15
 Identities = 36/48 (75%), Positives = 40/48 (83%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           Y+YDK LVHALF + P RYGER GGYTRI RT+PR+GDNA MA IELV
Sbjct: 69  YIYDKQLVHALFDKAPTRYGERKGGYTRITRTVPRRGDNAEMAIIELV 116


>sp|B0C429|RL17_ACAM1 50S ribosomal protein L17 OS=Acaryochloris
           marina (strain MBIC 11017) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 36/47 (76%), Positives = 41/47 (87%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIEL 249
           Y+YDK LVHALF +V DRYG+RNGGYTRIIRT+ R+GDNA MA IEL
Sbjct: 69  YIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIEL 115


>sp|Q7U4H6|RL17_SYNPX 50S ribosomal protein L17 OS=Synechococcus sp.
           (strain WH8102) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 35/48 (72%), Positives = 40/48 (83%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           Y+YDK LVHALF + PDRY +R GGYTRI RT+PR+GDNA MA IELV
Sbjct: 69  YIYDKQLVHALFDKAPDRYSDRKGGYTRITRTVPRRGDNAEMAIIELV 116


>sp|Q7UZW7|RL17_PROMP 50S ribosomal protein L17 OS=Prochlorococcus
           marinus subsp. pastoris (strain CCMP1378 / MED4) GN=rplQ
           PE=3 SV=1
          Length = 116

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 35/48 (72%), Positives = 41/48 (85%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           Y+YDK LVH+LF +  +RYGERNGGYTRI+RT+ RKGDNA MA IELV
Sbjct: 69  YIYDKKLVHSLFEKAQERYGERNGGYTRIVRTVARKGDNAQMAIIELV 116
tr_hit_id A9SG27
Definition tr|A9SG27|A9SG27_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 48
Score (bit) 95.5
E-value 1.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912591|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_F10.
         (391 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SG27|A9SG27_PHYPA Predicted protein OS=Physcomitrella paten...    96   1e-18
tr|A9RZ43|A9RZ43_PHYPA Predicted protein OS=Physcomitrella paten...    96   1e-18
tr|A9PC28|A9PC28_POPTR Putative uncharacterized protein OS=Popul...    92   2e-17
tr|A7QBZ8|A7QBZ8_VITVI Chromosome chr10 scaffold_76, whole genom...    91   4e-17
tr|A9P8K2|A9P8K2_POPTR Putative uncharacterized protein OS=Popul...    90   5e-17
tr|A9P1T8|A9P1T8_PICSI Putative uncharacterized protein OS=Picea...    89   1e-16
tr|B7FGK1|B7FGK1_MEDTR Putative uncharacterized protein OS=Medic...    87   4e-16
tr|Q3LVI3|Q3LVI3_TAROF TO73-3 (Fragment) OS=Taraxacum officinale...    84   4e-15
tr|Q75GR6|Q75GR6_ORYSJ Os03g0815400 protein OS=Oryza sativa subs...    83   8e-15
tr|A2XNC1|A2XNC1_ORYSI Putative uncharacterized protein OS=Oryza...    83   8e-15
tr|B4FZB4|B4FZB4_MAIZE 50S ribosomal protein L17 OS=Zea mays PE=...    82   2e-14
tr|A3IQ29|A3IQ29_9CHRO 50S ribosomal protein L17 OS=Cyanothece s...    80   4e-14
tr|B8CAZ9|B8CAZ9_THAPS RK17, ribosomal protein 17 50S large ribo...    80   5e-14
tr|Q060U5|Q060U5_9SYNE 50S ribosomal protein L17 OS=Synechococcu...    79   1e-13
tr|A3YUJ5|A3YUJ5_9SYNE 50S ribosomal protein L17 OS=Synechococcu...    78   2e-13
tr|B2ITN0|B2ITN0_NOSP7 Ribosomal protein L17 OS=Nostoc punctifor...    77   3e-13
tr|B1WQT6|B1WQT6_CYAA5 50S ribosomal protein L17 OS=Cyanothece (...    77   3e-13
tr|B1X4Y4|B1X4Y4_PAUCH 50S ribosomal protein L17 OS=Paulinella c...    77   3e-13
tr|A9BCM3|A9BCM3_PROM4 50S ribosomal protein L17 OS=Prochlorococ...    77   4e-13
tr|Q05QD7|Q05QD7_9SYNE 50S ribosomal protein L17 OS=Synechococcu...    77   4e-13
tr|B5IPS7|B5IPS7_9CHRO Ribosomal protein L17 OS=Cyanobium sp. PC...    77   6e-13
tr|B4VPN0|B4VPN0_9CYAN Ribosomal protein L17 OS=Microcoleus chth...    77   6e-13
tr|B1XJI3|B1XJI3_SYNP2 Ribosomal protein L17 OS=Synechococcus sp...    76   7e-13
tr|B7K223|B7K223_SYNP8 Ribosomal protein L17 OS=Synechococcus sp...    76   7e-13
tr|B4BXS9|B4BXS9_9CHRO Ribosomal protein L17 OS=Cyanothece sp. P...    76   7e-13
tr|A0ZG50|A0ZG50_NODSP 50S ribosomal protein L17 OS=Nodularia sp...    76   7e-13
tr|B7FP95|B7FP95_PHATR Predicted protein OS=Phaeodactylum tricor...    76   7e-13
tr|B4WHD7|B4WHD7_9SYNE Ribosomal protein L17 OS=Synechococcus sp...    75   1e-12
tr|Q15GA8|Q15GA8_RHDSA Chloroplast 50S ribosomal protein 17 (Fra...    75   1e-12
tr|A8YCU4|A8YCU4_MICAE 50S ribosomal protein L17 OS=Microcystis ...    75   2e-12

>tr|A9SG27|A9SG27_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_129247 PE=3 SV=1
          Length = 129

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 44/48 (91%), Positives = 47/48 (97%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           +LYDK LVH+LFAEVP+RYGERNGGYTRIIRTMPRKGDNAPMAFIELV
Sbjct: 82  FLYDKQLVHSLFAEVPERYGERNGGYTRIIRTMPRKGDNAPMAFIELV 129


>tr|A9RZ43|A9RZ43_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_121675 PE=3 SV=1
          Length = 129

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 44/48 (91%), Positives = 47/48 (97%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           +LYDK LVH+LFAEVP+RYGERNGGYTRIIRTMPRKGDNAPMAFIELV
Sbjct: 82  FLYDKQLVHSLFAEVPERYGERNGGYTRIIRTMPRKGDNAPMAFIELV 129


>tr|A9PC28|A9PC28_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 224

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 40/48 (83%), Positives = 47/48 (97%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           ++Y+K +VHALFAEVPDRYGERNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 177 FIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 224


>tr|A7QBZ8|A7QBZ8_VITVI Chromosome chr10 scaffold_76, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035173001
           PE=3 SV=1
          Length = 116

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 39/48 (81%), Positives = 47/48 (97%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           ++Y+K +VHALFAEVPDRYG+RNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 69  FIYEKQIVHALFAEVPDRYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 116


>tr|A9P8K2|A9P8K2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 227

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 39/48 (81%), Positives = 47/48 (97%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           ++++K +VHALFAEVPDRYGERNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 180 FIFEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 227


>tr|A9P1T8|A9P1T8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 207

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 40/48 (83%), Positives = 45/48 (93%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           ++YDK LVHALFAE  +RYGERNGGYTRIIRT+PR+GDNAPMAFIELV
Sbjct: 160 FIYDKQLVHALFAEAQERYGERNGGYTRIIRTLPRRGDNAPMAFIELV 207


>tr|B7FGK1|B7FGK1_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 214

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 38/48 (79%), Positives = 46/48 (95%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           ++Y+K +VHALFAEV +RYGERNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 167 FIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 214


>tr|Q3LVI3|Q3LVI3_TAROF TO73-3 (Fragment) OS=Taraxacum officinale
           GN=To73-3 PE=2 SV=1
          Length = 45

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 37/45 (82%), Positives = 44/45 (97%)
 Frame = -3

Query: 380 DKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           ++ +VHALFAEVP+RYGERNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 1   EQQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 45


>tr|Q75GR6|Q75GR6_ORYSJ Os03g0815400 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0042K11.2 PE=2 SV=1
          Length = 210

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           ++Y+K +VHALFAEV DRYGER GGYTRII T PR+GDNAPMA+IELV
Sbjct: 163 FIYEKHIVHALFAEVADRYGEREGGYTRIIPTFPRRGDNAPMAYIELV 210


>tr|A2XNC1|A2XNC1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14055 PE=3 SV=1
          Length = 210

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = -3

Query: 389 YLYDKGLVHALFAEVPDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 246
           ++Y+K +VHALFAEV DRYGER GGYTRII T PR+GDNAPMA+IELV
Sbjct: 163 FIYEKHIVHALFAEVADRYGEREGGYTRIIPTFPRRGDNAPMAYIELV 210