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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912608
Clone id YMU001_000020_H03
Library
Length 451
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGAAAACGCATCTCTTCATTTTAGGATGTTTAAGGCAGAAGAGTGTCAGAAGTTTGTCC
AGTGGTGTCTCCCACATATATTGAATGTTGTGGATGGGATAAGCAAGGAGGACATTCATA
TAGGAATGCTACTAGTAGACATATCACATATGTTCTTTGATTGCAGCAGACAAAAGGGAT
GGACAAAGAAATATATTGATGTATGCCGCTCTTTGTTATTATTTTGGCGTGTTCTGTCAG
AAGAGTATTATGAGGCAAACCTCCTCTCCTTTGGAGCATGTTGCAGGAAATGGTGAAATT
TTGGATGACATCATTCGCCATGGATCCCATGATGTTACATGGTGCTTTTCGCATGAACGT
GCTGTCTCAGGATATTTAAGTATACATACTAATAACAAGTGAAATGAACTCTCTTACAGC
AAGTTTCACAGTCGGGTCTTGTGCACACAAG
■■Homology search results ■■ -
sp_hit_id Q3YSH6
Definition sp|Q3YSH6|SYL_EHRCJ Leucyl-tRNA synthetase OS=Ehrlichia canis (strain Jake)
Align length 47
Score (bit) 31.6
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912608|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_H03.
         (451 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3YSH6|SYL_EHRCJ Leucyl-tRNA synthetase OS=Ehrlichia canis (s...    32   1.7  
sp|O00322|UPK1A_HUMAN Uroplakin-1a OS=Homo sapiens GN=UPK1A PE=2...    30   6.3  
sp|P38572|UPK1A_BOVIN Uroplakin-1a OS=Bos taurus GN=UPK1A PE=1 SV=1    30   6.3  
sp|Q68XM3|SYD_RICTY Aspartyl-tRNA synthetase OS=Rickettsia typhi...    30   6.3  
sp|A0LNY9|MURC_SYNFM UDP-N-acetylmuramate--L-alanine ligase OS=S...    30   6.3  
sp|A6US09|SYA_METVS Alanyl-tRNA synthetase OS=Methanococcus vann...    29   8.0  
sp|Q9D132|UPK1A_MOUSE Uroplakin-1a OS=Mus musculus GN=Upk1a PE=1...    29   8.2  
sp|Q8K9S3|DPO3A_BUCAP DNA polymerase III subunit alpha OS=Buchne...    29   8.2  

>sp|Q3YSH6|SYL_EHRCJ Leucyl-tRNA synthetase OS=Ehrlichia canis
           (strain Jake) GN=leuS PE=3 SV=1
          Length = 829

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -2

Query: 282 NMLQRRGGLPHNTLLTEHAKIITKSGIHQYISLSIPFVCCNQRTYVI 142
           +++Q+      N L+T+ +  + K GI+  + +  PF+C N   YV+
Sbjct: 267 DIIQQINDFDKNNLITDASSTVEKFGINSGLVVKHPFLCMNLPVYVV 313


>sp|O00322|UPK1A_HUMAN Uroplakin-1a OS=Homo sapiens GN=UPK1A PE=2
           SV=1
          Length = 258

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 189 SLSIPFVCCNQR----TYVICLLVAFLYECPPCLSHPQHSIYV 73
           S  +    C +R    TY++ +L+ +++EC  C++   H  Y+
Sbjct: 79  SFGVGAALCRRRSMVLTYLVLMLIVYIFECASCITSYTHRDYM 121


>sp|P38572|UPK1A_BOVIN Uroplakin-1a OS=Bos taurus GN=UPK1A PE=1 SV=1
          Length = 258

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 189 SLSIPFVCCNQR----TYVICLLVAFLYECPPCLSHPQHSIYV 73
           S  +    C +R    TY+I +L+ +++EC  C++   H  Y+
Sbjct: 79  SFGVGAALCRRRSMILTYLILMLIIYIFECASCITSYTHRDYM 121


>sp|Q68XM3|SYD_RICTY Aspartyl-tRNA synthetase OS=Rickettsia typhi
           GN=aspS PE=3 SV=1
          Length = 605

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 294 TISCNMLQRRGGLPHNTLLTEHAKIITKSGIHQYISLSIPFVCCNQR 154
           T+S  ++ R  G  +N LLT H +++    I +  S  +PFV  N++
Sbjct: 73  TVSGTVVARSEGTINNKLLTGHIEVLAVECIVESASSPLPFVINNEK 119


>sp|A0LNY9|MURC_SYNFM UDP-N-acetylmuramate--L-alanine ligase
           OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
           MPOB) GN=murC PE=3 SV=1
          Length = 469

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 187 RNILMYAALCYYFG-VFCQKSIMRQTSSPLEHVAGNGEILDDIIRHGSHDVTWCFSHERA 363
           R ++   A C+Y   V     I   + +P+  V G   +  +I  HG HD+ +C + E A
Sbjct: 365 RALMEQFARCFYHSDVLLVTEIYAASETPIPGVTGE-RLSQEIASHGHHDLHFCETVESA 423

Query: 364 VS 369
           +S
Sbjct: 424 LS 425


>sp|A6US09|SYA_METVS Alanyl-tRNA synthetase OS=Methanococcus
           vannielii (strain SB / ATCC 35089 / DSM 1224) GN=alaS
           PE=3 SV=1
          Length = 892

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 81  LNVVDGISKEDIHIGMLLVDISHMFFDCSRQKGWTKKYIDVCRSLL 218
           LN +D + +   H+    +   H F      K WT K +++C  L+
Sbjct: 129 LNDIDNVGRTGRHLTCFTMGAHHAFNSKDEYKYWTDKTVELCFELM 174


>sp|Q9D132|UPK1A_MOUSE Uroplakin-1a OS=Mus musculus GN=Upk1a PE=1
           SV=1
          Length = 257

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 189 SLSIPFVCCNQR----TYVICLLVAFLYECPPCLSHPQHSIYV 73
           S  +    C +R    TY++ +L+ +++EC  C++   H  Y+
Sbjct: 78  SFGVGAALCRRRYMILTYLLLMLIVYIFECASCITSYTHRDYM 120


>sp|Q8K9S3|DPO3A_BUCAP DNA polymerase III subunit alpha OS=Buchnera
           aphidicola subsp. Schizaphis graminum GN=dnaE PE=3 SV=1
          Length = 1161

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
 Frame = +1

Query: 160 IAADKRDGQRNILMYAALCYYFGVFCQKSI------MRQTSSPLEHVAG--NGEILDDII 315
           + A  +DG +N+++  +  Y  G FC+K +      + + ++ L  ++G   GEI   ++
Sbjct: 86  LLATNQDGYKNLILLISRAYKKGYFCEKYVTIEKKWLSELNNGLILLSGGCQGEIGKTLL 145

Query: 316 RHGSHDVTWCFS-HERAVSG--YLSIHTNNK*NELSY 417
           R  +  ++ C   +E+  SG  YL +    + NE  Y
Sbjct: 146 RGQTSLISDCLHFYEKYFSGFYYLELIRTYRENEEKY 182
tr_hit_id Q2PR20
Definition tr|Q2PR20|Q2PR20_FUGRU Odorant receptor OS=Fugu rubripes
Align length 75
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912608|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_H03.
         (451 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2PR20|Q2PR20_FUGRU Odorant receptor OS=Fugu rubripes GN=OR37...    35   1.4  
tr|B6HEM1|B6HEM1_PENCH Pc20g07890 protein OS=Penicillium chrysog...    35   2.5  
tr|Q2UIQ1|Q2UIQ1_ASPOR Predicted protein OS=Aspergillus oryzae G...    33   5.5  
tr|B1NTA7|B1NTA7_SCHMD Beta-catenin-like protein 1 OS=Schmidtea ...    33   7.1  
tr|B0LMF5|B0LMF5_SCHMD Beta-catenin-1 OS=Schmidtea mediterranea ...    33   7.1  
tr|B1WXP5|B1WXP5_CYAA5 Putative uncharacterized protein OS=Cyano...    33   9.3  
tr|B4MNB1|B4MNB1_DROWI GK17098 OS=Drosophila willistoni GN=GK170...    33   9.3  
tr|Q2PR01|Q2PR01_FUGRU Odorant receptor OS=Fugu rubripes GN=OR67...    33   9.4  

>tr|Q2PR20|Q2PR20_FUGRU Odorant receptor OS=Fugu rubripes
           GN=OR3763-2 PE=3 SV=1
          Length = 309

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 22/75 (29%), Positives = 37/75 (49%)
 Frame = +3

Query: 39  EECQKFVQWCLPHILNVVDGISKEDIHIGMLLVDISHMFFDCSRQKGWTKKYIDVCRSLL 218
           EE  KF+Q CLPH+ + +       + IG LL D+ HM +D  +     + ++ +    L
Sbjct: 228 EERMKFMQTCLPHLSSAI-------VVIGCLLFDLLHMRYDSEKLSESARNFMAI--QFL 278

Query: 219 LFWRVLSEEYYEANL 263
           LF  +++   Y   L
Sbjct: 279 LFPPLINPLIYGLKL 293


>tr|B6HEM1|B6HEM1_PENCH Pc20g07890 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc20g07890 PE=4 SV=1
          Length = 219

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
 Frame = +1

Query: 262 SSPLEHVAGNGEILDDII----RHGSHDVTWCFSHER-------AVSGYLSIHTNNK*NE 408
           ++P  H +    I D II    R+GS  V WCF H R       A+  Y  + +NNK N 
Sbjct: 16  AAPAPHTSYRDMIKDAIISLKERNGSRYVLWCFLHRRCLWDHRQAIKKY--VQSNNKINV 73

Query: 409 LSYSKFHSR 435
            S S F S+
Sbjct: 74  TSQSVFDSQ 82


>tr|Q2UIQ1|Q2UIQ1_ASPOR Predicted protein OS=Aspergillus oryzae
           GN=AO090003001527 PE=4 SV=1
          Length = 495

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = +3

Query: 3   ENASLHF---RMFKAEEC-QKFVQWCLPHILNVVDG 98
           E  S+HF   R  +A +C Q+F +WCLPH + VV G
Sbjct: 170 EFLSVHFDEERWRQAAQCIQRFKEWCLPHAIGVVAG 205


>tr|B1NTA7|B1NTA7_SCHMD Beta-catenin-like protein 1 OS=Schmidtea
           mediterranea GN=bcat1 PE=2 SV=1
          Length = 954

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -2

Query: 210 SGIHQYISLSIPFVCCNQRTYVICLLVA-FLYECPPCLSHPQHSI-YVGDTTGQTSDTLL 37
           S +   +S+S+P    N   Y+  +L +  ++  PPC+SH  +S+   GD    T++TL 
Sbjct: 762 SNLRNNLSISLPANQANNSGYLNSILNSPIMHNQPPCVSHRHNSVTQCGDQNIATNETLC 821

Query: 36  P 34
           P
Sbjct: 822 P 822


>tr|B0LMF5|B0LMF5_SCHMD Beta-catenin-1 OS=Schmidtea mediterranea
           PE=2 SV=1
          Length = 954

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -2

Query: 210 SGIHQYISLSIPFVCCNQRTYVICLLVA-FLYECPPCLSHPQHSI-YVGDTTGQTSDTLL 37
           S +   +S+S+P    N   Y+  +L +  ++  PPC+SH  +S+   GD    T++TL 
Sbjct: 762 SNLRNNLSISLPANQANNSGYLNSILNSPIMHNQPPCVSHRHNSVTQCGDQNIATNETLC 821

Query: 36  P 34
           P
Sbjct: 822 P 822


>tr|B1WXP5|B1WXP5_CYAA5 Putative uncharacterized protein
           OS=Cyanothece (strain ATCC 51142) GN=cce_3238 PE=4 SV=1
          Length = 273

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = -2

Query: 366 DSTFMRKAPCNIMGSMANDVIQNFTISCNMLQRRGGLPHNTLLTEHAKIITKSGI--HQY 193
           D    R+  C I+      +I + TIS  + Q +  L H T LTE  K   +  +    Y
Sbjct: 107 DVMVFRQIICLILNQPQQPLINHLTISPELTQLQAFLNHQTPLTEIKKQFREKTVLDSNY 166

Query: 192 ISLSIPFVCCNQRTYVICLLVAFLYECPPCL 100
           + LS+   C     Y + +L A  +  P  L
Sbjct: 167 LLLSLYCFCRTPDNYKLSILQASQFNHPVIL 197


>tr|B4MNB1|B4MNB1_DROWI GK17098 OS=Drosophila willistoni GN=GK17098
            PE=4 SV=1
          Length = 3859

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = -2

Query: 261  GLPHNTLLTEHAKIITKSGIHQYISLSIPFVCCNQRTYVICLLVAFLYECPPCLSHPQHS 82
            G  +NTL   H K  T   I  Y  +S+  +C +  TYV    V     C PC  +    
Sbjct: 3781 GSKYNTLTDMHEKFCTCCSIKSYQPISVKMICEDGHTYVQRHEVPSNCGCSPCAENSDSM 3840

Query: 81   IYV 73
            I V
Sbjct: 3841 IDV 3843


>tr|Q2PR01|Q2PR01_FUGRU Odorant receptor OS=Fugu rubripes
           GN=OR6765-1 PE=3 SV=1
          Length = 306

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 39  EECQKFVQWCLPHILNVVDGISKEDIHIGMLLVDISHMFFD 161
           E+ +KF+Q CLPH+ +++       + I  LL D+ HM FD
Sbjct: 226 EDRRKFIQTCLPHVSSLI-------VVIVCLLFDLVHMRFD 259