BP912615 |
Clone id |
YMU001_000020_H10 |
Library |
YMU01 |
Length |
529 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000020_H10. |
Accession |
BP912615 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CACCAATCTTCATCAACTCCTTGCAAGCTTCTTTAAATTGTCACCATCAGTGAAGAAGTG GGGAAACCTTGAAACAGCCATTTCTGCCATCCTTCCAGAATGGAACTTTCGCTCAGTGTC AAAATAAATTACATTGCCATCAAGTCCATCATGCTCTTTCGGTAGGGCTGTAATCACGCA CAGCATGAGACATAGCTGTGTTTTTCCAAATCCTGCAGGACCCACCACTTCTGTTAGTGC ACCAAATGGAATTCCACCAAGAAGAGCAGAATCTATATCCTGTAGATGTGTCCGTAAATG TCCAAAACCTAGTTCGCTTTCCCTCTCTTCCATTACTGTCAGTGCCGAGCGATATGGCGG ACAAGTAAACAGACTAATCTGAGCTATGGCCTCTCTTATCAACGACAATGGCAAATCCAA CAGCTCCATCAACTCCAATTCTGGTTTACATAGAACGTCCTTGGCGGTAAGAACTCCTCG TGCATGGAGGACATGAAAGAGAGGAGCATCCAGCTGCATACCACTAAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SK02 |
Definition |
sp|Q9SK02|RA51B_ARATH DNA repair protein RAD51 homolog 2 OS=Arabidopsis thaliana |
Align length |
157 |
Score (bit) |
125.0 |
E-value |
1.0e-28 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q60F40 |
Definition |
tr|Q60F40|Q60F40_ORYSJ Os05g0121700 protein OS=Oryza sativa subsp. japonica |
Align length |
169 |
Score (bit) |
135.0 |
E-value |
1.0e-30 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912615|Adiantum capillus-veneris mRNA, clone: YMU001_000020_H10. (529 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q60F40|Q60F40_ORYSJ Os05g0121700 protein OS=Oryza sativa subs... 135 1e-30 tr|B8AXC4|B8AXC4_ORYSI Putative uncharacterized protein OS=Oryza... 135 1e-30 tr|B4FF44|B4FF44_MAIZE Putative uncharacterized protein OS=Zea m... 135 1e-30 tr|A7NZB8|A7NZB8_VITVI Chromosome chr6 scaffold_3, whole genome ... 119 1e-25 tr|A5AWA4|A5AWA4_VITVI Putative uncharacterized protein OS=Vitis... 118 2e-25 tr|Q2VTQ5|Q2VTQ5_ARATH RAD51B OS=Arabidopsis thaliana PE=2 SV=1 114 3e-24 tr|Q6FHX8|Q6FHX8_HUMAN RAD51L1 protein (RAD51-like 1 (S. cerevis... 104 2e-21 tr|Q7ZTX4|Q7ZTX4_DANRE Zgc:56581 OS=Danio rerio GN=zgc:56581 PE=... 102 1e-20 tr|A4S2Y8|A4S2Y8_OSTLU Predicted protein OS=Ostreococcus lucimar... 102 1e-20 tr|A3AZF6|A3AZF6_ORYSJ Putative uncharacterized protein OS=Oryza... 98 3e-19 tr|Q6Q241|Q6Q241_CHLRE Putative Rad51B protein OS=Chlamydomonas ... 94 3e-18 tr|Q16QE6|Q16QE6_AEDAE RAD51C protein, putative OS=Aedes aegypti... 77 7e-13 tr|A0NCA9|A0NCA9_ANOGA AGAP003791-PA OS=Anopheles gambiae GN=AGA... 75 2e-12 tr|Q6PEA6|Q6PEA6_MOUSE Rad51l1 protein OS=Mus musculus GN=Rad51l... 73 1e-11 tr|B4NHG9|B4NHG9_DROWI GK13653 OS=Drosophila willistoni GN=GK136... 72 2e-11 tr|Q5XJT2|Q5XJT2_DANRE Zgc:101596 OS=Danio rerio GN=rad51c PE=2 ... 71 4e-11 tr|A4I546|A4I546_LEIIN Recombinase Rad51, putative OS=Leishmania... 71 4e-11 tr|Q4Q3T8|Q4Q3T8_LEIMA Recombinase Rad51, putative OS=Leishmania... 70 5e-11 tr|B6UY52|B6UY52_DROYA Spindle D (Fragment) OS=Drosophila yakuba... 70 5e-11 tr|B4PRU1|B4PRU1_DROYA GE23723 OS=Drosophila yakuba GN=GE23723 P... 70 5e-11 tr|B1YC14|B1YC14_THENV DNA repair and recombination protein RadA... 70 7e-11 tr|B7FT85|B7FT85_PHATR Rad51 DNA recombination/repair protein (F... 70 9e-11 tr|Q4RWF9|Q4RWF9_TETNG Chromosome undetermined SCAF14988, whole ... 69 1e-10 tr|Q29AC3|Q29AC3_DROPS GA15983 OS=Drosophila pseudoobscura pseud... 69 1e-10 tr|A1RYY7|A1RYY7_THEPD DNA repair and recombination protein RadA... 69 1e-10 tr|Q386Q5|Q386Q5_9TRYP Recombinase Rad51, putative OS=Trypanosom... 69 2e-10 tr|B3T4B5|B3T4B5_9CREN Putative recA bacterial DNA recombination... 69 2e-10 tr|B6UY69|B6UY69_DROME Spindle D (Fragment) OS=Drosophila melano... 68 3e-10 tr|A4HLW0|A4HLW0_LEIBR Recombinase Rad51, putative OS=Leishmania... 67 4e-10 tr|Q4E2R1|Q4E2R1_TRYCR DNA recombination and repair protein RAD5... 67 6e-10
>tr|Q60F40|Q60F40_ORYSJ Os05g0121700 protein OS=Oryza sativa subsp. japonica GN=OJ1001_G01.12 PE=2 SV=1 Length = 363
Score = 135 bits (341), Expect = 1e-30 Identities = 75/169 (44%), Positives = 98/169 (57%) Frame = -2
Query: 528 LSGMQLDAPLFHVLHARGVLTAKDVLCKPXXXXXXXXXXXXXLIREAIAQISLFTCPPYR 349 +S M+L L H+L AR + TAKDVL P R A+A +S CPPY+ Sbjct: 6 VSEMRLPPHLAHILAARRLTTAKDVLSLPEVELMGVLDAGIHTARAAVAHVSEIACPPYQ 65
Query: 348 SALTVMEERESELGFGHLRTHLQDIDSALLGGIPFGALTEVVGPAGFGKTQLCLMLCVIT 169 +AL ++E + G G L T L+ +D AL GGIP G LTEVVGP+G GKTQ CL L ++ Sbjct: 66 TALALLEAFRAR-GDGRLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLA 124
Query: 168 ALPKEHDGLDGNVIYFDTERKFHSGRMAEMAVSRFPHFFTDGDNLKKLA 22 LP+ + GL+G V+Y DTE KF S RM E+ FP F +K+A Sbjct: 125 TLPECYGGLNGRVLYIDTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMA 173
>tr|B8AXC4|B8AXC4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_18249 PE=4 SV=1 Length = 363
Score = 135 bits (341), Expect = 1e-30 Identities = 75/169 (44%), Positives = 98/169 (57%) Frame = -2
Query: 528 LSGMQLDAPLFHVLHARGVLTAKDVLCKPXXXXXXXXXXXXXLIREAIAQISLFTCPPYR 349 +S M+L L H+L AR + TAKDVL P R A+A +S CPPY+ Sbjct: 6 VSEMRLPPHLAHILAARRLTTAKDVLSLPEVELMGVLDAGIHTARAAVAHVSEIACPPYQ 65
Query: 348 SALTVMEERESELGFGHLRTHLQDIDSALLGGIPFGALTEVVGPAGFGKTQLCLMLCVIT 169 +AL ++E + G G L T L+ +D AL GGIP G LTEVVGP+G GKTQ CL L ++ Sbjct: 66 TALALLEAFRAR-GDGRLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLA 124
Query: 168 ALPKEHDGLDGNVIYFDTERKFHSGRMAEMAVSRFPHFFTDGDNLKKLA 22 LP+ + GL+G V+Y DTE KF S RM E+ FP F +K+A Sbjct: 125 TLPECYGGLNGRVLYIDTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMA 173
>tr|B4FF44|B4FF44_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 363
Score = 135 bits (341), Expect = 1e-30 Identities = 78/169 (46%), Positives = 98/169 (57%) Frame = -2
Query: 528 LSGMQLDAPLFHVLHARGVLTAKDVLCKPXXXXXXXXXXXXXLIREAIAQISLFTCPPYR 349 +S M+L L H+L AR + TAKDVL P R AIA +S CPP + Sbjct: 6 VSEMRLPLYLAHLLAARRLDTAKDVLSLPEVELMAILDAGLPTARAAIAHVSEAACPPCQ 65
Query: 348 SALTVMEERESELGFGHLRTHLQDIDSALLGGIPFGALTEVVGPAGFGKTQLCLMLCVIT 169 +AL+++EER G G L T L +D AL GGIP G LTEVVGP+G GKTQ CL L ++ Sbjct: 66 TALSLLEERVRLGGGGRLATMLCGLDEALGGGIPTGKLTEVVGPSGIGKTQFCLKLALLA 125
Query: 168 ALPKEHDGLDGNVIYFDTERKFHSGRMAEMAVSRFPHFFTDGDNLKKLA 22 ALP+ + GLDG V+Y DTE KF RM E+ FP F +K+A Sbjct: 126 ALPEYYGGLDGRVVYIDTEFKFSPRRMIEIGQKSFPQIFRQEGLAQKMA 174
>tr|A7NZB8|A7NZB8_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024451001 PE=4 SV=1 Length = 326
Score = 119 bits (298), Expect = 1e-25 Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%) Frame = -2
Query: 399 IREAIAQISLFTCPPYRSALTVMEER-ESELGFGHLRTHLQDIDSALLGGIPFGALTEVV 223 + A+A IS PP ++AL++ME+R ++E GHL T L+ +D AL GGIPFG LTE+V Sbjct: 11 VTSAVAHISEIVSPPTQTALSLMEQRVQNEYMAGHLPTRLKGLDEALGGGIPFGVLTELV 70
Query: 222 GPAGFGKTQLCLMLCVITALPKEHDGLDGNVIYFDTERKFHSGRMAEMAVSRFPHFF 52 GP G GKTQ CL L ++ +LP + GLDG VIY D E KF S RM E+ FP F Sbjct: 71 GPPGIGKTQFCLKLSLLASLPASYGGLDGRVIYIDAESKFSSRRMIEIGSKSFPEIF 127
>tr|A5AWA4|A5AWA4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001338 PE=4 SV=1 Length = 453
Score = 118 bits (296), Expect = 2e-25 Identities = 64/147 (43%), Positives = 86/147 (58%), Gaps = 1/147 (0%) Frame = -2
Query: 528 LSGMQLDAPLFHVLHARGVLTAKDVLCKPXXXXXXXXXXXXXLIREAIAQISLFTCPPYR 349 +S M L + ++ AR + TAK+ L + A+A IS PP + Sbjct: 6 ISEMGLPTSIANIFAARNITTAKEALSLTEFELMELLDVGMARVTSAVAHISEIVSPPTQ 65
Query: 348 SALTVMEER-ESELGFGHLRTHLQDIDSALLGGIPFGALTEVVGPAGFGKTQLCLMLCVI 172 +AL++ME+R ++E GHL T L+ +D AL GGIPFG LTE+VGP G GKTQ CL L ++ Sbjct: 66 TALSLMEQRVQNEYMAGHLPTRLKGLDEALGGGIPFGVLTELVGPPGIGKTQFCLKLSLL 125
Query: 171 TALPKEHDGLDGNVIYFDTERKFHSGR 91 +LP + GLDG VIY D E KF S R Sbjct: 126 ASLPASYGGLDGRVIYIDAESKFSSRR 152
>tr|Q2VTQ5|Q2VTQ5_ARATH RAD51B OS=Arabidopsis thaliana PE=2 SV=1 Length = 338
Score = 114 bits (285), Expect = 3e-24 Identities = 59/117 (50%), Positives = 77/117 (65%), Gaps = 1/117 (0%) Frame = -2
Query: 399 IREAIAQISLFTCPPYRSALTVMEER-ESELGFGHLRTHLQDIDSALLGGIPFGALTEVV 223 IR AI+ IS T PP +SA +++E++ E+E GHL THL+ +D L GGIPFG LTE+V Sbjct: 17 IRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDYTLCGGIPFGVLTELV 76
Query: 222 GPAGFGKTQLCLMLCVITALPKEHDGLDGNVIYFDTERKFHSGRMAEMAVSRFPHFF 52 GP G GK+Q C+ L + + P + GLDG VIY D E KF S R+ EM + FP F Sbjct: 77 GPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVF 133
>tr|Q6FHX8|Q6FHX8_HUMAN RAD51L1 protein (RAD51-like 1 (S. cerevisiae), isoform CRA_a) OS=Homo sapiens GN=RAD51L1 PE=2 SV=1 Length = 350
Score = 104 bits (260), Expect = 2e-21 Identities = 55/165 (33%), Positives = 82/165 (49%) Frame = -2
Query: 528 LSGMQLDAPLFHVLHARGVLTAKDVLCKPXXXXXXXXXXXXXLIREAIAQISLFTCPPYR 349 L + L L L +LT +D LC + E + +S P + Sbjct: 6 LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQ 65
Query: 348 SALTVMEERESELGFGHLRTHLQDIDSALLGGIPFGALTEVVGPAGFGKTQLCLMLCVIT 169 +A + +R ++ L T L +D AL GG+ G+LTE+ GP G GKTQ C+M+ ++ Sbjct: 66 TAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILA 125
Query: 168 ALPKEHDGLDGNVIYFDTERKFHSGRMAEMAVSRFPHFFTDGDNL 34 LP GL+G V+Y DTE F + R+ E+A SRFP +F + L Sbjct: 126 TLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKL 170
>tr|Q7ZTX4|Q7ZTX4_DANRE Zgc:56581 OS=Danio rerio GN=zgc:56581 PE=2 SV=1 Length = 373
Score = 102 bits (254), Expect = 1e-20 Identities = 56/114 (49%), Positives = 70/114 (61%) Frame = -2
Query: 363 CPPYRSALTVMEERESELGFGHLRTHLQDIDSALLGGIPFGALTEVVGPAGFGKTQLCLM 184 C P + +R+ EL F T L +D L GG+P GALTEV GP+G GKTQLC+M Sbjct: 60 CAPAVITALDLWKRKEELCFS---TSLPALDRLLHGGLPRGALTEVTGPSGCGKTQLCMM 116
Query: 183 LCVITALPKEHDGLDGNVIYFDTERKFHSGRMAEMAVSRFPHFFTDGDNLKKLA 22 L V+ LPK GLD VIY DTE F + R+ EMA SRFP FF+ + L ++A Sbjct: 117 LSVLATLPKSLGGLDSGVIYIDTESAFSAERLVEMAQSRFPEFFSVKERLLEMA 170
>tr|A4S2Y8|A4S2Y8_OSTLU Predicted protein OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_50387 PE=4 SV=1 Length = 351
Score = 102 bits (254), Expect = 1e-20 Identities = 61/165 (36%), Positives = 84/165 (50%) Frame = -2
Query: 513 LDAPLFHVLHARGVLTAKDVLCKPXXXXXXXXXXXXXLIREAIAQISLFTCPPYRSALTV 334 +D L L +RG TA+D L + R+ I ++ P +AL Sbjct: 14 VDQTLAAKLESRGCRTAEDALYRAPLDVVELADVSMHRARQFIISVAKAVAPTPTTALDA 73
Query: 333 MEERESELGFGHLRTHLQDIDSALLGGIPFGALTEVVGPAGFGKTQLCLMLCVITALPKE 154 + + ++ ++D+D AL GG+ GA+TEVVG AG GKTQLCL C A P Sbjct: 74 LRRSQ------YVPLVIEDVDKALGGGLRVGAVTEVVGAAGAGKTQLCLAACASAAAPAR 127
Query: 153 HDGLDGNVIYFDTERKFHSGRMAEMAVSRFPHFFTDGDNLKKLAR 19 G DG VIY D ERKF R+AE+A +FP F D +++ LAR Sbjct: 128 VGGRDGGVIYVDAERKFSGARLAEIAREKFPGAFEDEESVHALAR 172
>tr|A3AZF6|A3AZF6_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_016178 PE=4 SV=1 Length = 315
Score = 97.8 bits (242), Expect = 3e-19 Identities = 52/108 (48%), Positives = 67/108 (62%) Frame = -2
Query: 345 ALTVMEERESELGFGHLRTHLQDIDSALLGGIPFGALTEVVGPAGFGKTQLCLMLCVITA 166 AL ++E + G G L T L+ +D AL GGIP G LTEVVGP+G GKTQ CL L ++ Sbjct: 29 ALALLEAFRAR-GDGRLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLAT 87
Query: 165 LPKEHDGLDGNVIYFDTERKFHSGRMAEMAVSRFPHFFTDGDNLKKLA 22 LP+ + GL+G V+Y DTE KF S RM E+ FP F +K+A Sbjct: 88 LPECYGGLNGRVLYIDTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMA 135
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