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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912617
Clone id YMU001_000021_A01
Library
Length 468
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACATCCTTGAGTGCCGGGTTCGGCGCCTGTAAATGATAGATTATTACTAAAGGTACCTT
CGTGATGGCACCAGAAGGGTGAGGCACCTGGATAGTGGTGACCTTGCCAGCAGTGACTCA
CTGGGGTGAATCTTCCTCTGAAGATTCTTCTGAAAGCTACTCTGAACTAGGAGTATAGTC
TCATTTACTGTCAGAGCTATCCCCAGAGGCAGAGGACTCTTCCTCCGACCGGACATCCTT
CTCTCTATTCGGAGTACGAACCATCTTGATAAACTGTGCCGAGAACTTCAACTGAGGAAC
TGGAGTAGCAGGGTGAAGGAGCTTTGGAGGCACCCTGGCGATAGGGAGAGGTTGGAGTCA
AGCTGGCGATGGAGGAACGCTTGGCGCTTTTGACTTTGATGAATTTGAGGTTGATTTACG
TTTAGCTTTAAACTAAAGCCAGGTAAGTATAGCTTTCGCTTTCCAGTT
■■Homology search results ■■ -
sp_hit_id Q18K99
Definition sp|Q18K99|RL15E_HALWD 50S ribosomal protein L15e OS=Haloquadratum walsbyi (strain DSM 16790)
Align length 31
Score (bit) 34.7
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912617|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_A01.
         (468 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q18K99|RL15E_HALWD 50S ribosomal protein L15e OS=Haloquadratu...    35   0.22 
sp|Q55982|PDXA_SYNY3 4-hydroxythreonine-4-phosphate dehydrogenas...    30   4.0  
sp|Q9HSL2|RL15E_HALSA 50S ribosomal protein L15e OS=Halobacteriu...    30   4.1  
sp|P60618|RL15E_HALMA 50S ribosomal protein L15e OS=Haloarcula m...    30   4.1  
sp|Q17PR1|JING_AEDAE Zinc finger protein jing homolog OS=Aedes a...    30   6.9  
sp|Q8H0V6|GCN3_ARATH GCN20-type ATP-binding cassette protein GCN...    30   6.9  
sp|P56189|MURA_HELPY UDP-N-acetylglucosamine 1-carboxyvinyltrans...    29   8.9  
sp|Q9R1C8|5HT6R_MOUSE 5-hydroxytryptamine receptor 6 OS=Mus musc...    29   8.9  
sp|Q6P861|PP4C_XENTR Serine/threonine-protein phosphatase 4 cata...    29   9.1  
sp|Q6IP91|PP4C_XENLA Serine/threonine-protein phosphatase 4 cata...    29   9.1  
sp|O76932|PP4C_DROME Serine/threonine-protein phosphatase 4 cata...    29   9.1  
sp|Q0VD83|AB48R_HUMAN Apolipoprotein B-100 receptor OS=Homo sapi...    29   9.1  

>sp|Q18K99|RL15E_HALWD 50S ribosomal protein L15e OS=Haloquadratum
           walsbyi (strain DSM 16790) GN=rpl15e PE=3 SV=1
          Length = 196

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 295 RNWSSRVKELWRHPGDRERLESSWRWRNAWR 387
           R++ S +KE W+ PGD +  E  W+ +  WR
Sbjct: 3   RSFYSHIKEAWKQPGDGKLAELQWQRKQEWR 33


>sp|Q55982|PDXA_SYNY3 4-hydroxythreonine-4-phosphate dehydrogenase
           OS=Synechocystis sp. (strain PCC 6803) GN=pdxA PE=3 SV=1
          Length = 349

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
 Frame = -3

Query: 157 AFRRIFRGRFTPV------SHCWQ--GHHYPGASPFWCHHEGTFSNNLSFTGAEPGT 11
           A  R   G F  +         WQ  GH+YPG +    H  G  S  ++F G  P T
Sbjct: 103 AITRTLAGEFDAIVTAPIAKSAWQAAGHNYPGQTEVLAHRAGVESFAMAFVGRSPFT 159


>sp|Q9HSL2|RL15E_HALSA 50S ribosomal protein L15e OS=Halobacterium
           salinarium GN=rpl15e PE=3 SV=1
          Length = 196

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 295 RNWSSRVKELWRHPGDRERLESSWRWRNAWR 387
           R++ S +KE W  P D +  E  W+ +  WR
Sbjct: 3   RSFYSHIKEAWEDPDDGKLAELQWQRKQDWR 33


>sp|P60618|RL15E_HALMA 50S ribosomal protein L15e OS=Haloarcula
           marismortui GN=rpl15e PE=1 SV=3
          Length = 196

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 295 RNWSSRVKELWRHPGDRERLESSWRWRNAWR 387
           R+  S +++ W++PGD +  E  W+ +  WR
Sbjct: 3   RSAYSYIRDAWKNPGDGQLAELQWQRQQEWR 33


>sp|Q17PR1|JING_AEDAE Zinc finger protein jing homolog OS=Aedes
            aegypti GN=AAEL000263 PE=3 SV=1
          Length = 1605

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 345  PIARVPPKLLHPATPVPQLKFSAQFIKMVRTPNREKD 235
            P+   PPKL+ P+ PVP+L  SA       +    KD
Sbjct: 891  PVISNPPKLVPPSAPVPKLVLSASVATKATSTTPIKD 927


>sp|Q8H0V6|GCN3_ARATH GCN20-type ATP-binding cassette protein GCN3
           OS=Arabidopsis thaliana GN=GCN3 PE=2 SV=1
          Length = 715

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 199 IPRGRGLFLRPDILLSIRSTNHLD---KLCRELQLRNW 303
           I   R LF+ PD+LL    TNHLD    L  E  L  W
Sbjct: 348 IALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLTKW 385


>sp|P56189|MURA_HELPY UDP-N-acetylglucosamine
           1-carboxyvinyltransferase OS=Helicobacter pylori GN=murA
           PE=3 SV=1
          Length = 422

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 455 KLYLPGFSLKLNVNQPQIHQSQKRQAF 375
           KL   GFSL +  N  +IH ++KRQAF
Sbjct: 269 KLIEIGFSLDIQENSIEIHPAKKRQAF 295


>sp|Q9R1C8|5HT6R_MOUSE 5-hydroxytryptamine receptor 6 OS=Mus
           musculus GN=Htr6 PE=2 SV=1
          Length = 440

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 178 LYS*FRVAFRRIFRGRFTPVSHCWQGHHYPGASP-FWCHHEG 56
           +Y  F   F+R   GRF P  HC   H    ASP  W  H G
Sbjct: 321 IYPLFMRDFKRAL-GRFVPCVHCPPEHRASPASPSMWTSHSG 361


>sp|Q6P861|PP4C_XENTR Serine/threonine-protein phosphatase 4
           catalytic subunit OS=Xenopus tropicalis GN=ppp4c PE=2
           SV=1
          Length = 307

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 202 PRGRGLFLRPDILLSIRSTNHLDKLCRELQL 294
           PRG G     D++    + N++D +CR  QL
Sbjct: 210 PRGAGYLFGSDVVAQFNAANNIDMICRAHQL 240


>sp|Q6IP91|PP4C_XENLA Serine/threonine-protein phosphatase 4
           catalytic subunit OS=Xenopus laevis GN=ppp4c PE=2 SV=1
          Length = 307

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 202 PRGRGLFLRPDILLSIRSTNHLDKLCRELQL 294
           PRG G     D++    + N++D +CR  QL
Sbjct: 210 PRGAGYLFGSDVVAQFNAANNIDMICRAHQL 240
tr_hit_id A6GIY2
Definition tr|A6GIY2|A6GIY2_9DELT Putative uncharacterized protein OS=Plesiocystis pacifica SIR-1
Align length 51
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912617|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_A01.
         (468 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6GIY2|A6GIY2_9DELT Putative uncharacterized protein OS=Plesi...    34   4.2  
tr|A3IEG0|A3IEG0_9BACI Putative uncharacterized protein OS=Bacil...    34   4.2  
tr|A9HJV5|A9HJV5_GLUDA Putative ABC transporter ATP-binding prot...    33   5.5  
tr|B7QHS1|B7QHS1_IXOSC Ser/Thr protein phosphatase, putative OS=...    33   5.5  
tr|B5ZKS5|B5ZKS5_GLUDA ABC transporter related OS=Gluconacetobac...    33   7.1  
tr|B6LUT0|B6LUT0_BRAFL Putative uncharacterized protein (Fragmen...    33   7.2  

>tr|A6GIY2|A6GIY2_9DELT Putative uncharacterized protein
           OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_17890 PE=4 SV=1
          Length = 522

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +1

Query: 232 DILLSIRSTNHLDKLCRELQLRNWSSRVKELWRHPGDRERLESSWRWRNAW 384
           D +L  R  +    L   LQLR+ +  +  L R  G+RER    WRW  AW
Sbjct: 320 DEVLDPRDLSGAQSLVETLQLRDAALELATLHRRAGERERAARLWRW--AW 368


>tr|A3IEG0|A3IEG0_9BACI Putative uncharacterized protein OS=Bacillus
           sp. B14905 GN=BB14905_11862 PE=4 SV=1
          Length = 307

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = -2

Query: 203 GIALTVNETILLVQSSFQKNLQRKIHPSESLLARSPLSRCLT 78
           G+ +T N T+L+V    +K+ Q  IH   SLLA + +S CLT
Sbjct: 43  GLTITAN-TMLMVMPLLEKSGQEPIHAVSSLLANADVSLCLT 83


>tr|A9HJV5|A9HJV5_GLUDA Putative ABC transporter ATP-binding protein
           OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 /
           DSM 5601 / PAl5) GN=GDI2015 PE=3 SV=1
          Length = 625

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = +1

Query: 217 LFLRPDILLSIRSTNHLDKLCRELQLRNWSSR 312
           LFL PD+LL    TNHLD L   + L NW SR
Sbjct: 163 LFLNPDLLLLDEPTNHLD-LDATIWLENWLSR 193


>tr|B7QHS1|B7QHS1_IXOSC Ser/Thr protein phosphatase, putative
           OS=Ixodes scapularis GN=IscW_ISCW015013 PE=4 SV=1
          Length = 311

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 202 PRGRGLFLRPDILLSIRSTNHLDKLCRELQL 294
           PRG G     D++    +TNH+D +CR  QL
Sbjct: 214 PRGAGYLFGSDVVSQFNTTNHIDMICRAHQL 244


>tr|B5ZKS5|B5ZKS5_GLUDA ABC transporter related OS=Gluconacetobacter
           diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
           GN=Gdia_0238 PE=4 SV=1
          Length = 625

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = +1

Query: 217 LFLRPDILLSIRSTNHLDKLCRELQLRNWSSR 312
           LFL PD+LL    TNHLD L   + L NW SR
Sbjct: 163 LFLNPDLLLLDEPTNHLD-LEATIWLENWLSR 193


>tr|B6LUT0|B6LUT0_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_213302 PE=4 SV=1
          Length = 355

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 133 RFTPVSHCWQGHHYPGASPFWCHHEGTFSNNL 38
           RFT    C  G+H  GAS  WC  +GT+S+N+
Sbjct: 81  RFT----CEVGYHLVGASRIWCQADGTWSDNV 108