BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912618|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_A02.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54BQ5|NSF1C_DICDI NSFL1 cofactor p47 homolog OS=Dictyosteliu...    32   1.5  
sp|Q8VE85|SLMO1_MOUSE Protein slowmo homolog 1 OS=Mus musculus G...    32   2.5  
sp|Q9H611|PIF1_HUMAN ATP-dependent DNA helicase PIF1 OS=Homo sap...    31   3.3  
sp|O08785|CLOCK_MOUSE Circadian locomoter output cycles protein ...    31   4.3  
sp|P10092|CALCB_HUMAN Calcitonin gene-related peptide 2 OS=Homo ...    31   4.3  
sp|Q99JY1|TIRAP_MOUSE Toll/interleukin-1 receptor domain-contain...    30   5.6  
sp|Q502B3|B3GL2_DANRE UDP-GalNAc:beta-1,3-N-acetylgalactosaminyl...    30   7.3  

>sp|Q54BQ5|NSF1C_DICDI NSFL1 cofactor p47 homolog OS=Dictyostelium
           discoideum GN=nsfl1c PE=3 SV=1
          Length = 415

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 24/69 (34%), Positives = 34/69 (49%)
 Frame = +2

Query: 194 LNVTSDNPGKQLGVSPSFDKNKPAYPGFPQGTCY*IPQAT*SVDNIHQNVHNRRRCSTKN 373
           L+VT  N   Q  V P+    KP Y  F  G       +T + +N + N +N  R +T +
Sbjct: 266 LSVTLINNHNQDYVEPA----KPKYVAFSGGGQTLGSSSTSTNNNNNNNNNNNNRATTTS 321

Query: 374 VTTTSSPKV 400
            TTTS+P V
Sbjct: 322 TTTTSTPNV 330


>sp|Q8VE85|SLMO1_MOUSE Protein slowmo homolog 1 OS=Mus musculus
           GN=Slmo1 PE=2 SV=1
          Length = 172

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 41  RTLETPDNAYLVGSSGLEKTKGGCGRIHQRQLLKLQY 151
           R    P N  +VG   LE++  GCGR+H  +LL  ++
Sbjct: 23  RKYPNPMNPCVVGVDVLERSVDGCGRLHSLRLLSTEW 59


>sp|Q9H611|PIF1_HUMAN ATP-dependent DNA helicase PIF1 OS=Homo
           sapiens GN=PIF1 PE=1 SV=2
          Length = 641

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 291 ATESHKLHRVWIISTRMYTIEDGVALRTSR--QQARQKFHNVMA 416
           AT SHK+ R  I++TR+ T +D VAL   R  Q+   K H   A
Sbjct: 409 ATASHKVGRDGIVATRLCTHQDDVALTNERRLQELPGKVHRFEA 452


>sp|O08785|CLOCK_MOUSE Circadian locomoter output cycles protein
           kaput OS=Mus musculus GN=Clock PE=1 SV=1
          Length = 855

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 327 ISTRMYTIEDGVALRTSRQQARQKFHNVMATSMQNTSSPKQESSSCASPL 476
           IST  + I+      TS QQ++Q   +VM+   Q TS P Q  S+  +PL
Sbjct: 611 ISTGQHMIQQQTLQSTSTQQSQQ---SVMSGHSQQTSLPSQTPSTLTAPL 657


>sp|P10092|CALCB_HUMAN Calcitonin gene-related peptide 2 OS=Homo
           sapiens GN=CALCB PE=1 SV=1
          Length = 127

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 21  SLNPST--KEPSRRQITPIL*DLQDWKKPKVDVDESTKGNSSSCSMRECRTSHC 176
           S +P+T  KE +R  +  ++ D    K  ++  ++ T+G+SS+   R C T+ C
Sbjct: 35  SPDPATLSKEDARLLLAALVQDYVQMKASELKQEQETQGSSSAAQKRACNTATC 88


>sp|Q99JY1|TIRAP_MOUSE Toll/interleukin-1 receptor domain-containing
           adapter protein OS=Mus musculus GN=Tirap PE=2 SV=1
          Length = 241

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = -1

Query: 287 FLEGSQGRQACFYQTKGSLPA------VFQGCQRSHSVALLLT 177
           +LEGSQ    CF Q + + P       + Q   RSH  ALL+T
Sbjct: 126 YLEGSQASLRCFLQLRDAAPGGAIVSELCQALSRSHCRALLIT 168


>sp|Q502B3|B3GL2_DANRE
           UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2
           OS=Danio rerio GN=b3galnt2 PE=2 SV=1
          Length = 491

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 26/87 (29%), Positives = 35/87 (40%)
 Frame = +2

Query: 35  YKRTLETPDNAYLVGSSGLEKTKGGCGRIHQRQLLKLQYERV*DEPLW*GVMPLNVTSDN 214
           YK ++E  D + L+      KT   C       L+K+Q  R+    LW G    N   D 
Sbjct: 333 YKWSVENADFSLLL------KTDDDCFIDVDAVLMKMQRRRLTHTSLWWGNFRQNWAVDR 386

Query: 215 PGKQLGVSPSFDKNKPAYPGFPQGTCY 295
            GK        +   PAYP F  G+ Y
Sbjct: 387 VGKW----QELEYASPAYPAFACGSGY 409

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912618|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_A02.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8PFJ0|A8PFJ0_COPC7 Putative uncharacterized protein OS=Copri...    33   7.0  
tr|A4SHK6|A4SHK6_AERS4 ATP-dependent DNA helicase RecQ OS=Aeromo...    33   9.2  
tr|A4EJT9|A4EJT9_9RHOB 2-octaprenyl-6-methoxyphenyl hydroxylase ...    33   9.2  

>tr|A8PFJ0|A8PFJ0_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_04917 PE=4 SV=1
          Length = 312

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -3

Query: 252 LSNEGLTPSCFPGLSEVTFSGITPHHSGSSYTLSYCSLRSCLWWIRPHPPLVFSSPEDP 76
           +S  G   S  PG++   +SG  P++ G  YT+    + +C     P PP+V   P +P
Sbjct: 205 VSFPGAYQSSHPGITINIYSGSLPNNGGRPYTIPGPRVFTCPAGGNPAPPVVTQPPSNP 263


>tr|A4SHK6|A4SHK6_AERS4 ATP-dependent DNA helicase RecQ OS=Aeromonas
           salmonicida (strain A449) GN=recQ PE=4 SV=1
          Length = 607

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -2

Query: 328 IIHTLCSLWDSVAGSLREARVGRLVF---IKRRAHSQLFSRVVRGHIQWHYSSPQWLVLH 158
           ++  L SL      SLR   V  +     + R    Q F+ + RG I+  Y SP+ L+ H
Sbjct: 69  VVSPLISLMKDQVDSLRANGVAAIYINSALSREEMIQNFAAMRRGEIKLLYVSPERLLQH 128

Query: 157 SLILQLEELPL 125
             + +L ELPL
Sbjct: 129 EFMDRLAELPL 139


>tr|A4EJT9|A4EJT9_9RHOB 2-octaprenyl-6-methoxyphenyl hydroxylase
           OS=Roseobacter sp. CCS2 GN=RCCS2_16184 PE=4 SV=1
          Length = 396

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -2

Query: 307 LWDSVAGSLREARVGRLVFIKRRAH-SQLFSRVVRGHIQWHYSSPQWLVLHSLILQLEEL 131
           LW+ +A      +V R+V I   AH ++ F+      + + ++ P WL+   ++ +L +L
Sbjct: 68  LWNHLAAFATPLQVMRIVDIGTEAHVTRNFNAADISELPFGWNLPNWLLRREMVARLADL 127

Query: 130 PLVD 119
           P VD
Sbjct: 128 PNVD 131