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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912620
Clone id YMU001_000021_A04
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTTGGACAAAACCAGTGATACAGAGTTACAAAGATGGATGATATA
TCAAAGGCCAGTGACGGAGGAGTAAAGGATGACTGTAGAAGAGAGTTGAAGCAAGCACCA
CCATAACCTGCGACAAGGAGGATGAAAACTCCACCAAAGAGTCTCAAATATAAGACTCCG
AATCAACAAGGCCCAGCGGAAGAAACATCCCCACTGCACATCCACTTAACATCAAAACTT
TAGGGCAGAGAGAACCTCAAACCATCCCTGGCAGCATCAACAGAGGTACGACGCTCTTCA
ACCATAACATTCTTCACGCCTTTGATGTTAATCTTCGTCCTCATCTGAGCTTCCATCCTC
ATCACTGTAGTCACTGCCAAAGTCTTCTTCAAGCTCAGGGTTCAAGTCAAGCTGGACAAA
AGGCACCTGAATAACATTAGAGGGAGGTGTAGGAGGAGGAGCATCAGAGAGGGGTGCCAC
AGGCTTTTGGTCTTGTGATCG
■■Homology search results ■■ -
sp_hit_id O60885
Definition sp|O60885|BRD4_HUMAN Bromodomain-containing protein 4 OS=Homo sapiens
Align length 38
Score (bit) 26.6
E-value 0.78
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912620|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_A04.
         (483 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60885|BRD4_HUMAN Bromodomain-containing protein 4 OS=Homo sa...    27   0.78 
sp|P48010|SPN5_SCHPO Septin homolog spn5 OS=Schizosaccharomyces ...    33   0.89 
sp|Q55FS3|APH1_DICDI Gamma-secretase subunit Aph-1 OS=Dictyostel...    32   1.5  
sp|Q9HAZ1|CLK4_HUMAN Dual specificity protein kinase CLK4 OS=Hom...    32   1.5  
sp|P38934|BFR1_YEAST Nuclear segregation protein BFR1 OS=Sacchar...    31   3.4  
sp|Q3UVV9|VWA3A_MOUSE von Willebrand factor A domain-containing ...    30   4.4  
sp|Q9BYV8|CEP41_HUMAN Centrosomal protein of 41 kDa OS=Homo sapi...    30   5.7  
sp|Q66T72|PSIP1_FELCA PC4 and SFRS1-interacting protein OS=Felis...    30   7.5  
sp|Q8NA29|MFSD2_HUMAN Major facilitator superfamily domain-conta...    30   7.5  
sp|Q00718|MDMB_STRMY Acyltransferase mdmB OS=Streptomyces mycaro...    29   9.8  
sp|A3N2H4|FRDD_ACTP2 Fumarate reductase subunit D OS=Actinobacil...    29   9.8  

>sp|O60885|BRD4_HUMAN Bromodomain-containing protein 4 OS=Homo
           sapiens GN=BRD4 PE=1 SV=2
          Length = 1362

 Score = 26.6 bits (57), Expect(2) = 0.78
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 234 EPQTIPGSINRGTTLFNHNILHAFDVNLRPHLSFHPHH 347
           EPQ +PGS+      F   ILH     L PHL   P H
Sbjct: 809 EPQ-LPGSVFDPIGHFTQPILHLPQPELPPHLPQPPEH 845



 Score = 25.4 bits (54), Expect(2) = 0.78
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 100 PP*PATRRMKTPPKSLKYKTPNQQGPAEETSP 195
           PP P  ++ + PP       P Q  PA ++SP
Sbjct: 766 PPPPPQQQQQPPPPPPPPSMPQQAAPAMKSSP 797


>sp|P48010|SPN5_SCHPO Septin homolog spn5 OS=Schizosaccharomyces
           pombe GN=spn5 PE=2 SV=2
          Length = 464

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 14/85 (16%)
 Frame = +3

Query: 111 CDKEDENSTKESQI*DSESTRPSGRNIPTAHPLNIKTLGQREPQ--------------TI 248
           C + D    K+++    E    +G++IPT HP N   +     Q               +
Sbjct: 64  CPQSDTAKDKKTEFKQDEVPNSNGKSIPTFHPCNNIGINDFNHQHYSRVCRNGIDINLIV 123

Query: 249 PGSINRGTTLFNHNILHAFDVNLRP 323
            G  + G T F ++ L + D N RP
Sbjct: 124 VGESSLGKTTFVNSFLQSNDTNFRP 148


>sp|Q55FS3|APH1_DICDI Gamma-secretase subunit Aph-1 OS=Dictyostelium
           discoideum GN=aph1 PE=3 SV=1
          Length = 328

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 192 GCFFRWALLIRSLIFETLWWSFHPPCRRLWWCLLQLS 82
           G FF W +   S++   +WW   PP R  WW ++  S
Sbjct: 38  GSFF-WLV---SILIAAIWWYIIPPMREHWWFIISFS 70


>sp|Q9HAZ1|CLK4_HUMAN Dual specificity protein kinase CLK4 OS=Homo
           sapiens GN=CLK4 PE=1 SV=1
          Length = 481

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +2

Query: 95  KHHHNLRQGG*KLHQRVSNIRLRINKAQRKKHPHCTST*HQN 220
           +H+H   + G ++H   S++R R +  +RK++ HC+S  HQ+
Sbjct: 87  RHYHRDIESGYRIHCSKSSVRSRRSSPKRKRNRHCSS--HQS 126


>sp|P38934|BFR1_YEAST Nuclear segregation protein BFR1
           OS=Saccharomyces cerevisiae GN=BFR1 PE=1 SV=1
          Length = 470

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 133 PPKSLKYKTPNQQGPAEETSPLHIHLTSKL*GRENLKPSLAAS 261
           P KS KYK  NQQ   E   P  I   +K+ G+  L+P+L A+
Sbjct: 347 PSKSKKYKKKNQQKNTENEQPASIF--NKVDGKFTLEPTLIAT 387


>sp|Q3UVV9|VWA3A_MOUSE von Willebrand factor A domain-containing
           protein 3A OS=Mus musculus GN=Vwa3a PE=2 SV=1
          Length = 1148

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 114 RRLWWCLLQLSSTVILYSSVTGL*YIIHLCNSVSLVL 4
           RR+W  + Q    ++L  SVT   YIIH+ +S+ L+L
Sbjct: 474 RRIWGTVCQRRVVILLDVSVTNSMYIIHIQHSLRLLL 510


>sp|Q9BYV8|CEP41_HUMAN Centrosomal protein of 41 kDa OS=Homo sapiens
           GN=TSGA14 PE=1 SV=1
          Length = 373

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 79  RRELKQAPP*PATRRMKTPPKSLK---YKTPNQQGPAEETSPLHIHLTSKL*GRENLKP 246
           +R   + PP PA  + +  P+ LK   Y    +QGPA+  S L+   +S   GRE+  P
Sbjct: 285 KRSSPKGPPLPAENKWRFTPEDLKKIEYYLEEEQGPADHPSRLNQANSS---GRESKVP 340


>sp|Q66T72|PSIP1_FELCA PC4 and SFRS1-interacting protein OS=Felis
           silvestris catus GN=PSIP1 PE=1 SV=1
          Length = 530

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 90  EASTTITCDKEDENSTKESQI*DSESTRPSGRNIPTAHPLNIKTLGQREPQ 242
           +   T T D E+E   +ES     E  R  GRN  TAH  N+   GQ E +
Sbjct: 266 KTGVTSTSDSEEEGDDQES-----EKKRKGGRNFQTAHRRNM-LKGQHEKE 310


>sp|Q8NA29|MFSD2_HUMAN Major facilitator superfamily
           domain-containing protein 2 OS=Homo sapiens GN=MFSD2
           PE=2 SV=1
          Length = 543

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = -3

Query: 211 LSGCAVGMFLPLGLVDSESYI*DSLVEFSSSLSQVMVVLASTLFYSHPLLLRHWPLIYHP 32
           ++GCA+G FL + L+D      D  V F  S  QV    AS + +    + R W  I  P
Sbjct: 58  VTGCALGFFLQIYLLDVAQK--DEEVVFCFSSFQVGPFSASIILF----VGRAWDAITDP 111

Query: 31  SL*LCIT 11
            + LCI+
Sbjct: 112 LVGLCIS 118


>sp|Q00718|MDMB_STRMY Acyltransferase mdmB OS=Streptomyces
           mycarofaciens GN=mdmB PE=3 SV=1
          Length = 387

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -1

Query: 177 WALLIRSLIFET--LWWSF--HPPCRRLWWCLLQLSSTVILYSSVT 52
           W+L      + T  LW+      P RRLWWC   +++ VI    VT
Sbjct: 142 WSLSCEFAFYLTFPLWYRLVRKIPVRRLWWCAAGIAAAVICVPFVT 187
tr_hit_id Q6BWC3
Definition tr|Q6BWC3|Q6BWC3_DEBHA DEHA2B12452p OS=Debaryomyces hansenii
Align length 56
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912620|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_A04.
         (483 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6BWC3|Q6BWC3_DEBHA DEHA2B12452p OS=Debaryomyces hansenii GN=...    35   2.4  
tr|Q6D941|Q6D941_ERWCT Putative membrane protein OS=Erwinia caro...    33   7.0  
tr|B2AE81|B2AE81_PODAN Predicted CDS Pa_4_9650 OS=Podospora anse...    33   7.0  
tr|Q55C08|Q55C08_DICDI Putative uncharacterized protein OS=Dicty...    33   9.1  
tr|O45024|O45024_BRAFL Amphioxus Otx transcription factor OS=Bra...    33   9.1  
tr|B6L4B7|B6L4B7_BRAFL Putative uncharacterized protein OS=Branc...    33   9.1  
tr|B6L3E0|B6L3E0_BRAFL Putative uncharacterized protein OS=Branc...    33   9.1  

>tr|Q6BWC3|Q6BWC3_DEBHA DEHA2B12452p OS=Debaryomyces hansenii
           GN=DEHA2B12452g PE=4 SV=2
          Length = 581

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = +3

Query: 189 IPTAHPLNIKTLGQREPQTIPGSINRGTTLFNHNILHAFDVNLRPHLSFHPHHCSH 356
           +P    L  +   Q   Q IP   N  T+  N N LH   V L+PH   HP    H
Sbjct: 264 LPPPPQLQPRAQSQSHQQLIPPKYNTSTSGANSNPLHMLPVPLQPHPPGHPQRHQH 319


>tr|Q6D941|Q6D941_ERWCT Putative membrane protein OS=Erwinia
           carotovora subsp. atroseptica GN=ECA0778 PE=4 SV=1
          Length = 573

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 21/48 (43%), Positives = 29/48 (60%)
 Frame = +1

Query: 184 ETSPLHIHLTSKL*GRENLKPSLAASTEVRRSSTITFFTPLMLIFVLI 327
           ET PL     +KL   +NLK  +AAS EV   S+ +FF  L++IF+ I
Sbjct: 162 ETEPLMAKGINKLSDNDNLKNIIAASKEVEDDSS-SFFEYLVVIFIAI 208


>tr|B2AE81|B2AE81_PODAN Predicted CDS Pa_4_9650 OS=Podospora
           anserina PE=4 SV=1
          Length = 561

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 81  KRVEASTTITCDKEDENSTKESQI*DSESTRPSGRNIP-TAHPLNIKTLGQREPQTIPGS 257
           K  E+ TT TC      + K SQ+ D+    P G + P TA   NI  L   +P  +PGS
Sbjct: 34  KFFESKTTFTCIGIPSITLKASQVNDNSCDCPDGSDEPGTAACANIDPLSPEQP--LPGS 91

Query: 258 INRGTT 275
           +  GTT
Sbjct: 92  VT-GTT 96


>tr|Q55C08|Q55C08_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0216755 PE=4 SV=1
          Length = 578

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +1

Query: 40  ISKASDGGVKDDCRRELKQAPP*PATRRMKTPPKSLKYKTPNQQGPAEETSPLHIHLTSK 219
           +S+ ++G +K+    + K  PP P+   M  PP +L  K+PN+Q    +     + L  K
Sbjct: 1   MSENNEGNIKNG--DDDKMMPPPPSNFLMPPPPSTLIKKSPNKQPQQPQQPQPKVELIYK 58

Query: 220 L*GRENLKPSLAASTEVRRSSTI 288
                   P +    EV +S TI
Sbjct: 59  EPEWSKSNPDIEYKFEVIKSGTI 81


>tr|O45024|O45024_BRAFL Amphioxus Otx transcription factor
           OS=Branchiostoma floridae GN=Otx PE=2 SV=1
          Length = 322

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +1

Query: 76  CRRELKQAPP*PATRRMKTPPKSLKYKTPNQQGP-----AEETSPLHIHLTSKL*GRENL 240
           CR++  QA P P  +    PP S + + P  + P     +  ++P+ + +T    G  N 
Sbjct: 111 CRQQAGQAKPRPKKKSASPPPASTEEQAPTSESPSCSDTSVSSTPVPVAVTI---GNTNA 167

Query: 241 KPSLAAST 264
            P+ A ST
Sbjct: 168 SPTAAVST 175


>tr|B6L4B7|B6L4B7_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_275923 PE=4 SV=1
          Length = 322

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +1

Query: 76  CRRELKQAPP*PATRRMKTPPKSLKYKTPNQQGP-----AEETSPLHIHLTSKL*GRENL 240
           CR++  QA P P  +    PP S + + P  + P     +  ++P+ + +T    G  N 
Sbjct: 111 CRQQAGQAKPRPKKKSASPPPASTEEQAPTSESPSCSDSSVSSTPVPVAVTI---GNTNA 167

Query: 241 KPSLAAST 264
            P+ A ST
Sbjct: 168 SPTAAVST 175


>tr|B6L3E0|B6L3E0_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_113649 PE=4 SV=1
          Length = 322

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +1

Query: 76  CRRELKQAPP*PATRRMKTPPKSLKYKTPNQQGP-----AEETSPLHIHLTSKL*GRENL 240
           CR++  QA P P  +    PP S + + P  + P     +  ++P+ + +T    G  N 
Sbjct: 111 CRQQAGQAKPRPKKKSASPPPASTEEQAPTSESPSCSDSSVSSTPVPVAVTI---GNTNA 167

Query: 241 KPSLAAST 264
            P+ A ST
Sbjct: 168 SPTAAVST 175