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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912634
Clone id YMU001_000021_B06
Library
Length 377
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGAAAAATGTGGAGAGGGGAAACCATGGCGCCACCGTACATAATGCTGACCCCAATGTG
CAAGTAATGGAGGATGTTGATGTACATGGTGCACTCACACATGACTCAATCCAACCGGTG
ACACAGAATTGCGACGCACAGGGTACAACTATGCCATCAACTCAACTAGTGGCAGTTGGG
CAGAGCCTTATAGACATGGCTGAAGCTGCCGCTGATGCTGTGAATGCTCAAATAAGTGAG
GCTGACATAGGCAGGGTGTATGTGGAATTTACCCGTGAGGAAGTTTGCTGTAAAGCAGCA
CATGCATTGCACAGGCGACTTTATGCGAATAGGTCGGTCATTGCCGGATACTTTCCGCTT
AAGATGTACCAGAAGAA
■■Homology search results ■■ -
sp_hit_id Q2R0Q1
Definition sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica
Align length 39
Score (bit) 38.1
E-value 0.014
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912634|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_B06.
         (377 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Or...    38   0.014
sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Cae...    37   0.023
sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Cae...    37   0.023
sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Or...    37   0.040
sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Dro...    33   0.57 
sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus...    32   0.97 
sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Hom...    32   0.97 
sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=...    32   1.3  
sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=...    32   1.3  
sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=...    32   1.3  
sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Or...    31   2.2  
sp|P48733|UROM_BOVIN Uromodulin OS=Bos taurus GN=UMOD PE=2 SV=1        30   2.8  
sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1     30   4.8  
sp|Q8BNN1|SPA2L_MOUSE Spermatogenesis-associated protein 2-like ...    30   4.8  
sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2 OS=...    30   4.8  
sp|P10079|FBP1_STRPU Fibropellin-1 OS=Strongylocentrotus purpura...    30   4.8  
sp|A7SDW5|EIF3L_NEMVE Eukaryotic translation initiation factor 3...    30   4.8  
sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Tr...    29   6.3  
sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2...    29   6.3  
sp|O35516|NOTC2_MOUSE Neurogenic locus notch homolog protein 2 O...    29   6.3  
sp|P82230|CYO1_VIOOD Cycloviolacin-O1 OS=Viola odorata PE=1 SV=2       29   6.3  
sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharo...    29   6.3  
sp|P83937|VHR1_VIOHE Root cyclotide 1 OS=Viola hederacea PE=1 SV=2     29   8.3  
sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus GN=SSPO PE=2 SV=2       29   8.3  
sp|Q8IUW3|SPA2L_HUMAN Spermatogenesis-associated protein 2-like ...    29   8.3  
sp|Q0IIA6|SPA2L_BOVIN Spermatogenesis-associated protein 2-like ...    29   8.3  
sp|Q04721|NOTC2_HUMAN Neurogenic locus notch homolog protein 2 O...    29   8.3  
sp|P84647|HYFLA_HYBFL Cyclotide Hyfl-A OS=Hybanthus floribundus ...    29   8.3  
sp|O13444|ATG15_CLAFU Putative lipase ATG15 OS=Cladosporium fulv...    29   8.3  

>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza
           sativa subsp. japonica GN=U2AF65A PE=2 SV=2
          Length = 574

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 241 ADIGRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFP 357
           A +GRV++EF   E   KA + +H R +AN  V+A ++P
Sbjct: 525 AGVGRVFLEFADVESSTKAKNGMHGRKFANNQVVAVFYP 563


>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit
           OS=Caenorhabditis elegans GN=uaf-1 PE=1 SV=2
          Length = 496

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 247 IGRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMY 369
           +G+V+VEF     C +A  AL  R +ANR+V+  Y+ +  Y
Sbjct: 451 VGKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 491


>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit
           OS=Caenorhabditis briggsae GN=uaf-1 PE=3 SV=2
          Length = 488

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 247 IGRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMY 369
           +G+V+VEF     C +A  AL  R +ANR+V+  Y+ +  Y
Sbjct: 442 VGKVFVEFATTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 482


>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza
           sativa subsp. japonica GN=U2AF35B PE=2 SV=1
          Length = 304

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 247 IGRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMYQK 375
           IG VYV+F  EE    A +AL  R Y+ R +I  Y P+  +++
Sbjct: 109 IGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFRE 151


>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit
           OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1
          Length = 416

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 250 GRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMYQK 375
           G+V+VEF     C KA  AL  R +++R V+  YF    Y +
Sbjct: 372 GKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHR 413


>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus
           musculus GN=U2af2 PE=1 SV=3
          Length = 475

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 250 GRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMYQK 375
           G+++VEFT    C KA   L  R +ANR V+  Y     Y +
Sbjct: 430 GKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR 471


>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo
           sapiens GN=U2AF2 PE=1 SV=4
          Length = 475

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 250 GRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMYQK 375
           G+++VEFT    C KA   L  R +ANR V+  Y     Y +
Sbjct: 430 GKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR 471


>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii
           GN=RBM39 PE=2 SV=1
          Length = 524

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 250 GRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMY 369
           G VYV+         A +ALH R +A + + A Y PL  Y
Sbjct: 466 GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 505


>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus
           GN=Rbm39 PE=1 SV=1
          Length = 530

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 250 GRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMY 369
           G VYV+         A +ALH R +A + + A Y PL  Y
Sbjct: 472 GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 511


>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens
           GN=RBM39 PE=1 SV=2
          Length = 530

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 250 GRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMY 369
           G VYV+         A +ALH R +A + + A Y PL  Y
Sbjct: 472 GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTY 511
tr_hit_id A9PK55
Definition tr|A9PK55|A9PK55_POPJC Putative uncharacterized protein OS=Populus jackii
Align length 40
Score (bit) 47.0
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912634|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_B06.
         (377 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9PK55|A9PK55_POPJC Putative uncharacterized protein OS=Popul...    47   5e-04
tr|O22794|O22794_ARATH Putative splicing factor U2AF large chain...    46   0.001
tr|B8AMU8|B8AMU8_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.001
tr|Q10S21|Q10S21_ORYSJ RNA recognition motif family protein, exp...    45   0.002
tr|Q10S20|Q10S20_ORYSJ RNA recognition motif family protein, exp...    45   0.002
tr|Q0DVB7|Q0DVB7_ORYSJ Os03g0138100 protein OS=Oryza sativa subs...    45   0.002
tr|A3ADX1|A3ADX1_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A7NXF8|A7NXF8_VITVI Chromosome chr5 scaffold_2, whole genome ...    44   0.003
tr|A5AX08|A5AX08_VITVI Putative uncharacterized protein OS=Vitis...    44   0.003
tr|A9SW23|A9SW23_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A8NTW6|A8NTW6_BRUMA U2 auxiliary factor 65 kDa subunit, putat...    42   0.015
tr|B3RQ51|B3RQ51_TRIAD Putative uncharacterized protein OS=Trich...    40   0.075
tr|A7RJT7|A7RJT7_NEMVE Predicted protein OS=Nematostella vectens...    39   0.17 
tr|Q2QKB5|Q2QKB5_WHEAT U2AF small subunit OS=Triticum aestivum P...    38   0.22 
tr|Q00VU9|Q00VU9_OSTTA Putative DNA damage repair protein (ISS) ...    38   0.28 
tr|B8BLH5|B8BLH5_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.28 
tr|A7QPI3|A7QPI3_VITVI Chromosome chr18 scaffold_137, whole geno...    37   0.37 
tr|Q8MXS2|Q8MXS2_CAEEL U2af splicing factor protein 1, isoform d...    37   0.37 
tr|B3GDA3|B3GDA3_9PELO UAF-1 (Fragment) OS=Caenorhabditis brenne...    37   0.37 
tr|A5DUP6|A5DUP6_LODEL Putative uncharacterized protein OS=Lodde...    37   0.37 
tr|B6TRJ7|B6TRJ7_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze...    37   0.49 
tr|B6TCE1|B6TCE1_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze...    37   0.49 
tr|B6T3Q5|B6T3Q5_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze...    37   0.49 
tr|B6SY08|B6SY08_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze...    37   0.49 
tr|B4FAF4|B4FAF4_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.49 
tr|A4RFH0|A4RFH0_MAGGR Putative uncharacterized protein OS=Magna...    37   0.49 
tr|B8AWR4|B8AWR4_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.63 
tr|B7EHH7|B7EHH7_ORYSJ cDNA clone:001-039-A01, full insert seque...    37   0.63 
tr|Q4SAX3|Q4SAX3_TETNG Chromosome 3 SCAF14679, whole genome shot...    36   0.83 
tr|Q9S709|Q9S709_ARATH T22C5.10 (At1g27650/T22C5_2) (Putative U2...    36   0.83 

>tr|A9PK55|A9PK55_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 787

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = +1

Query: 250 GRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMY 369
           G V+VEF R E  C AAH LH RL+ +R+V+  Y PL +Y
Sbjct: 742 GCVFVEFRRTEGACMAAHCLHGRLFDDRAVVVEYVPLDIY 781


>tr|O22794|O22794_ARATH Putative splicing factor U2AF large chain
           OS=Arabidopsis thaliana GN=At2g33440 PE=2 SV=1
          Length = 475

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 20/43 (46%), Positives = 28/43 (65%)
 Frame = +1

Query: 244 DIGRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMYQ 372
           + G +++E+ R E  C AAH+LH RLY NR V A Y   ++YQ
Sbjct: 427 ETGCIFIEYRRPEATCDAAHSLHGRLYDNRIVKAEYVSKELYQ 469


>tr|B8AMU8|B8AMU8_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_09930 PE=4 SV=1
          Length = 1128

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 21/45 (46%), Positives = 28/45 (62%)
 Frame = +1

Query: 235  SEADIGRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMY 369
            S  + G + VEF R+E  C AAH+LH R + +R V AGY P  +Y
Sbjct: 1078 SALEAGCILVEFLRKEAACTAAHSLHGRRFGSRIVSAGYAPHDLY 1122


>tr|Q10S21|Q10S21_ORYSJ RNA recognition motif family protein,
            expressed OS=Oryza sativa subsp. japonica
            GN=LOC_Os03g04520 PE=4 SV=1
          Length = 964

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/45 (46%), Positives = 28/45 (62%)
 Frame = +1

Query: 235  SEADIGRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMY 369
            S  + G + VEF R+E  C AAH+LH R + +R V AGY P  +Y
Sbjct: 914  SALEAGCILVEFLRKEAACIAAHSLHGRRFGSRIVSAGYAPHDLY 958


>tr|Q10S20|Q10S20_ORYSJ RNA recognition motif family protein,
            expressed OS=Oryza sativa subsp. japonica
            GN=LOC_Os03g04520 PE=4 SV=1
          Length = 964

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/45 (46%), Positives = 28/45 (62%)
 Frame = +1

Query: 235  SEADIGRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMY 369
            S  + G + VEF R+E  C AAH+LH R + +R V AGY P  +Y
Sbjct: 914  SALEAGCILVEFLRKEAACIAAHSLHGRRFGSRIVSAGYAPHDLY 958


>tr|Q0DVB7|Q0DVB7_ORYSJ Os03g0138100 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0138100 PE=4 SV=1
          Length = 404

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/45 (46%), Positives = 28/45 (62%)
 Frame = +1

Query: 235 SEADIGRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMY 369
           S  + G + VEF R+E  C AAH+LH R + +R V AGY P  +Y
Sbjct: 354 SALEAGCILVEFLRKEAACIAAHSLHGRRFGSRIVSAGYAPHDLY 398


>tr|A3ADX1|A3ADX1_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_008993 PE=4 SV=1
          Length = 942

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/45 (46%), Positives = 28/45 (62%)
 Frame = +1

Query: 235  SEADIGRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMY 369
            S  + G + VEF R+E  C AAH+LH R + +R V AGY P  +Y
Sbjct: 892  SALEAGCILVEFLRKEAACIAAHSLHGRRFGSRIVSAGYAPHDLY 936


>tr|A7NXF8|A7NXF8_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020315001
           PE=4 SV=1
          Length = 902

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = +1

Query: 244 DIGRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMYQ 372
           ++G V VE+ R E  C AAH LH R + +R V+ GY  L +Y+
Sbjct: 855 EVGCVLVEYGRTEASCMAAHCLHGRYFDDRVVVVGYVALDLYR 897


>tr|A5AX08|A5AX08_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036574 PE=4 SV=1
          Length = 630

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = +1

Query: 244 DIGRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMYQ 372
           ++G V VE+ R E  C AAH LH R + +R V+ GY  L +Y+
Sbjct: 583 EVGCVLVEYGRTEASCMAAHCLHGRYFDDRVVVVGYVALDLYR 625


>tr|A9SW23|A9SW23_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_136079 PE=4 SV=1
          Length = 207

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +1

Query: 250 GRVYVEFTREEVCCKAAHALHRRLYANRSVIAGYFPLKMYQK 375
           G +YVE++R+E  C AAHALH R Y N  V   +   + Y K
Sbjct: 157 GNIYVEYSRDESACHAAHALHGRGYGNAKVSVAFVSPRFYLK 198