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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912640
Clone id YMU001_000021_C01
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GACGGATGCTTCTACAACGTCAGCGACATCTACTGCACAAAATGGGGTTGCGGTAGAATC
TGAGTATGAAAAATTCATGTCAGAAATGGGACGATGACAGGTAAAAGCGACGTGTAGAGT
TCCAATGTTATTTTTCCATTTTGTATTTTTTTCATGCCTTGTGGCTGATTAATTAGGGGG
CTCAATTTATTTGGCAGAGATGTAACTTTGCTATTAGATGATGGCACCCTCACCTACAAG
CCTGGGAGCATTGAGAACGGGATTCCACCATTTCCTTTCTATGTGCTTTACGGGCTGCTG
TATCTTGTTTAGGGTGCTGGCTAGTGTGACCATGTGTACGTAAGATCTGTATGACTTGAT
GGGTGCAACTGAACTTAAATTATATGTGGATAGAAAGGCTTCTTGGCATGTGTGCTTTCA
ACAGAATTCATTCGTCAGATTTGGGACTTAACTTGAACTGATGCTGGTTTATCGTGAATG
GATGGACAGGTTAAGAAGTGATCCCACCTTACTCCTCTTGGTTCAATTCTACC
■■Homology search results ■■ -
sp_hit_id Q2SHM4
Definition sp|Q2SHM4|PHNX_HAHCH Phosphonoacetaldehyde hydrolase OS=Hahella chejuensis (strain KCTC 2396)
Align length 51
Score (bit) 30.8
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912640|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_C01.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2SHM4|PHNX_HAHCH Phosphonoacetaldehyde hydrolase OS=Hahella ...    31   4.3  
sp|A8EV04|SELA_ARCB4 L-seryl-tRNA(Sec) selenium transferase OS=A...    30   9.5  

>sp|Q2SHM4|PHNX_HAHCH Phosphonoacetaldehyde hydrolase OS=Hahella
           chejuensis (strain KCTC 2396) GN=phnX PE=3 SV=1
          Length = 294

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 14/51 (27%), Positives = 31/51 (60%)
 Frame = -3

Query: 390 STYNLSSVAPIKSYRSYVHMVTLASTLNKIQQPVKHIERKWWNPVLNAPRL 238
           +TY+  S+API+++++      +  TL + ++P+   +R+    +LN PR+
Sbjct: 23  TTYDFGSMAPIRAFQNLFAEQEIPITLAEAREPMGTEKREHITRILNMPRV 73


>sp|A8EV04|SELA_ARCB4 L-seryl-tRNA(Sec) selenium transferase
           OS=Arcobacter butzleri (strain RM4018) GN=selA PE=3 SV=1
          Length = 451

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 287 ST*KGNGGIPFSMLPGL*VRVPSSNSKVTSLPNKLSPLINQPQGMKKIQNGKITLELYTS 108
           ST  G G  P   +P + + +   N K    PNKL  ++ +   + +I+N K+ L+  T 
Sbjct: 376 STMVGGGTTPNKKIPTIALTLEHKNYK----PNKLEEILRKNSIISRIENDKVLLDFRTI 431

Query: 107 L 105
           L
Sbjct: 432 L 432
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912640|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_C01.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******