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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912642
Clone id YMU001_000021_C04
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCTCTTCTCTCTTCTCTTGTGTATGCAAGGGCTCCCCTTTGCATATACTGATCTAGAGC
GTCCCTCTTCTCTCTCTGTCTCTCTCTCTCTCTCTTCTGTCTCTGTCATCACACTCTGCC
CAGAGCGCACACAGGCCACTGAAGCGTAACCCTCTGCCTCCCCGTCGCGCCTCCTCTGTT
TCTCCAGCTCTCAGTTCGCAGACATCCACACACACAGTATTAACGCAGCGCATCGCCATG
CAGGGCTCCTTCCGCAACTACGGCAAAGTCGACCCCTACCTCCAATTCCAGTATGAGACC
AAACGCAAGGAGCGCCGTCGCATCTTCACCATCGTCGGCGCTTCCGTCTTCCTCGTCATC
GCCATCATCTGCGTCACCGTCGGAGTTGTTGTCAGCAAGCATAGCTCGTCATCTAATTCC
TCGTCCACCGACGACTCGCCGCAATTCTCATCCGGCTCAATGGCCATTCAAGCGGCCTGC
AATGCCACTCGCTTCCCTGACACATGCGTTGAGTCCTTCAATGATAATCCGGAGTCCCTC
ACCGCAAATCCCCTTC
■■Homology search results ■■ -
sp_hit_id Q43111
Definition sp|Q43111|PME3_PHAVU Pectinesterase-3 OS=Phaseolus vulgaris
Align length 102
Score (bit) 58.5
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912642|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_C04.
         (556 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q43111|PME3_PHAVU Pectinesterase-3 OS=Phaseolus vulgaris GN=M...    59   2e-08
sp|Q43867|PME1_ARATH Pectinesterase-1 OS=Arabidopsis thaliana GN...    47   5e-05
sp|Q50639|PPIB_MYCTU Probable peptidyl-prolyl cis-trans isomeras...    35   0.25 
sp|Q96B97|SH3K1_HUMAN SH3 domain-containing kinase-binding prote...    33   0.72 
sp|Q8R550|SH3K1_MOUSE SH3 domain-containing kinase-binding prote...    32   1.6  
sp|Q925Q9|SH3K1_RAT SH3 domain-containing kinase-binding protein...    32   2.7  
sp|Q9LXQ8|FBL60_ARATH F-box/LRR-repeat protein At3g58940 OS=Arab...    31   4.6  
sp|P83948|PME3_CITSI Pectinesterase-3 OS=Citrus sinensis PE=1 SV=1     30   8.0  
sp|O04886|PME1_CITSI Pectinesterase-1 OS=Citrus sinensis GN=PECS...    30   8.0  

>sp|Q43111|PME3_PHAVU Pectinesterase-3 OS=Phaseolus vulgaris GN=MPE3
           PE=2 SV=1
          Length = 581

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 32/102 (31%), Positives = 49/102 (48%)
 Frame = +1

Query: 247 SFRNYGKVDPYLQFQYETKRKERRRIFTIVGASVFLVIAIICVTVGVVVXXXXXXXXXXX 426
           SF+ YGKV+   Q  YE  +K R+R+  I  +S+ L+  II    GVV+           
Sbjct: 6   SFKGYGKVNELEQQAYE--KKTRKRLIIIAVSSIVLIAVIIAAVAGVVIHNRNSESSPSS 63

Query: 427 XXXXXXXXXXXMAIQAACNATRFPDTCVESFNDNPESLTANP 552
                       +++A C+ TR+P +C  S +  PES T +P
Sbjct: 64  DSVPQTELSPAASLKAVCDTTRYPSSCFSSISSLPESNTTDP 105


>sp|Q43867|PME1_ARATH Pectinesterase-1 OS=Arabidopsis thaliana
           GN=PME1 PE=2 SV=1
          Length = 586

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 30/102 (29%), Positives = 46/102 (45%)
 Frame = +1

Query: 247 SFRNYGKVDPYLQFQYETKRKERRRIFTIVGASVFLVIAIICVTVGVVVXXXXXXXXXXX 426
           SF+ YGKVD         K+K R+R+  +  + V L+  II   V  VV           
Sbjct: 6   SFKGYGKVDEAQDLAL--KKKTRKRLLLLSISVVVLIAVIIAAVVATVVHKNKNESTPSP 63

Query: 427 XXXXXXXXXXXMAIQAACNATRFPDTCVESFNDNPESLTANP 552
                       +++A C+ TRFP++C+ S +  P S T +P
Sbjct: 64  PPELTPST----SLKAICSVTRFPESCISSISKLPSSNTTDP 101


>sp|Q50639|PPIB_MYCTU Probable peptidyl-prolyl cis-trans isomerase B
           OS=Mycobacterium tuberculosis GN=ppiB PE=3 SV=1
          Length = 308

 Score = 35.0 bits (79), Expect = 0.25
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +1

Query: 283 QFQYETKRKERRRIFTIVGASVFLVIAIICVTVGVVV 393
           Q +   K+ +RRRI TIVG S+  V  I+ V V VVV
Sbjct: 34  QLERRAKQAKRRRILTIVGGSLAAVAVIVAVVVTVVV 70


>sp|Q96B97|SH3K1_HUMAN SH3 domain-containing kinase-binding protein
           1 OS=Homo sapiens GN=SH3KBP1 PE=1 SV=2
          Length = 665

 Score = 33.5 bits (75), Expect = 0.72
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +2

Query: 419 PRPPTTRRNSHPAQWPFKRPAMPLASLTHALSPSMIIRSPSPQI 550
           PRPP T   S P   P +RP  P+  LTH        R  SP+I
Sbjct: 403 PRPPKTNSLSRPGALPPRRPERPVGPLTHT-------RGDSPKI 439


>sp|Q8R550|SH3K1_MOUSE SH3 domain-containing kinase-binding protein
           1 OS=Mus musculus GN=Sh3kbp1 PE=1 SV=1
          Length = 709

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 419 PRPPTTRRNSHPAQWPFKRPAMPLASLTHALSPSMIIRSPSPQI 550
           PRPP T   + P   P +RP  P+  LTH        R  SP+I
Sbjct: 447 PRPPKTNSLNRPGALPPRRPERPVGPLTHT-------RGDSPKI 483


>sp|Q925Q9|SH3K1_RAT SH3 domain-containing kinase-binding protein 1
           OS=Rattus norvegicus GN=Sh3kbp1 PE=1 SV=2
          Length = 709

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 419 PRPPTTRRNSHPAQWPFKRPAMPLASLTHALSPS 520
           PRPP T   + P   P +RP  P+  LTH    S
Sbjct: 447 PRPPKTNSLNRPGVLPPRRPERPVGPLTHTRGDS 480


>sp|Q9LXQ8|FBL60_ARATH F-box/LRR-repeat protein At3g58940
           OS=Arabidopsis thaliana GN=At3g58940 PE=2 SV=1
          Length = 618

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -3

Query: 335 TMVKMRRRSLRLVSYWNWR*GSTLP*LR 252
           T+VK++ RS   V++W+W  G++LP L+
Sbjct: 143 TLVKLKLRSEHCVNWWHWDIGASLPNLK 170


>sp|P83948|PME3_CITSI Pectinesterase-3 OS=Citrus sinensis PE=1 SV=1
          Length = 584

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 16/77 (20%), Positives = 36/77 (46%)
 Frame = +1

Query: 307 KERRRIFTIVGASVFLVIAIICVTVGVVVXXXXXXXXXXXXXXXXXXXXXXMAIQAACNA 486
           K+++++F  + A++ +V A+I +  GV                          ++++C++
Sbjct: 25  KKKKKLFLALFATLLVVAAVIGIVAGV---------NSRKNSGDNGNEPHHAILKSSCSS 75

Query: 487 TRFPDTCVESFNDNPES 537
           TR+PD C  +    PE+
Sbjct: 76  TRYPDLCFSAIAAVPEA 92


>sp|O04886|PME1_CITSI Pectinesterase-1 OS=Citrus sinensis
           GN=PECS-1.1 PE=2 SV=1
          Length = 584

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 16/77 (20%), Positives = 36/77 (46%)
 Frame = +1

Query: 307 KERRRIFTIVGASVFLVIAIICVTVGVVVXXXXXXXXXXXXXXXXXXXXXXMAIQAACNA 486
           K+++++F  + A++ +V A+I +  GV                          ++++C++
Sbjct: 25  KKKKKLFLALFATLLVVAAVIGIVAGV---------NSRKNSGDNGNEPHHAILKSSCSS 75

Query: 487 TRFPDTCVESFNDNPES 537
           TR+PD C  +    PE+
Sbjct: 76  TRYPDLCFSAIAAVPEA 92
tr_hit_id A7P6A9
Definition tr|A7P6A9|A7P6A9_VITVI Pectinesterase OS=Vitis vinifera
Align length 102
Score (bit) 49.7
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912642|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_C04.
         (556 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P6A9|A7P6A9_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    50   1e-04
tr|Q8LA06|Q8LA06_ARATH Pectinesterase OS=Arabidopsis thaliana PE...    47   5e-04
tr|Q0WWC7|Q0WWC7_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    47   5e-04
tr|A7QAI2|A7QAI2_VITVI Pectinesterase OS=Vitis vinifera GN=GSVIV...    44   0.006
tr|A5BBV9|A5BBV9_VITVI Putative uncharacterized protein OS=Vitis...    43   0.013
tr|Q9FF78|Q9FF78_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    40   0.085
tr|Q84W31|Q84W31_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    40   0.085
tr|Q9LUL8|Q9LUL8_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    39   0.19 
tr|Q6YSY6|Q6YSY6_ORYSJ Os07g0247000 protein OS=Oryza sativa subs...    38   0.32 
tr|A3BI85|A3BI85_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.32 
tr|A2YJW3|A2YJW3_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.32 
tr|Q9SG77|Q9SG77_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    37   0.55 
tr|A9PB72|A9PB72_POPTR Putative uncharacterized protein OS=Popul...    37   0.94 
tr|Q9M3B0|Q9M3B0_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    36   1.6  
tr|Q0WVR8|Q0WVR8_ARATH Pectinesterase like protein OS=Arabidopsi...    36   1.6  
tr|Q0WPK1|Q0WPK1_ARATH Pectinesterase like protein (Fragment) OS...    36   1.6  
tr|A9TZ89|A9TZ89_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.6  
tr|Q9FEU0|Q9FEU0_9ROSI Pectinesterase OS=Populus tremula x Popul...    35   2.1  
tr|A0ZNJ9|A0ZNJ9_PYRCO Pectinesterase OS=Pyrus communis GN=PcPME...    35   2.1  
tr|A0FHC0|A0FHC0_LYCAU Pectinesterase OS=Lycoris aurea PE=2 SV=1       35   2.1  
tr|A5U5T2|A5U5T2_MYCTA Peptidyl-prolyl cis-trans isomerase OS=My...    35   2.7  
tr|A4KP04|A4KP04_MYCTU Peptidyl-prolyl cis-trans isomerase OS=My...    35   2.7  
tr|A2VKT9|A2VKT9_MYCTU Peptidyl-prolyl cis-trans isomerase OS=My...    35   2.7  
tr|A1QUL4|A1QUL4_MYCTF Peptidyl-prolyl cis-trans isomerase OS=My...    35   2.7  
tr|A0FHB9|A0FHB9_LYCAU Pectinesterase OS=Lycoris aurea PE=2 SV=1       35   3.6  
tr|B4FJ67|B4FJ67_MAIZE Lustrin A OS=Zea mays PE=2 SV=1                 34   4.6  
tr|B8BA42|B8BA42_ORYSI Putative uncharacterized protein OS=Oryza...    34   6.1  
tr|Q1DT83|Q1DT83_COCIM Putative uncharacterized protein OS=Cocci...    34   6.1  
tr|B2GUQ4|B2GUQ4_XENTR Sh3kbp1 protein (Fragment) OS=Xenopus tro...    33   7.9  
tr|B6TSG0|B6TSG0_MAIZE Lustrin A OS=Zea mays PE=2 SV=1                 33   7.9  

>tr|A7P6A9|A7P6A9_VITVI Pectinesterase OS=Vitis vinifera
           GN=GSVIVT00033996001 PE=3 SV=1
          Length = 578

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 31/102 (30%), Positives = 49/102 (48%)
 Frame = +1

Query: 247 SFRNYGKVDPYLQFQYETKRKERRRIFTIVGASVFLVIAIICVTVGVVVXXXXXXXXXXX 426
           SF+ YGKVD   +  +  KRK R+R+  ++ +SV LV  II    G ++           
Sbjct: 6   SFKGYGKVDELEERAF--KRKTRKRLIILIISSVVLVAVIIGAVAGTLIHKSKSESNSVP 63

Query: 427 XXXXXXXXXXXMAIQAACNATRFPDTCVESFNDNPESLTANP 552
                       +I+A C+ T++PD+CV S +    S T +P
Sbjct: 64  ASPVSPAT----SIKAVCSVTQYPDSCVSSISSLDTSNTTDP 101


>tr|Q8LA06|Q8LA06_ARATH Pectinesterase OS=Arabidopsis thaliana PE=2
           SV=1
          Length = 586

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 30/102 (29%), Positives = 46/102 (45%)
 Frame = +1

Query: 247 SFRNYGKVDPYLQFQYETKRKERRRIFTIVGASVFLVIAIICVTVGVVVXXXXXXXXXXX 426
           SF+ YGKVD         K+K R+R+  +  + V L+  II   V  VV           
Sbjct: 6   SFKGYGKVDEAQDLAL--KKKTRKRLLLLSISVVVLIAVIIAAVVATVVHKNKNESTPSP 63

Query: 427 XXXXXXXXXXXMAIQAACNATRFPDTCVESFNDNPESLTANP 552
                       +++A C+ TRFP++C+ S +  P S T +P
Sbjct: 64  PPELTPST----SLKAICSVTRFPESCISSISKLPSSNTTDP 101


>tr|Q0WWC7|Q0WWC7_ARATH Pectinesterase OS=Arabidopsis thaliana
           GN=At1g53840 PE=2 SV=1
          Length = 586

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 30/102 (29%), Positives = 46/102 (45%)
 Frame = +1

Query: 247 SFRNYGKVDPYLQFQYETKRKERRRIFTIVGASVFLVIAIICVTVGVVVXXXXXXXXXXX 426
           SF+ YGKVD         K+K R+R+  +  + V L+  II   V  VV           
Sbjct: 6   SFKGYGKVDEAQDLAL--KKKTRKRLLLLSISVVVLIAVIIAAVVATVVHKNKNESTPSP 63

Query: 427 XXXXXXXXXXXMAIQAACNATRFPDTCVESFNDNPESLTANP 552
                       +++A C+ TRFP++C+ S +  P S T +P
Sbjct: 64  PPELTPST----SLKAICSVTRFPESCISSISKLPSSNTTDP 101


>tr|A7QAI2|A7QAI2_VITVI Pectinesterase OS=Vitis vinifera
           GN=GSVIVT00033939001 PE=3 SV=1
          Length = 561

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 30/102 (29%), Positives = 43/102 (42%)
 Frame = +1

Query: 247 SFRNYGKVDPYLQFQYETKRKERRRIFTIVGASVFLVIAIICVTVGVVVXXXXXXXXXXX 426
           SF+ YGKV+   Q +   +RK RRRI  I  +S+ LV  I+   VG              
Sbjct: 3   SFKAYGKVNEAEQERLLARRKTRRRITIISLSSIILVAVIVAAVVGTTT--------NSG 54

Query: 427 XXXXXXXXXXXMAIQAACNATRFPDTCVESFNDNPESLTANP 552
                       +I+A C+ T +PD+C  S     +S    P
Sbjct: 55  GKSKNAGNSVSTSIKAVCDVTLYPDSCYNSLAPMVKSSQLKP 96


>tr|A5BBV9|A5BBV9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008223 PE=4 SV=1
          Length = 559

 Score = 42.7 bits (99), Expect = 0.013
 Identities = 30/102 (29%), Positives = 42/102 (41%)
 Frame = +1

Query: 247 SFRNYGKVDPYLQFQYETKRKERRRIFTIVGASVFLVIAIICVTVGVVVXXXXXXXXXXX 426
           SF+ YGKV+   Q +    RK RRRI  I  +S+ LV  I+   VG              
Sbjct: 3   SFKAYGKVNEAEQERLLAXRKTRRRITIISLSSIILVAVIVAAVVGTTT--------NSG 54

Query: 427 XXXXXXXXXXXMAIQAACNATRFPDTCVESFNDNPESLTANP 552
                       +I+A C+ T +PD+C  S     +S    P
Sbjct: 55  GKSKNAGNSVSTSIKAVCDVTLYPDSCYNSLAPMVKSSQLKP 96


>tr|Q9FF78|Q9FF78_ARATH Pectinesterase OS=Arabidopsis thaliana
           GN=At5g04960 PE=2 SV=1
          Length = 564

 Score = 40.0 bits (92), Expect = 0.085
 Identities = 25/99 (25%), Positives = 45/99 (45%)
 Frame = +1

Query: 256 NYGKVDPYLQFQYETKRKERRRIFTIVGASVFLVIAIICVTVGVVVXXXXXXXXXXXXXX 435
           +YG++D + Q + E  RK ++RI  I  +S+ LV    C+ VG VV              
Sbjct: 3   SYGRLDEHEQAKLEASRKTKKRIAIIAISSIVLV----CIVVGAVVGTTARDNSKKPPTE 58

Query: 436 XXXXXXXXMAIQAACNATRFPDTCVESFNDNPESLTANP 552
                   ++++A C+ T   + C E+    P +  ++P
Sbjct: 59  NNGEPIS-VSVKALCDVTLHKEKCFETLGSAPNASRSSP 96


>tr|Q84W31|Q84W31_ARATH Pectinesterase OS=Arabidopsis thaliana
           GN=At5g04960 PE=2 SV=1
          Length = 564

 Score = 40.0 bits (92), Expect = 0.085
 Identities = 25/99 (25%), Positives = 45/99 (45%)
 Frame = +1

Query: 256 NYGKVDPYLQFQYETKRKERRRIFTIVGASVFLVIAIICVTVGVVVXXXXXXXXXXXXXX 435
           +YG++D + Q + E  RK ++RI  I  +S+ LV    C+ VG VV              
Sbjct: 3   SYGRLDEHEQAKLEASRKTKKRIAIIAISSIVLV----CIVVGAVVGTTARDNSKKPPTE 58

Query: 436 XXXXXXXXMAIQAACNATRFPDTCVESFNDNPESLTANP 552
                   ++++A C+ T   + C E+    P +  ++P
Sbjct: 59  NNGEPIS-VSVKALCDVTLHKEKCFETLGSAPNASRSSP 96


>tr|Q9LUL8|Q9LUL8_ARATH Pectinesterase OS=Arabidopsis thaliana
           GN=At3g14300 PE=3 SV=1
          Length = 968

 Score = 38.9 bits (89), Expect = 0.19
 Identities = 26/100 (26%), Positives = 43/100 (43%)
 Frame = +1

Query: 253 RNYGKVDPYLQFQYETKRKERRRIFTIVGASVFLVIAIICVTVGVVVXXXXXXXXXXXXX 432
           + YGKVD         KRK R+R++ I G SV +++AII  +   +              
Sbjct: 9   KGYGKVDETQDLAL--KRKTRKRLYQI-GISVAVLVAIIISSTVTIAIHSRKGNSPHPTP 65

Query: 433 XXXXXXXXXMAIQAACNATRFPDTCVESFNDNPESLTANP 552
                     +++  C+ T +P +C  S +  P S T +P
Sbjct: 66  SSVPELTPAASLKTVCSVTNYPVSCFSSISKLPLSNTTDP 105


>tr|Q6YSY6|Q6YSY6_ORYSJ Os07g0247000 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0003K21.33 PE=2 SV=1
          Length = 361

 Score = 38.1 bits (87), Expect = 0.32
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 466 IQAACNATRFPDTCVESFNDNPESLTAN 549
           +Q ACN T FP  C+++   NPES TAN
Sbjct: 29  LQDACNRTLFPKVCIQALTTNPESRTAN 56


>tr|A3BI85|A3BI85_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022757 PE=4 SV=1
          Length = 362

 Score = 38.1 bits (87), Expect = 0.32
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 466 IQAACNATRFPDTCVESFNDNPESLTAN 549
           +Q ACN T FP  C+++   NPES TAN
Sbjct: 29  LQDACNRTLFPKVCIQALTTNPESRTAN 56