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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912647
Clone id YMU001_000021_C09
Library
Length 491
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGCACCATCACTGTTTCTGAAGAAGAGGGTAAATCTCTGAGCTTAGTGGAATGGCAACC
TGTTCCTGCTCCGGATGCGTTTTCAGACTTTATCCCTTCACACTCAGTTGTCCTTTTTGT
TTGATCGTGAAGCGCGTGCATGCTGTTCAGTTTCACTTGTTTTGTACAATGGACATGGCT
TAATTCTTTTGAAGACAGCAGTGATGATATTCGAGTCTCACTCAGAGATTGACAATTGTC
TTTAATGCGAGAGGTCGACTCCAATTGTTTACAATATCAGAGTTGATGATGCTCTACAAA
TGAGTTCAAAATGTTTTGCATTTCACAGGGTCCAGCACTGATGGGTGTACTGTGGATCGT
TGAGTAGTCACCATTATTGTTGATCCAGACACCATTATTGCTGATGTGGACGAGTATCCT
GTGCTGAAGGAATGGAAAGCCTAACATCTATTTTTTGATCAGGAGTCTCGAAGGTTACAT
GTAACATCTCA
■■Homology search results ■■ -
sp_hit_id Q753X4
Definition sp|Q753X4|PMIP_ASHGO Mitochondrial intermediate peptidase OS=Ashbya gossypii
Align length 49
Score (bit) 32.3
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912647|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_C09.
         (491 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q753X4|PMIP_ASHGO Mitochondrial intermediate peptidase OS=Ash...    32   1.2  
sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 OS=Schizos...    31   3.5  
sp|O96615|SER2_GALME Sericin-2 (Fragment) OS=Galleria mellonella...    30   4.5  
sp|A2BVS4|GLMU_PROM5 Bifunctional protein glmU OS=Prochlorococcu...    30   4.5  
sp|Q54KH0|Y7435_DICDI Uncharacterized protein DDB_G0287347 OS=Di...    30   7.8  
sp|Q9US60|KLP3_SCHPO Kinesin-like protein 3 OS=Schizosaccharomyc...    30   7.8  

>sp|Q753X4|PMIP_ASHGO Mitochondrial intermediate peptidase OS=Ashbya
           gossypii GN=OCT1 PE=3 SV=1
          Length = 776

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -3

Query: 342 ISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQSLSETRISSLL 196
           ++  P  ++N LN+ V+H +     +LE  +++K N ++LSET    L+
Sbjct: 354 MAKSPENVKNFLNTLVDHTKPLAAGELEELAKLKRNVENLSETNTLKLM 402


>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15
           OS=Schizosaccharomyces pombe GN=spo15 PE=1 SV=1
          Length = 1957

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 11/42 (26%), Positives = 29/42 (69%)
 Frame = -3

Query: 264 LESTSRIKDNCQSLSETRISSLLSSKELSHVHCTKQVKLNSM 139
           LES S++K +C++L++  ++ + + ++L H H  ++ K++ +
Sbjct: 814 LESESKLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


>sp|O96615|SER2_GALME Sericin-2 (Fragment) OS=Galleria mellonella
           GN=SER2 PE=2 SV=1
          Length = 220

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 29/131 (22%), Positives = 52/131 (39%)
 Frame = -3

Query: 402 SNNGVWINNNGDYSTIHSTPISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQSL 223
           +NN    ++  + S   ST  S+G     N   S   ++     +   S S   +N  S 
Sbjct: 4   TNNSSGSSSTNNSSGSSSTNNSSGSSSTNNASGSSSSNNTSGSSRNNSSGSSSSNNSSSG 63

Query: 222 SETRISSLLSSKELSHVHCTKQVKLNSMHALHDQTKRTTECEGIKSENASGAGTGCHSTK 43
           S    SS  SS   S       +  NS  +   Q   ++    + ++ +S + +  +S  
Sbjct: 64  SSAGNSSGSSSSNSSGSSGIGSLSRNSSSSSSSQAAGSSSSRRVSADGSSSSSSASNSAA 123

Query: 42  LRDLPSSSETV 10
            ++  SSSET+
Sbjct: 124 AQNSASSSETI 134


>sp|A2BVS4|GLMU_PROM5 Bifunctional protein glmU OS=Prochlorococcus
           marinus (strain MIT 9515) GN=glmU PE=3 SV=1
          Length = 447

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
 Frame = -3

Query: 408 HISNNGVWINNN--GDYSTIHSTPISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDN 235
           HI  N    NN   G  + I  T I+   CE   I+NS + +  L     +   S I+ N
Sbjct: 275 HIRGNSKISNNCKIGPNTFIKDTIINEN-CE---IINSTIFNSVLMDFVNIGPYSHIRPN 330

Query: 234 CQSLSETRISSLLSSKELSHVHCTKQVKLNSMHALHDQT--KRTTECEGIKSENASG 70
           C+  S +RI + +   E+ +    K+VK+N +  + D T  K T    G  + N  G
Sbjct: 331 CEISSYSRIGNFV---EIKNSQLDKEVKVNHLSYIGDSTVGKHTNIGAGTITANFDG 384


>sp|Q54KH0|Y7435_DICDI Uncharacterized protein DDB_G0287347
           OS=Dictyostelium discoideum GN=DDB_G0287347 PE=4 SV=1
          Length = 609

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = -3

Query: 408 HISNNGVWINNNGDYSTIHSTPISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQ 229
           +I+NN   INNN + ++I+    +      QNI+N  +   ++          R  +NC 
Sbjct: 210 NITNNNTNINNNNNPNSIYGNENNNNNNNQQNIINEIINKRRI----------RNNNNCS 259

Query: 228 SLSETRISSLLSS 190
            L     SS++++
Sbjct: 260 PLVTCLNSSIITN 272


>sp|Q9US60|KLP3_SCHPO Kinesin-like protein 3 OS=Schizosaccharomyces
           pombe GN=klp3 PE=2 SV=1
          Length = 554

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
 Frame = -3

Query: 393 GVWINNNGDYSTIHSTPISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQSLSET 214
           G  INNN DY+  HS   S    E    L++  E   L   + ++    I+++     E+
Sbjct: 357 GARINNNLDYNNCHSNVWSG---EHSLTLSNLAEKSNLKEAEIIQGNRTIQESNNDRDES 413

Query: 213 RISSL----LSSKELSHVHCTKQVKLNSMHALHDQTKR 112
            ++S+      S  ++ ++   Q++L     +   TK+
Sbjct: 414 TVASIHRHNFDSDSINRLYAEAQLELKQRDGVLSSTKQ 451
tr_hit_id Q95PM8
Definition tr|Q95PM8|Q95PM8_PARLI SKE-T protein OS=Paracentrotus lividus
Align length 126
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912647|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_C09.
         (491 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q95PM8|Q95PM8_PARLI SKE-T protein OS=Paracentrotus lividus GN...    37   0.49 
tr|B2YFM7|B2YFM7_9HIV1 Envelope glycoprotein OS=Human immunodefi...    37   0.64 
tr|Q7SPT5|Q7SPT5_9HIV1 Envelope glycoprotein OS=Human immunodefi...    36   0.84 
tr|Q4QWU2|Q4QWU2_9HIV1 Envelope glycoprotein OS=Human immunodefi...    36   0.84 
tr|A8V8A3|A8V8A3_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    35   2.4  
tr|A2R999|A2R999_ASPNC Putative uncharacterized protein OS=Asper...    35   2.4  
tr|Q9YXF8|Q9YXF8_9HIV1 Gp120 (Fragment) OS=Human immunodeficienc...    34   3.2  
tr|Q70QZ9|Q70QZ9_9HIV1 Gp120 protein (Fragment) OS=Human immunod...    34   3.2  
tr|Q70QV5|Q70QV5_9HIV1 Gp120 protein (Fragment) OS=Human immunod...    34   3.2  
tr|Q07BI2|Q07BI2_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    34   3.2  
tr|Q75029|Q75029_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    34   4.2  
tr|A1XRB1|A1XRB1_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    34   4.2  
tr|Q75019|Q75019_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   5.5  
tr|Q0GF33|Q0GF33_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   5.5  
tr|Q6FRB6|Q6FRB6_CANGA Strain CBS138 chromosome H complete seque...    33   5.5  
tr|A7TJ77|A7TJ77_VANPO DNA polymerase OS=Vanderwaltozyma polyspo...    33   5.5  
tr|Q9WHQ8|Q9WHQ8_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.1  
tr|Q9DV20|Q9DV20_9HIV1 Envelope glycoprotein gp120 (Fragment) OS...    33   7.1  
tr|Q6UYP1|Q6UYP1_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.1  
tr|Q285S4|Q285S4_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   7.1  
tr|Q6UYP0|Q6UYP0_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.3  
tr|Q6UYN9|Q6UYN9_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.3  
tr|Q2I8W8|Q2I8W8_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   9.3  
tr|Q3ATC5|Q3ATC5_CHLCH D-alanyl-D-alanine carboxypeptidease, put...    33   9.3  
tr|A2E2N3|A2E2N3_TRIVA Putative uncharacterized protein OS=Trich...    33   9.3  
tr|Q4WW05|Q4WW05_ASPFU WD domain, G-beta repeat protein OS=Asper...    33   9.3  
tr|B0Y287|B0Y287_ASPFC WD domain, G-beta repeat protein OS=Asper...    33   9.3  

>tr|Q95PM8|Q95PM8_PARLI SKE-T protein OS=Paracentrotus lividus
            GN=ske-T PE=2 SV=1
          Length = 958

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
 Frame = -3

Query: 345  PISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQSLSET---RISSLLSSK---- 187
            P S  P  +QN   S V+HHQ+   ++L S S    NC + S+T     S++L +     
Sbjct: 721  PTSLAPVSVQNSSCSMVQHHQIRDGEELPSPSEAATNCNTDSKTIHYHSSAVLPTDLPPA 780

Query: 186  -------ELSHVHCTKQVKLNSMHALHDQ-------TKRTTECEGIKSENASGAGTGCHS 49
                   ++SH            H L D+       T  +++C      N+S +G G H 
Sbjct: 781  CDPPQQIDISHFGMHTPTACPDTHKLQDRPDMTWLNTPPSSDCSPDSKSNSSDSG-GAHP 839

Query: 48   TKLRDL 31
             K + L
Sbjct: 840  AKRQKL 845


>tr|B2YFM7|B2YFM7_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 875

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = -3

Query: 402 SNNGVWINNNGDYSTIHSTPISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQSL 223
           +N+ +W N+ GDY++         PC ++ I+N + +  Q  Y   ++   R   N   L
Sbjct: 405 NNSSIWDNSTGDYNSTKDNETITLPCRIKQIINMWQKVGQAMYAPPIKGIIRCDSNITGL 464

Query: 222 SETRISSLLSS 190
             TR   + +S
Sbjct: 465 LLTRDGGINNS 475


>tr|Q7SPT5|Q7SPT5_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 863

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 396 NGVWINNNGDYSTIHSTPISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQSLSE 217
           NGVW NN  D  T++ +     PC ++ I+N++    +  Y   +    R   N   L  
Sbjct: 401 NGVWKNNTSDNETVNGSETITIPCRIKQIINTWQGVGRAMYAPPIRGLIRCSSNITGLLL 460

Query: 216 TR 211
           TR
Sbjct: 461 TR 462


>tr|Q4QWU2|Q4QWU2_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 859

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 396 NGVWINNNGDYSTIHSTPISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQSLSE 217
           NGVW NN  D  T++ +     PC ++ I+N++    +  Y   +    R   N   L  
Sbjct: 397 NGVWKNNTSDNETVNGSETITIPCRIKQIINTWQGVGRAMYAPPIRGLIRCSSNITGLLL 456

Query: 216 TR 211
           TR
Sbjct: 457 TR 458


>tr|A8V8A3|A8V8A3_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 356

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -3

Query: 399 NNGVWINNNGDYSTIHSTPISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQSLS 220
           NNG W  N  D ST     I+  PC ++ I+N +    Q  Y   ++   R   N   L 
Sbjct: 277 NNGTWTRNRTDNSTESGESITL-PCRIKQIINMWQRAGQAMYAPPIQGVIRCDSNITGLL 335

Query: 219 ETR 211
            TR
Sbjct: 336 LTR 338


>tr|A2R999|A2R999_ASPNC Putative uncharacterized protein
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An17g00620 PE=4 SV=1
          Length = 433

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = -3

Query: 198 LSSKELSHVHCTKQVKLNSMHALHDQTKRTTECEGIKSENASGAGTGCHSTKLRDLPSSS 19
           L +K  S V  T+Q  + +M  LH QT +  +C+ +K    SG  T  HS    D   SS
Sbjct: 124 LKNKYDSGVALTQQPSMQAMRVLHSQTSQNLKCDSLK----SGRATSSHSALPSDGTQSS 179


>tr|Q9YXF8|Q9YXF8_9HIV1 Gp120 (Fragment) OS=Human immunodeficiency
           virus 1 GN=env PE=4 SV=1
          Length = 224

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = -3

Query: 399 NNGVWINNNGDYSTIHSTPISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQSLS 220
           +NG WIN  G Y   +ST I+  PC ++ I+N + E  +  Y   +E   +   N   L 
Sbjct: 123 SNGTWINGTG-YHGSNSTNITL-PCRIKQIINMWQEVGKAMYAPPIEGLIKCSSNITGLL 180

Query: 219 ETR 211
            TR
Sbjct: 181 LTR 183


>tr|Q70QZ9|Q70QZ9_9HIV1 Gp120 protein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 171

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -3

Query: 396 NGVWINNNGDYSTIHSTPISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQSLSE 217
           NG W NN  +++  + T I   PC ++ I+N +    Q  Y   +  T R + N   L  
Sbjct: 109 NGTWNNNRTEFNNTNGTIIL--PCRIKQIINMWQRVGQAMYAPPIPGTIRCESNITGLLL 166

Query: 216 TR 211
           TR
Sbjct: 167 TR 168


>tr|Q70QV5|Q70QV5_9HIV1 Gp120 protein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 218

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -3

Query: 396 NGVWINNNGDYSTIHSTPISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQSLSE 217
           NG W+N N  +    S+     PC ++ I+N +    Q  Y   ++   R + N   L  
Sbjct: 133 NGSWVNENATWGNDSSSDNMTIPCRIKQIINMWQRTGQAMYAPPIKGVIRCESNITGLLL 192

Query: 216 TR 211
           TR
Sbjct: 193 TR 194


>tr|Q07BI2|Q07BI2_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 224

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = -3

Query: 399 NNGVWINNNGDYSTIHSTPISAGPCEMQNILNSFVEHHQL*YCKQLESTSRIKDNCQSLS 220
           +NG WIN  G Y   +ST I+  PC ++ I+N + E  +  Y   +E   +   N   L 
Sbjct: 123 SNGTWINGTG-YHGSNSTNITL-PCRIKQIINMWQEVGKAMYAPPIEGLIKCSSNITGLL 180

Query: 219 ETR 211
            TR
Sbjct: 181 LTR 183