NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912651
Clone id YMU001_000021_D01
Library
Length 531
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACAACCACAAACCTATCTTTCTTCAAGAAATCAGGGGGCATTTGATTCTCTTCAAGTCCC
TTTATGATCTTTCTCCAACAAGCTTCAAACCTATTTATGTGCACATTGATGTCTTCATGT
TCTCCTTGTTGCAGCTTGCTTAGCTCTCTCCACAAATACTCAGGACCATCCTCCTTCTCA
AACTCTTCTCTCAAGGAATGAGAAAGAACATTCCAATCTCCCTTTACACCGCCTTAAAGC
CTATCTTCATACCATTCACGTGCTTCACCTTCAAGTAGCCAACTCACCAAACGTACCTTG
AATGCACCATCGCCCCTATTGCTCTTCAATGCAATCAATTCGATCCTTCGGATGAACTTG
TCCACATCTTCTCCTTTCCCACCCTTGAAGACTTCATACCCATCTCCCGCCATAGGCCTT
GAGTTGATCTTCAAATGGATGCCAATCTGTAGATCAAAACCCTGTTAGAAGGATTCTCTT
CTCCTCCGTGGGGGCACCAGTTTATGTGAAGGATTGGGGGGCTGGCCTCTA
■■Homology search results ■■ -
sp_hit_id Q8TDI0
Definition sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens
Align length 80
Score (bit) 33.1
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912651|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_D01.
         (531 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5...    33   0.85 
sp|P58302|RAD50_THEVO DNA double-strand break repair rad50 ATPas...    32   2.5  

>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5
           OS=Homo sapiens GN=CHD5 PE=2 SV=1
          Length = 1954

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
 Frame = -2

Query: 230 GVKGDWNVLSHSLREEFEKEDGPEYL--WRELSKLQ-QGEHEDINV--HINRFEACW--R 72
           G+K +W ++   L   F+K+    YL  W++L   Q   E +DI++  + N  +A W  R
Sbjct: 586 GIKPEWMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHR 645

Query: 71  KIIKGLEENQMPPDFLKKDR 12
           +++ G E+ ++P   LKK +
Sbjct: 646 ELMLG-EDTRLPKRLLKKGK 664


>sp|P58302|RAD50_THEVO DNA double-strand break repair rad50 ATPase
           OS=Thermoplasma volcanium GN=rad50 PE=3 SV=1
          Length = 895

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 188 LSRNEKEHSNLPLHRLKAYLHTIHVLHLQVANS 286
           +  N+K+H N  LHRL A L TI    +++A S
Sbjct: 229 IKENKKDHLNEELHRLNAQLETIKKYEMELAES 261
tr_hit_id A9RQ41
Definition tr|A9RQ41|A9RQ41_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 149
Score (bit) 44.7
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912651|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_D01.
         (531 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RQ41|A9RQ41_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.003
tr|A9RK63|A9RK63_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.011
tr|A9T5U6|A9T5U6_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|A9TQT8|A9TQT8_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.033
tr|A9TM52|A9TM52_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.033
tr|A1YGR8|A1YGR8_9BILA Putative gag protein OS=Philodina roseola...    41   0.033
tr|A9SNJ3|A9SNJ3_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.043
tr|A1YGT0|A1YGT0_9BILA Putative gag protein OS=Adineta vaga PE=4...    40   0.056
tr|A1YGS1|A1YGS1_9BILA Putative gag protein OS=Adineta vaga PE=4...    40   0.056
tr|A9TIC5|A9TIC5_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.074
tr|A9RNL8|A9RNL8_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.074
tr|A1YGT3|A1YGT3_9BILA Putative gag protein OS=Adineta vaga PE=4...    40   0.074
tr|A1YGS4|A1YGS4_9BILA Putative gag protein OS=Adineta vaga PE=4...    40   0.074
tr|A9U5C4|A9U5C4_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.096
tr|A9TCC3|A9TCC3_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.096
tr|A9RZ76|A9RZ76_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.096
tr|A9T330|A9T330_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.16 
tr|A9T0G9|A9T0G9_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.16 
tr|A9TC78|A9TC78_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.48 
tr|A9RF97|A9RF97_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.48 
tr|Q9LKS8|Q9LKS8_ARATH Putative uncharacterized protein T15F17.m...    37   0.62 
tr|B2AZI2|B2AZI2_PODAN Predicted CDS Pa_3_4527 OS=Podospora anse...    37   0.62 
tr|A9SML3|A9SML3_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.81 
tr|A9SXA6|A9SXA6_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9SC18|A9SC18_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9RYH9|A9RYH9_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.4  
tr|A5C7E6|A5C7E6_VITVI Putative uncharacterized protein OS=Vitis...    35   2.4  
tr|A5AWN1|A5AWN1_VITVI Putative uncharacterized protein OS=Vitis...    34   5.3  
tr|Q7K4R6|Q7K4R6_DROME CG1868, isoform A OS=Drosophila melanogas...    34   5.3  
tr|Q5U0T5|Q5U0T5_DROME AT13626p OS=Drosophila melanogaster PE=2 ...    34   5.3  

>tr|A9RQ41|A9RQ41_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_69048 PE=4 SV=1
          Length = 1084

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 45/149 (30%), Positives = 62/149 (41%), Gaps = 1/149 (0%)
 Frame = -2

Query: 527 GQPPNPSHKLVPPRRRRESF*QGFDLQIGIHLKINSRPMAGDGYEVFKGGKGEDVDKFIR 348
           G P  P + LV PR        G  + +   L I S P       +FKG + E +   + 
Sbjct: 311 GLPGIPINPLVQPR--------GLPIVVPPGLSIASIP---PHLPLFKGTRDEYLSAHVE 359

Query: 347 R-IELIALKSNRGDGAFKVRLVSWLLEGEAREWYEDRL*GGVKGDWNVLSHSLREEFEKE 171
             IE++          F V   + L EG   EWY +        DW++L  +  EEF  E
Sbjct: 360 WFIEILTTCLITDVRYFLVWFPTTLKEG-VYEWYRNHP-ANTFVDWDMLQRAFLEEFRPE 417

Query: 170 DGPEYLWRELSKLQQGEHEDINVHINRFE 84
            G       LS  +QG+ EDI  +I RFE
Sbjct: 418 VGQNAALTALSSFRQGKDEDITSYIRRFE 446


>tr|A9RK63|A9RK63_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_67243 PE=4 SV=1
          Length = 365

 Score = 42.7 bits (99), Expect = 0.011
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
 Frame = -2

Query: 392 VFKGGKGEDVDKFIRR-IELIALKSNRGDGAFKVRLVSWLLEGEAREWYEDRL*GGVKGD 216
           +F G K +D    + R IE++    N  +G ++V   S  L GEA  WY D   G     
Sbjct: 129 LFYGTKDKDPTLHMERYIEILTTSLNGNEGYYQVWF-SGTLHGEAYNWYRDHDEGHFT-T 186

Query: 215 WNVLSHSLREEFEKEDGPEYLWRELSKLQQGEHEDINVHINRFEACWRKIIKGL 54
           W+ L  +    F  E G     R L  ++Q   E++  +I RF+    + + GL
Sbjct: 187 WSQLQVAFLNHFRPEVGQSTALRALGAVRQQRDEEMANYIMRFDLVCMRYVGGL 240


>tr|A9T5U6|A9T5U6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_88471 PE=4 SV=1
          Length = 732

 Score = 42.4 bits (98), Expect = 0.015
 Identities = 33/112 (29%), Positives = 46/112 (41%)
 Frame = -2

Query: 389 FKGGKGEDVDKFIRRIELIALKSNRGDGAFKVRLVSWLLEGEAREWYEDRL*GGVKGDWN 210
           F G K ED    I R   I   S  G+  + +   S  L GEA  WY D   G     W+
Sbjct: 155 FYGTKDEDPTLHIERYIEILTTSLIGNKGYYLVWFSGTLHGEAYNWYRDHDEGHFT-TWS 213

Query: 209 VLSHSLREEFEKEDGPEYLWRELSKLQQGEHEDINVHINRFEACWRKIIKGL 54
            L  +    F  E G     R L  ++Q   E++  +I RF+    + + GL
Sbjct: 214 QLQVAFLNHFRPEVGQSTALRALRAVRQQRDEEMANYIRRFDLVCMRYVGGL 265


>tr|A9TQT8|A9TQT8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_95940 PE=4 SV=1
          Length = 811

 Score = 41.2 bits (95), Expect = 0.033
 Identities = 31/112 (27%), Positives = 46/112 (41%)
 Frame = -2

Query: 389 FKGGKGEDVDKFIRRIELIALKSNRGDGAFKVRLVSWLLEGEAREWYEDRL*GGVKGDWN 210
           F G K ED    + R   I + S  G+  + +      L GEA  WY D   G     W+
Sbjct: 155 FYGTKDEDPTLHMERYIEILITSLIGNEGYYLVWFPGTLHGEAYNWYRDHDEGHFTA-WS 213

Query: 209 VLSHSLREEFEKEDGPEYLWRELSKLQQGEHEDINVHINRFEACWRKIIKGL 54
            L  +    F  E G     R L  ++Q   E++  +I RF+    + + GL
Sbjct: 214 QLQVAFLNHFRPEVGQSTALRALGAVRQQRDEEMANYIKRFDLVCMRYVGGL 265


>tr|A9TM52|A9TM52_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_94546 PE=4 SV=1
          Length = 828

 Score = 41.2 bits (95), Expect = 0.033
 Identities = 32/112 (28%), Positives = 46/112 (41%)
 Frame = -2

Query: 389 FKGGKGEDVDKFIRRIELIALKSNRGDGAFKVRLVSWLLEGEAREWYEDRL*GGVKGDWN 210
           F G K ED    + R   I   S  G+  + +   S  L GEA  WY D   G     W+
Sbjct: 155 FYGTKDEDPTLHMERYIEILTTSLIGNEGYYLVWFSETLHGEAYNWYRDHDEGHFT-TWS 213

Query: 209 VLSHSLREEFEKEDGPEYLWRELSKLQQGEHEDINVHINRFEACWRKIIKGL 54
            L  +    F  E G     R L  ++Q   E++  +I RF+    + + GL
Sbjct: 214 QLQVTFLNHFRPEVGQSTALRALGAVRQQRDEEMANYIRRFDLVCMRYVGGL 265


>tr|A1YGR8|A1YGR8_9BILA Putative gag protein OS=Philodina roseola
           PE=4 SV=1
          Length = 601

 Score = 41.2 bits (95), Expect = 0.033
 Identities = 27/101 (26%), Positives = 51/101 (50%)
 Frame = -2

Query: 395 EVFKGGKGEDVDKFIRRIELIALKSNRGDGAFKVRLVSWLLEGEAREWYEDRL*GGVKGD 216
           ++F+GGK EDV +++  IE +   +   D + K+ L+ + L GEAR WY++         
Sbjct: 266 KIFQGGK-EDVKQWLEDIEQLFDTAQIPD-SHKLDLIFYSLRGEARRWYKNT--KSSLTS 321

Query: 215 WNVLSHSLREEFEKEDGPEYLWRELSKLQQGEHEDINVHIN 93
           W++    ++E F      E  +++L    QG ++ +    N
Sbjct: 322 WSIFVKEVKEAFLSPFHDELAFKKLESYTQGVNQPVRSFYN 362


>tr|A9SNJ3|A9SNJ3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_81852 PE=4 SV=1
          Length = 544

 Score = 40.8 bits (94), Expect = 0.043
 Identities = 31/112 (27%), Positives = 46/112 (41%)
 Frame = -2

Query: 389 FKGGKGEDVDKFIRRIELIALKSNRGDGAFKVRLVSWLLEGEAREWYEDRL*GGVKGDWN 210
           F G K ED    + R   I   S  G+  + +      L GEA  WY D   G     W+
Sbjct: 38  FYGTKDEDPTLHMERYIEILTTSVIGNEGYYLVWFPGTLHGEAYNWYRDHDEGHFT-TWS 96

Query: 209 VLSHSLREEFEKEDGPEYLWRELSKLQQGEHEDINVHINRFEACWRKIIKGL 54
            L  +    F +E G     R L  ++Q   E++  +I RF+    + + GL
Sbjct: 97  QLQVAFLNHFRREVGQSTALRALGAVRQQRDEEMANYIRRFDLVCMRYVGGL 148


>tr|A1YGT0|A1YGT0_9BILA Putative gag protein OS=Adineta vaga PE=4
           SV=1
          Length = 327

 Score = 40.4 bits (93), Expect = 0.056
 Identities = 27/94 (28%), Positives = 41/94 (43%)
 Frame = -2

Query: 389 FKGGKGEDVDKFIRRIELIALKSNRGDGAFKVRLVSWLLEGEAREWYEDRL*GGVKGDWN 210
           F G + E + KFI  IE I    N  D        +  ++GEA+ WYE+        +W 
Sbjct: 34  FTGNEEEKITKFISNIERIGKMINANDDILYCMCTA-KIDGEAKRWYENNT---SLINWE 89

Query: 209 VLSHSLREEFEKEDGPEYLWRELSKLQQGEHEDI 108
            L  +L E F   D    ++ +L + +Q   E I
Sbjct: 90  QLKPALLERFTTPDSSTKIFEQLKERKQRPDESI 123


>tr|A1YGS1|A1YGS1_9BILA Putative gag protein OS=Adineta vaga PE=4
           SV=1
          Length = 327

 Score = 40.4 bits (93), Expect = 0.056
 Identities = 27/94 (28%), Positives = 41/94 (43%)
 Frame = -2

Query: 389 FKGGKGEDVDKFIRRIELIALKSNRGDGAFKVRLVSWLLEGEAREWYEDRL*GGVKGDWN 210
           F G + E + KFI  IE I    N  D        +  ++GEA+ WYE+        +W 
Sbjct: 34  FTGNEEEKITKFISNIERIGKMINANDDILYCMCTA-KIDGEAKRWYENNT---SLINWE 89

Query: 209 VLSHSLREEFEKEDGPEYLWRELSKLQQGEHEDI 108
            L  +L E F   D    ++ +L + +Q   E I
Sbjct: 90  QLKPALLERFTTPDSSTKIFEQLKERKQRPDESI 123


>tr|A9TIC5|A9TIC5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_93139 PE=4 SV=1
          Length = 654

 Score = 40.0 bits (92), Expect = 0.074
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
 Frame = -2

Query: 392 VFKGGKGEDVDKFIRR-IELIALKSNRGDGAFKVRLVSWLLEGEAREWYEDRL*GGVKGD 216
           +F G K ED    + R IE++     R +G + V   S  L  EA  WY D   G     
Sbjct: 130 LFYGTKDEDPTLHMERYIEILTTSLIRIEGYYLVWF-SRTLHDEAYNWYRDHDEGHFT-T 187

Query: 215 WNVLSHSLREEFEKEDGPEYLWRELSKLQQGEHEDINVHINRFEACWRKIIKGL 54
           W+ L  +    F  E G     R L  ++Q   E++  +I RF+    + ++GL
Sbjct: 188 WSQLQVAFLNHFRPEVGQSTALRALGAVRQQRDEEMANYIRRFDLVCMRYVRGL 241