BP912658
Clone id YMU001_000021_D08
Library
Length 420
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTTGTTTTTTTTTTTTCCTGTAAAATTCAGTTATCTATGTTCTCATTATGATGGCATC
TACGTGGTCTTATGGGATTCTTGTCCCTGAAGGTTACGTGCATGTTTCGAGATGGAAAAA
TTGATCTAAAATCTATACCCTGTTTTCATCTACATCAGGAAATTACAAGTGTGGCAGAAA
CAAGTTTGGAAGACCTGCAGGCAAAGCTCCAAGAGGGGGCACTCCATGACCCTTCTCTAT
ATTTGCCATACAATGTATGGCTGCATAAAAGCCACCTTGAAATCGAGCATTCCACTTATG
CTTGTTATCTACAGACTTAAACTCTAACACGCAGGCAACCCTGTCTGAGTTGATGATGGT
CTTGGAATTAGGGACAGCGCGCTGTAGTGGCCTCACATCATCAATATGGATGACTCCATC
■■Homology search results ■■ -
sp_hit_id A8YUC4
Definition sp|A8YUC4|SECA_LACH4 Protein translocase subunit secA OS=Lactobacillus helveticus (strain DPC 4571)
Align length 66
Score (bit) 32.3
E-value 0.75
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912658|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_D08.
(402 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A8YUC4|SECA_LACH4 Protein translocase subunit secA OS=Lactoba... 32 0.75
sp|Q5A970|MRS2_CANAL Mitochondrial inner membrane magnesium tran... 32 1.3
sp|Q5FL75|SECA_LACAC Protein translocase subunit secA OS=Lactoba... 30 2.8
sp|Q86JD4|SEC11_DICDI Signal peptidase complex catalytic subunit... 30 2.8
sp|Q9BY15|EMR3_HUMAN EGF-like module-containing mucin-like hormo... 30 3.7
sp|Q7T0S2|NUDC1_XENLA NudC domain-containing protein 1 OS=Xenopu... 30 4.9
sp|O14187|SPP42_SCHPO Pre-mRNA-splicing factor spp42 OS=Schizosa... 29 8.3

>sp|A8YUC4|SECA_LACH4 Protein translocase subunit secA
OS=Lactobacillus helveticus (strain DPC 4571) GN=secA
PE=3 SV=1
Length = 799

Score = 32.3 bits (72), Expect = 0.75
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3

Query: 36 WHLRGLMGFLSLKVTCMFRDGKIDLKSIPCFHLHQEITSVAETSLEDLQAKLQEGALHDP 215
W L L F+S +T ID K+I L +++ + E + ED +E AL DP
Sbjct: 664 WRLDSLRDFISSSLTSEQVTDSIDFKTISVEDLKKKLYDIVEKNFED-----KEKALGDP 718

Query: 216 SLYLPY 233
S L +
Sbjct: 719 SQMLEF 724


>sp|Q5A970|MRS2_CANAL Mitochondrial inner membrane magnesium
transporter mrs2 OS=Candida albicans GN=MRS2 PE=3 SV=1
Length = 468

Score = 31.6 bits (70), Expect = 1.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2

Query: 86 VSRWKN*SKIYTLFSSTSGNYKCGRNKFGRPAGK 187
V RWK S +Y LF + G Y KF RP +
Sbjct: 419 VDRWKRGSFLYRLFYGSGGKYSKPSKKFDRPTNR 452


>sp|Q5FL75|SECA_LACAC Protein translocase subunit secA
OS=Lactobacillus acidophilus GN=secA PE=3 SV=1
Length = 799

Score = 30.4 bits (67), Expect = 2.8
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3

Query: 36 WHLRGLMGFLSLKVTCMFRDGKIDLKSIPCFHLHQEITSVAETSLEDLQAKLQEGALHDP 215
W L L F+S + ID K+I L +++ + E + ED +E AL DP
Sbjct: 664 WRLDSLRDFISSSLASEQVTDSIDFKTISVEDLKKKLYDIVEKNFED-----KEKALGDP 718

Query: 216 SLYLPY 233
S L +
Sbjct: 719 SQMLEF 724


>sp|Q86JD4|SEC11_DICDI Signal peptidase complex catalytic subunit
sec11 OS=Dictyostelium discoideum GN=sec11 PE=3 SV=1
Length = 179

Score = 30.4 bits (67), Expect = 2.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3

Query: 99 KIDLKSIPCFHLHQEITSVAETSLEDLQAKLQEGALHDPSLYLPYNVWLHKSHL 260
KI+ K IP H +I E L D++ K + D LY P WL + H+
Sbjct: 86 KIEGKEIPIVHRILQIHE-KEDGLYDIRTKGDNNNVDDVGLYSPGQRWLSRDHI 138


>sp|Q9BY15|EMR3_HUMAN EGF-like module-containing mucin-like hormone
receptor-like 3 OS=Homo sapiens GN=EMR3 PE=1 SV=1
Length = 652

Score = 30.0 bits (66), Expect = 3.7
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3

Query: 138 QEITSVAETSLEDLQAKLQEGALHDP 215
QEI+S A T L D+++K+ E AL DP
Sbjct: 155 QEISSTATTILRDVESKVLETALKDP 180


>sp|Q7T0S2|NUDC1_XENLA NudC domain-containing protein 1 OS=Xenopus
laevis GN=nudcd1 PE=2 SV=1
Length = 586

Score = 29.6 bits (65), Expect = 4.9
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3

Query: 87 FRDGKIDLKSIPCFHLHQEITSVAETSLEDLQAKLQEGALHDPSLYLPYNVWLHKSHLEI 266
F K+ L +PC+++ + +VAE +L D Q L YL N WL S I
Sbjct: 19 FESYKLSLDPLPCYNVELD-AAVAEVTLRDDQYTLDHMRAFGMYNYLHCNPWLPNSVFYI 77

Query: 267 E 269
+
Sbjct: 78 D 78


>sp|O14187|SPP42_SCHPO Pre-mRNA-splicing factor spp42
OS=Schizosaccharomyces pombe GN=spp42 PE=1 SV=1
Length = 2363

Score = 28.9 bits (63), Expect = 8.3
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3

Query: 159 ETSLEDLQAKLQEGALH-DPSLYLPYNVWLHKSHLEIEHSTYACYL 293
+ +L +L ++ A+ DP+ +P++ + H +E EH+ A L
Sbjct: 382 QLTLHELDTSPEDSAIEEDPNFEIPFDPFFHSEDIEFEHTASALIL 427


tr_hit_id A8FP29
Definition tr|A8FP29|A8FP29_CAMJ8 Putative uncharacterized protein OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
Align length 42
Score (bit) 33.5
E-value 5.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912658|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_D08.
(402 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8FP29|A8FP29_CAMJ8 Putative uncharacterized protein OS=Campy... 33 5.4
tr|A6NRJ0|A6NRJ0_9BACE Putative uncharacterized protein OS=Bacte... 33 5.5
tr|A3Y8A8|A3Y8A8_9GAMM Quinolinate synthetase OS=Marinomonas sp.... 33 7.0

>tr|A8FP29|A8FP29_CAMJ8 Putative uncharacterized protein
OS=Campylobacter jejuni subsp. jejuni serotype O:6
(strain 81116 / NCTC 11828) GN=C8J_1619 PE=4 SV=1
Length = 342

Score = 33.5 bits (75), Expect = 5.4
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -2

Query: 260 KVAFMQPYIVWQI*RRVMECPLLELCLQVFQTCFCHTCNFLM 135
K F+Q Y +I +R+++ P LEL L T C +CN LM
Sbjct: 48 KKFFLQKYFEKRIKKRIIDIPYLELVLTTKCTMRCQSCNNLM 89


>tr|A6NRJ0|A6NRJ0_9BACE Putative uncharacterized protein
OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_00818
PE=4 SV=1
Length = 415

Score = 33.5 bits (75), Expect = 5.5
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1

Query: 124 VFIYIRKLQVWQKQVWKTCRQSSKRGHSMTLLYICHTMYGCIKATLKSSIPLML 285
+F+ I + + K WKTC +K G S LLY+C T + L ++ PL+L
Sbjct: 35 IFVTITERKGQMKLDWKTC---AKVGVSAFLLYLCITYWPQFTGLLSAATPLLL 85


>tr|A3Y8A8|A3Y8A8_9GAMM Quinolinate synthetase OS=Marinomonas sp.
MED121 GN=MED121_11800 PE=4 SV=1
Length = 470

Score = 33.1 bits (74), Expect = 7.0
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +3

Query: 84 MFRDGKIDLKSIPCFHLHQEITSVAETSLEDLQAKLQEGALHDPSLYLPYNVWLHKSH 257
+F+ K+ L C +L +S A+T L DL+A L E +L +PS Y+ W K H
Sbjct: 3 LFKAFKLGLTLCLCLNL---ASSYADTKLPDLEADLDEQSLSNPS-YIVGQHWFRKLH 56