BP912661
Clone id YMU001_000021_D11
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGAGCCACAATACTCCTGGGCAGCTCTATTTTGAGTTTTTTGGTGCCTTCCACGTGGACA
CCTTGCATAGAGTCCATAGGACATGCATACTCCAGATTCAAAACATCAGCTTGCTAATAG
CAGTTGAAGACCTACCTTCCACCTAACAAGATTGAGTCTCCTGCTAACTTACCTTTTGAT
AAATAACGTCCATCCTAATTACTAAGAATAAGCCAATGCAAAGCAGCACCTTGGAACAAA
GAACACGCACAAAACATTCTAGCAACCTTTGTTTGTGTTGTTATTGCCATATGTTTGTAT
TGAGAATAACAAAAAATGATAGAGAACTCACTCAACAATAAAGCCTAAAGGGCTGTCATT
GCCTCCTGGCTAACGTAGCCATGGTAAGCACTAGCCAATGCCATGATACATGCGCCATCT
GACAATATAGGTATCACATCTATGATGCATGCTGCCGTCTCTAGCTGACCCGTCCTTCCC
AAAAGATCAATTATGCAAACATAATGTGCCACCCCAGGTACAACGCCGAACAAC
■■Homology search results ■■ -
sp_hit_id Q9ZVG8
Definition sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidopsis thaliana
Align length 52
Score (bit) 47.8
E-value 3.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912661|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_D11.
(534 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protei... 48 3e-05
sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protei... 47 4e-05
sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containi... 47 8e-05
sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protei... 46 1e-04
sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protei... 45 2e-04
sp|Q9LFL5|PP390_ARATH Putative pentatricopeptide repeat-containi... 45 2e-04
sp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protei... 45 2e-04
sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containi... 45 2e-04
sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protei... 45 3e-04
sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containi... 45 3e-04
sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protei... 45 3e-04
sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protei... 44 4e-04
sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protei... 44 6e-04
sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protei... 43 8e-04
sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protei... 43 0.001
sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protei... 43 0.001
sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containi... 43 0.001
sp|P0C8Q8|PP394_ARATH Pentatricopeptide repeat-containing protei... 42 0.001
sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protei... 42 0.001
sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protei... 42 0.002
sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protei... 42 0.002
sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containi... 42 0.002
sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protei... 42 0.002
sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protei... 42 0.002
sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protei... 42 0.002
sp|Q9FG85|PP415_ARATH Pentatricopeptide repeat-containing protei... 42 0.002
sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protei... 42 0.002
sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protei... 42 0.002
sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protei... 41 0.003
sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protei... 41 0.003

>sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein
At1g26900, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E54 PE=2 SV=1
Length = 572

Score = 47.8 bits (112), Expect = 3e-05
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = -2

Query: 530 FGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASAYHGY 375
+ P V HY C++DLLGR GQLE A +I +PI SD AL +A Y
Sbjct: 461 YSFTPKVEHYGCVVDLLGRAGQLEEAYELIRNLPITSDSTAWRALLAACRVY 512


>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic OS=Arabidopsis thaliana
GN=PCMP-H73 PE=2 SV=1
Length = 866

Score = 47.4 bits (111), Expect = 4e-05
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = -2

Query: 530 FGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASA 387
+GV P + HY C++DLLGR G+L+ A I +P+ D A AL +A
Sbjct: 627 YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNA 674


>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing
protein At5g59200, chloroplastic OS=Arabidopsis thaliana
GN=PCMP-E41 PE=3 SV=1
Length = 544

Score = 46.6 bits (109), Expect = 8e-05
Identities = 24/49 (48%), Positives = 30/49 (61%)
Frame = -2

Query: 533 LFGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASA 387
+F V P + HY CI+DLLGR G+LE A I+ IPI D + L SA
Sbjct: 385 VFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSA 433


>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein
At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650

Score = 46.2 bits (108), Expect = 1e-04
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = -2

Query: 530 FGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASA 387
+G PG+ HY C++DLLGR G L+ A II +PI +D L SA
Sbjct: 409 YGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSA 456


>sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protein
At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2
Length = 658

Score = 45.4 bits (106), Expect = 2e-04
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -2

Query: 527 GVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMAL--ASAYHG 378
G+ P HY CIID+LGR G L+ A ID +P+ D AL A ++HG
Sbjct: 489 GIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHG 540


>sp|Q9LFL5|PP390_ARATH Putative pentatricopeptide repeat-containing
protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92
PE=3 SV=1
Length = 850

Score = 45.1 bits (105), Expect = 2e-04
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = -2

Query: 533 LFGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPI 426
+FGV PG HY C++DLLGR G+L A +I+ +P+
Sbjct: 608 VFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643


>sp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protein
At3g18970 OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1
Length = 472

Score = 45.1 bits (105), Expect = 2e-04
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = -2

Query: 530 FGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASA 387
FGV P + HY CI+DLLG+ G+++ A I +PI D + +L +A
Sbjct: 353 FGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIKPDAILLRSLCNA 400


>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing
protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86
PE=3 SV=1
Length = 689

Score = 45.1 bits (105), Expect = 2e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -2

Query: 527 GVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPI 426
G+ P V HY C++DLLGR G+L+ A +ID +PI
Sbjct: 445 GIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPI 478


>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein
At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2
Length = 823

Score = 44.7 bits (104), Expect = 3e-04
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -2

Query: 530 FGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASA--YHGYV 372
+G+ P + HY C++D+ GR GQLETA I + + D + AL SA HG V
Sbjct: 582 YGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNV 636


>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing
protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52
PE=3 SV=1
Length = 623

Score = 44.7 bits (104), Expect = 3e-04
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = -2

Query: 518 PGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASA 387
PG HY C++DLLGR G+L+ A I+ +P+ DGA AL A
Sbjct: 392 PGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGA 435


tr_hit_id Q75HW7
Definition tr|Q75HW7|Q75HW7_ORYSJ cDNA, clone: J100062A03, full insert sequence OS=Oryza sativa subsp. japonica
Align length 63
Score (bit) 49.3
E-value 0.0001
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912661|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_D11.
(534 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q75HW7|Q75HW7_ORYSJ cDNA, clone: J100062A03, full insert sequ... 49 1e-04
tr|A7PZB8|A7PZB8_VITVI Chromosome chr15 scaffold_40, whole genom... 49 1e-04
tr|A5C8U0|A5C8U0_VITVI Putative uncharacterized protein OS=Vitis... 49 1e-04
tr|A3B4F7|A3B4F7_ORYSJ Putative uncharacterized protein OS=Oryza... 49 1e-04
tr|A2Y537|A2Y537_ORYSI Putative uncharacterized protein OS=Oryza... 49 1e-04
tr|A7PFZ2|A7PFZ2_VITVI Chromosome chr6 scaffold_15, whole genome... 49 2e-04
tr|B8AMA2|B8AMA2_ORYSI Putative uncharacterized protein OS=Oryza... 48 3e-04
tr|B4F908|B4F908_MAIZE Putative uncharacterized protein OS=Zea m... 48 4e-04
tr|A7QNK0|A7QNK0_VITVI Chromosome chr2 scaffold_132, whole genom... 48 4e-04
tr|Q84TV5|Q84TV5_ORYSJ Putative uncharacterized protein OSJNBa00... 47 5e-04
tr|Q7Y1D6|Q7Y1D6_ORYSJ Putative pentatricopeptide repeat contain... 47 5e-04
tr|Q10BI4|Q10BI4_ORYSJ cDNA clone:J023018C14, full insert sequen... 47 5e-04
tr|Q0DMD0|Q0DMD0_ORYSJ Os03g0816600 protein (Fragment) OS=Oryza ... 47 5e-04
tr|Q0DLJ0|Q0DLJ0_ORYSJ Os03g0861900 protein OS=Oryza sativa subs... 47 5e-04
tr|B8AP69|B8AP69_ORYSI Putative uncharacterized protein OS=Oryza... 47 5e-04
tr|A5AEX5|A5AEX5_VITVI Putative uncharacterized protein OS=Vitis... 47 5e-04
tr|A3AP14|A3AP14_ORYSJ Putative uncharacterized protein OS=Oryza... 47 5e-04
tr|Q6F382|Q6F382_ORYSJ Os03g0795200 protein OS=Oryza sativa subs... 47 6e-04
tr|B8AN26|B8AN26_ORYSI Putative uncharacterized protein OS=Oryza... 47 6e-04
tr|A7Q618|A7Q618_VITVI Chromosome chr14 scaffold_54, whole genom... 47 6e-04
tr|A7PX52|A7PX52_VITVI Chromosome chr12 scaffold_36, whole genom... 47 6e-04
tr|A7PD58|A7PD58_VITVI Chromosome chr17 scaffold_12, whole genom... 47 6e-04
tr|A7NYH7|A7NYH7_VITVI Chromosome chr6 scaffold_3, whole genome ... 47 6e-04
tr|A5BUK5|A5BUK5_VITVI Putative uncharacterized protein OS=Vitis... 47 6e-04
tr|A5BP14|A5BP14_VITVI Putative uncharacterized protein OS=Vitis... 47 6e-04
tr|A3ANL0|A3ANL0_ORYSJ Putative uncharacterized protein OS=Oryza... 47 6e-04
tr|A2XMV7|A2XMV7_ORYSI Putative uncharacterized protein OS=Oryza... 47 6e-04
tr|A7R8M9|A7R8M9_VITVI Chromosome undetermined scaffold_2768, wh... 47 8e-04
tr|A7PA64|A7PA64_VITVI Chromosome chr14 scaffold_9, whole genome... 47 8e-04
tr|A7PPC3|A7PPC3_VITVI Chromosome chr8 scaffold_23, whole genome... 46 0.001

>tr|Q75HW7|Q75HW7_ORYSJ cDNA, clone: J100062A03, full insert
sequence OS=Oryza sativa subsp. japonica
GN=OSJNBb0042J17.15 PE=2 SV=1
Length = 551

Score = 49.3 bits (116), Expect = 1e-04
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = -2

Query: 533 LFGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASA--YHGYVSQEA 360
++GV PGV HY C++DLLGR+GQ+ A ++ +P+ +D +L SA HG V
Sbjct: 382 VYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAV 441

Query: 359 MTA 351
+ A
Sbjct: 442 LAA 444


>tr|A7PZB8|A7PZB8_VITVI Chromosome chr15 scaffold_40, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00026821001
PE=4 SV=1
Length = 871

Score = 49.3 bits (116), Expect = 1e-04
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = -2

Query: 530 FGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASAYHGYVSQE 363
FGVVPG HY C++DLL R G+L+ A +I +P+ A +AL SA Y + E
Sbjct: 630 FGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVE 685


>tr|A5C8U0|A5C8U0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_018821 PE=4 SV=1
Length = 871

Score = 49.3 bits (116), Expect = 1e-04
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = -2

Query: 530 FGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASAYHGYVSQE 363
FGVVPG HY C++DLL R G+L+ A +I +P+ A +AL SA Y + E
Sbjct: 630 FGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVE 685


>tr|A3B4F7|A3B4F7_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_017929 PE=4 SV=1
Length = 551

Score = 49.3 bits (116), Expect = 1e-04
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = -2

Query: 533 LFGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASA--YHGYVSQEA 360
++GV PGV HY C++DLLGR+GQ+ A ++ +P+ +D +L SA HG V
Sbjct: 382 VYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAV 441

Query: 359 MTA 351
+ A
Sbjct: 442 LAA 444


>tr|A2Y537|A2Y537_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_20110 PE=4 SV=1
Length = 551

Score = 49.3 bits (116), Expect = 1e-04
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = -2

Query: 533 LFGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASA--YHGYVSQEA 360
++GV PGV HY C++DLLGR+GQ+ A ++ +P+ +D +L SA HG V
Sbjct: 382 VYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAV 441

Query: 359 MTA 351
+ A
Sbjct: 442 LAA 444


>tr|A7PFZ2|A7PFZ2_VITVI Chromosome chr6 scaffold_15, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00017309001
PE=4 SV=1
Length = 682

Score = 48.9 bits (115), Expect = 2e-04
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = -2

Query: 530 FGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMAL 396
+GV P + HY C++D LGR G LE A I+ +P+ +DGA + AL
Sbjct: 328 YGVAPELKHYACMVDCLGRAGMLEDAERFIEEMPVEADGAVLGAL 372


>tr|B8AMA2|B8AMA2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_14066 PE=4 SV=1
Length = 628

Score = 48.1 bits (113), Expect = 3e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = -2

Query: 530 FGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASA 387
+G+ P V HY C++DLLGR+G L+ A +I +P+ DG L SA
Sbjct: 405 YGIQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSA 452


>tr|B4F908|B4F908_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 606

Score = 47.8 bits (112), Expect = 4e-04
Identities = 24/51 (47%), Positives = 30/51 (58%)
Frame = -2

Query: 527 GVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASAYHGY 375
G+VPG+ HY C+ DLL R+GQLE A ID +PI L SA G+
Sbjct: 365 GIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGH 415


>tr|A7QNK0|A7QNK0_VITVI Chromosome chr2 scaffold_132, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00002558001
PE=4 SV=1
Length = 814

Score = 47.8 bits (112), Expect = 4e-04
Identities = 27/56 (48%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -2

Query: 533 LFGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASA--YHGYV 372
L GVVP + HY C+IDL GR G LE A ID +PI+ D L S HG V
Sbjct: 649 LHGVVPCLEHYACMIDLFGRVGLLEDAKRTIDQMPIMPDAQIWQILLSGCNIHGNV 704


>tr|Q84TV5|Q84TV5_ORYSJ Putative uncharacterized protein
OSJNBa0094J08.24 OS=Oryza sativa subsp. japonica
GN=OSJNBa0094J08.24 PE=4 SV=1
Length = 704

Score = 47.4 bits (111), Expect = 5e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = -2

Query: 530 FGVVPGVAHYVCIIDLLGRTGQLETAACIIDVIPILSDGACIMALASA 387
+G+ P V HY C++DLLGR+G L+ A +I +P+ DG L SA
Sbjct: 471 YGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSA 518