BP912665
Clone id YMU001_000021_E04
Library
Length 529
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CTCTCAAATGGGGAATATTCAAATGTGATGCACTGTTTAGAATAGGAGAGGGTGTTGCAT
TGTGTCAAAATTGGTGTATTGAGACATTGCGATGAAGGTCTGCAAGCCTATCTCTACTTC
TATGGAGATGGGGGTGAAGCTCAGTCTCCTTGACGTTGGAAACTTTTTCTGTGCCACTGT
GTATTGGGAGGCTGTTGGTGGTGCCTTGTTTAAGGCTAGACATTCAATTTGTAGTCTGGC
ATATAACCAGATTTATGCATAGTCGAGGGATTAAGCTTGCAGTCTCACCTTGAGGAGATG
TTTATGTAGCACGTCGACTTAGCATAGGTATGCAGTTAAGCATATGTTTCGCTATCCATG
AGTTGTTTTTGCTTCATGCTTGGCAGCTCATGCATTTAGTGGTTTAGCAAGAAGTAGCCT
ATTGGGGTCACAGTATGGGGCAGCTTTCACACTGGTGCCTGATTGTGTTTATCTCAAAGG
CCTTGTTTCTGTATCACTGACAGTTTGAGCGCATTGGAAACTGCAAGCA
■■Homology search results ■■ -
sp_hit_id Q5DRB0
Definition sp|Q5DRB0|PCDGD_PANTR Protocadherin gamma-B1 OS=Pan troglodytes
Align length 30
Score (bit) 30.0
E-value 7.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912665|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_E04.
(529 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5DRB0|PCDGD_PANTR Protocadherin gamma-B1 OS=Pan troglodytes ... 30 7.1
sp|Q9Y5G3|PCDGD_HUMAN Protocadherin gamma-B1 OS=Homo sapiens GN=... 30 7.1
sp|P32710|NRFE_ECOLI Cytochrome c-type biogenesis protein nrfE O... 30 7.1

>sp|Q5DRB0|PCDGD_PANTR Protocadherin gamma-B1 OS=Pan troglodytes
GN=PCDHGB1 PE=3 SV=1
Length = 927

Score = 30.0 bits (66), Expect = 7.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3

Query: 236 DYKLNV*P*TRHHQQPPNTQWHRKSFQRQG 147
D+K+ P HQ PPNT W QR G
Sbjct: 791 DHKIAYDPSLSSHQAPPNTDWRFSQAQRPG 820


>sp|Q9Y5G3|PCDGD_HUMAN Protocadherin gamma-B1 OS=Homo sapiens
GN=PCDHGB1 PE=2 SV=1
Length = 927

Score = 30.0 bits (66), Expect = 7.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3

Query: 236 DYKLNV*P*TRHHQQPPNTQWHRKSFQRQG 147
D+K+ P HQ PPNT W QR G
Sbjct: 791 DHKIAYDPSLSSHQAPPNTDWRFSQAQRPG 820


>sp|P32710|NRFE_ECOLI Cytochrome c-type biogenesis protein nrfE
OS=Escherichia coli (strain K12) GN=nrfE PE=3 SV=2
Length = 552

Score = 30.0 bits (66), Expect = 7.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3

Query: 336 LSICFAIHELFLLHAWQLMHLVV*QEV---AYWGHSMGQLSHWCLIVFISKALFLYH 497
L+ CF I + +++ Q + ++ E+ A WG G L W L++ ALF +H
Sbjct: 40 LTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLWVLLLSAWSALFAWH 96


tr_hit_id A5BSL1
Definition tr|A5BSL1|A5BSL1_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 88
Score (bit) 37.4
E-value 0.48
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912665|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_E04.
(529 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5BSL1|A5BSL1_VITVI Putative uncharacterized protein OS=Vitis... 37 0.48
tr|Q45W64|Q45W64_PHACH Polyprotein OS=Phanerochaete chrysosporiu... 36 1.1
tr|A5AD04|A5AD04_VITVI Putative uncharacterized protein OS=Vitis... 30 3.2
tr|Q9XG91|Q9XG91_PHAVU Tpv2-1c protein (Fragment) OS=Phaseolus v... 30 5.7

>tr|A5BSL1|A5BSL1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_001281 PE=4 SV=1
Length = 1008

Score = 37.4 bits (85), Expect = 0.48
Identities = 27/88 (30%), Positives = 42/88 (47%)
Frame = +2

Query: 92 MKVCKPISTSMEMGVKLSLLDVGNFFCATVYWEAVGGALFKARHSICSLAYNQIYA*SRD 271
MK C P+ T E+G+KL+ G AT+Y + VG ++ + S + +YA S
Sbjct: 773 MKDCNPVLTPTELGLKLTKHGAGKMVNATLYKQIVGSLMY-----LTSTRPDIMYAVS-- 825

Query: 272 *ACSLTLRRCLCSTST*HRYAVKHMFRY 355
+ R + + S H A K +FRY
Sbjct: 826 -----LISRYMENPSEVHLLAAKRIFRY 848


>tr|Q45W64|Q45W64_PHACH Polyprotein OS=Phanerochaete chrysosporium
RP-78 GN=pol PE=4 SV=1
Length = 1338

Score = 36.2 bits (82), Expect = 1.1
Identities = 26/88 (29%), Positives = 38/88 (43%)
Frame = +2

Query: 92 MKVCKPISTSMEMGVKLSLLDVGNFFCATVYWEAVGGALFKARHSICSLAYNQIYA*SRD 271
M+ CKP+ST ++ GVKL Y A+G ++ A + +A+
Sbjct: 1090 MQDCKPVSTPLDPGVKLEPTPEDQTPADVPYAAAIGSLMYAATGTRPDIAF--------- 1140

Query: 272 *ACSLTLRRCLCSTST*HRYAVKHMFRY 355
TL + S H AVKH+FRY
Sbjct: 1141 --AVQTLSQFTSRPSATHWTAVKHVFRY 1166


>tr|A5AD04|A5AD04_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_033522 PE=4 SV=1
Length = 851

Score = 29.6 bits (65), Expect(2) = 3.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2

Query: 50 GCCIVSKLVY*DIAMKVCKPISTSMEMGVKL 142
GC + K +I M C+P++T +E G+KL
Sbjct: 648 GCMVPEKQCQKEIGMSGCQPVNTLIEKGLKL 678



Score = 23.5 bits (49), Expect(2) = 3.2
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +3

Query: 183 IGRLLVVPCLRLDIQFVVWHITRFMHSRG 269
+GRL+ + R D+ + + ++++MH+ G
Sbjct: 696 VGRLMYLAYTRPDLAYALSVVSQYMHNPG 724


>tr|Q9XG91|Q9XG91_PHAVU Tpv2-1c protein (Fragment) OS=Phaseolus
vulgaris GN=Tpv2-1c PE=2 SV=1
Length = 374

Score = 30.0 bits (66), Expect(2) = 5.7
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2

Query: 92 MKVCKPISTSMEMGVKLSLLDVGNFFCATVYWEAVG 199
M+ C P+S ME G KLS D G A+ Y VG
Sbjct: 124 MENCNPVSIPMEPGAKLSKFDGGERVDASRYRSLVG 159



Score = 22.3 bits (46), Expect(2) = 5.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3

Query: 183 IGRLLVVPCLRLDIQFVVWHITRFM 257
+G L + C R D+ V I+RFM
Sbjct: 158 VGSLRYLTCTRPDLSLSVGTISRFM 182