BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912665|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_E04.
         (529 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5DRB0|PCDGD_PANTR Protocadherin gamma-B1 OS=Pan troglodytes ...    30   7.1  
sp|Q9Y5G3|PCDGD_HUMAN Protocadherin gamma-B1 OS=Homo sapiens GN=...    30   7.1  
sp|P32710|NRFE_ECOLI Cytochrome c-type biogenesis protein nrfE O...    30   7.1  

>sp|Q5DRB0|PCDGD_PANTR Protocadherin gamma-B1 OS=Pan troglodytes
           GN=PCDHGB1 PE=3 SV=1
          Length = 927

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 236 DYKLNV*P*TRHHQQPPNTQWHRKSFQRQG 147
           D+K+   P    HQ PPNT W     QR G
Sbjct: 791 DHKIAYDPSLSSHQAPPNTDWRFSQAQRPG 820


>sp|Q9Y5G3|PCDGD_HUMAN Protocadherin gamma-B1 OS=Homo sapiens
           GN=PCDHGB1 PE=2 SV=1
          Length = 927

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 236 DYKLNV*P*TRHHQQPPNTQWHRKSFQRQG 147
           D+K+   P    HQ PPNT W     QR G
Sbjct: 791 DHKIAYDPSLSSHQAPPNTDWRFSQAQRPG 820


>sp|P32710|NRFE_ECOLI Cytochrome c-type biogenesis protein nrfE
           OS=Escherichia coli (strain K12) GN=nrfE PE=3 SV=2
          Length = 552

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 336 LSICFAIHELFLLHAWQLMHLVV*QEV---AYWGHSMGQLSHWCLIVFISKALFLYH 497
           L+ CF I +  +++  Q  + ++  E+   A WG   G L  W L++    ALF +H
Sbjct: 40  LTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLWVLLLSAWSALFAWH 96

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912665|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_E04.
         (529 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BSL1|A5BSL1_VITVI Putative uncharacterized protein OS=Vitis...    37   0.48 
tr|Q45W64|Q45W64_PHACH Polyprotein OS=Phanerochaete chrysosporiu...    36   1.1  
tr|A5AD04|A5AD04_VITVI Putative uncharacterized protein OS=Vitis...    30   3.2  
tr|Q9XG91|Q9XG91_PHAVU Tpv2-1c protein (Fragment) OS=Phaseolus v...    30   5.7  

>tr|A5BSL1|A5BSL1_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_001281 PE=4 SV=1
          Length = 1008

 Score = 37.4 bits (85), Expect = 0.48
 Identities = 27/88 (30%), Positives = 42/88 (47%)
 Frame = +2

Query: 92   MKVCKPISTSMEMGVKLSLLDVGNFFCATVYWEAVGGALFKARHSICSLAYNQIYA*SRD 271
            MK C P+ T  E+G+KL+    G    AT+Y + VG  ++     + S   + +YA S  
Sbjct: 773  MKDCNPVLTPTELGLKLTKHGAGKMVNATLYKQIVGSLMY-----LTSTRPDIMYAVS-- 825

Query: 272  *ACSLTLRRCLCSTST*HRYAVKHMFRY 355
                  + R + + S  H  A K +FRY
Sbjct: 826  -----LISRYMENPSEVHLLAAKRIFRY 848


>tr|Q45W64|Q45W64_PHACH Polyprotein OS=Phanerochaete chrysosporium
            RP-78 GN=pol PE=4 SV=1
          Length = 1338

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 26/88 (29%), Positives = 38/88 (43%)
 Frame = +2

Query: 92   MKVCKPISTSMEMGVKLSLLDVGNFFCATVYWEAVGGALFKARHSICSLAYNQIYA*SRD 271
            M+ CKP+ST ++ GVKL             Y  A+G  ++ A  +   +A+         
Sbjct: 1090 MQDCKPVSTPLDPGVKLEPTPEDQTPADVPYAAAIGSLMYAATGTRPDIAF--------- 1140

Query: 272  *ACSLTLRRCLCSTST*HRYAVKHMFRY 355
                 TL +     S  H  AVKH+FRY
Sbjct: 1141 --AVQTLSQFTSRPSATHWTAVKHVFRY 1166


>tr|A5AD04|A5AD04_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_033522 PE=4 SV=1
          Length = 851

 Score = 29.6 bits (65), Expect(2) = 3.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 50  GCCIVSKLVY*DIAMKVCKPISTSMEMGVKL 142
           GC +  K    +I M  C+P++T +E G+KL
Sbjct: 648 GCMVPEKQCQKEIGMSGCQPVNTLIEKGLKL 678



 Score = 23.5 bits (49), Expect(2) = 3.2
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 183 IGRLLVVPCLRLDIQFVVWHITRFMHSRG 269
           +GRL+ +   R D+ + +  ++++MH+ G
Sbjct: 696 VGRLMYLAYTRPDLAYALSVVSQYMHNPG 724


>tr|Q9XG91|Q9XG91_PHAVU Tpv2-1c protein (Fragment) OS=Phaseolus
           vulgaris GN=Tpv2-1c PE=2 SV=1
          Length = 374

 Score = 30.0 bits (66), Expect(2) = 5.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 92  MKVCKPISTSMEMGVKLSLLDVGNFFCATVYWEAVG 199
           M+ C P+S  ME G KLS  D G    A+ Y   VG
Sbjct: 124 MENCNPVSIPMEPGAKLSKFDGGERVDASRYRSLVG 159



 Score = 22.3 bits (46), Expect(2) = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 183 IGRLLVVPCLRLDIQFVVWHITRFM 257
           +G L  + C R D+   V  I+RFM
Sbjct: 158 VGSLRYLTCTRPDLSLSVGTISRFM 182