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BP912670
Clone id YMU001_000021_E09
Library
Length 406
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTTCCATCCCAAGGCCCCAAAACCTTGGTGCCCCTTTCGGTATTTCTTTATATTGCTCGA
GCTTAGTACAACGGCCACATGTGATGTCCACACTCATCACCTTTGCTCTTCCTCCAACGT
CATGTTGATAAGTGTGGGAGTACTAGTGGCAGGGCAGGCTTTACCTTTCCCCTTCTTAGC
TACTTCGATCCATCTCTCAACGTCTTCCGCCCTTTTCTGTGTCTTTGTGATGACCTCCAC
CCTTGAAGCTGTCTTTTCTTTGTGTCGTTCTTCCTCTTCTTGAATAGCTGAAATTCTCCT
TCTTCAAGCTGGCATCCCATCTTGACTTTGAGGAGTTAAGTGACAGTTTTTTTAAGGAGA
GCAATCTTTTTGTAAAGGTGCTCCGCATATTCGGAGAAAAGCTGCT
■■Homology search results ■■ -
sp_hit_id Q9NDS0
Definition sp|Q9NDS0|TPM_BRABE Tropomyosin OS=Branchiostoma belcheri
Align length 46
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912670|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_E09.
         (406 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NDS0|TPM_BRABE Tropomyosin OS=Branchiostoma belcheri GN=TPM...    35   0.15 
sp|Q9R095|SPEF2_RAT Sperm flagellar protein 2 OS=Rattus norvegic...    33   0.33 
sp|P67937|TPM4_PIG Tropomyosin alpha-4 chain OS=Sus scrofa GN=TP...    32   0.74 
sp|P67936|TPM4_HUMAN Tropomyosin alpha-4 chain OS=Homo sapiens G...    32   0.74 
sp|P02561|TPM4_HORSE Tropomyosin alpha-4 chain OS=Equus caballus...    32   0.74 
sp|Q63610|TPM3_RAT Tropomyosin alpha-3 chain OS=Rattus norvegicu...    32   0.97 
sp|Q9U762|RS6_AEDAL 40S ribosomal protein S6 OS=Aedes albopictus...    32   0.97 
sp|P09495|TPM4_RAT Tropomyosin alpha-4 chain OS=Rattus norvegicu...    32   1.3  
sp|A1XQV4|TPM3_PIG Tropomyosin alpha-3 chain OS=Sus scrofa GN=TP...    32   1.3  
sp|P21107|TPM3_MOUSE Tropomyosin alpha-3 chain OS=Mus musculus G...    32   1.3  
sp|P06753|TPM3_HUMAN Tropomyosin alpha-3 chain OS=Homo sapiens G...    32   1.3  
sp|Q5KR47|TPM3_BOVIN Tropomyosin alpha-3 chain OS=Bos taurus GN=...    32   1.3  
sp|P58775|TPM2_RAT Tropomyosin beta chain OS=Rattus norvegicus G...    32   1.3  
sp|P58776|TPM2_RABIT Tropomyosin beta chain OS=Oryctolagus cunic...    32   1.3  
sp|P58774|TPM2_MOUSE Tropomyosin beta chain OS=Mus musculus GN=T...    32   1.3  
sp|P07951|TPM2_HUMAN Tropomyosin beta chain OS=Homo sapiens GN=T...    32   1.3  
sp|P19352|TPM2_CHICK Tropomyosin beta chain OS=Gallus gallus GN=...    32   1.3  
sp|Q5KR48|TPM2_BOVIN Tropomyosin beta chain OS=Bos taurus GN=TPM...    32   1.3  
sp|P04692|TPM1_RAT Tropomyosin alpha-1 chain OS=Rattus norvegicu...    32   1.3  
sp|P13105|TPM1_RANTE Tropomyosin alpha-1 chain OS=Rana temporari...    32   1.3  
sp|P58772|TPM1_RABIT Tropomyosin alpha-1 chain OS=Oryctolagus cu...    32   1.3  
sp|P42639|TPM1_PIG Tropomyosin alpha-1 chain OS=Sus scrofa GN=TP...    32   1.3  
sp|P58771|TPM1_MOUSE Tropomyosin alpha-1 chain OS=Mus musculus G...    32   1.3  
sp|P09493|TPM1_HUMAN Tropomyosin alpha-1 chain OS=Homo sapiens G...    32   1.3  
sp|P13104|TPM1_DANRE Tropomyosin alpha-1 chain OS=Danio rerio GN...    32   1.3  
sp|P58773|TPM1_COTJA Tropomyosin alpha-1 chain OS=Coturnix cotur...    32   1.3  
sp|P04268|TPM1_CHICK Tropomyosin alpha-1 chain OS=Gallus gallus ...    32   1.3  
sp|Q5KR49|TPM1_BOVIN Tropomyosin alpha-1 chain OS=Bos taurus GN=...    32   1.3  
sp|Q8WMW0|RHBG_PONPY Ammonium transporter Rh type B OS=Pongo pyg...    31   1.7  
sp|Q6IRU2|TPM4_MOUSE Tropomyosin alpha-4 chain OS=Mus musculus G...    31   2.2  

>sp|Q9NDS0|TPM_BRABE Tropomyosin OS=Branchiostoma belcheri GN=TPM
           PE=2 SV=1
          Length = 284

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = -2

Query: 300 RRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEVAKKGKG 163
           RRI  ++EE +R +E+  S VE +T ++K A++ ER  +V +  +G
Sbjct: 90  RRIQLVEEELDRAQERLNSTVEKLTDSEKAADESERARKVLENRQG 135


>sp|Q9R095|SPEF2_RAT Sperm flagellar protein 2 OS=Rattus norvegicus
            GN=Spef2 PE=2 SV=2
          Length = 1801

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
 Frame = -2

Query: 336  TPQSQDGMPA*RRRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEVAKKGKGKA 157
            +PQS     A + +  A +E+E+  KEK  ++ E     +K AE         KKGKGK+
Sbjct: 1250 SPQSGTNKKAKKEKEQAKKEKEQAKKEKEQAKKEKEPPKKKMAE---------KKGKGKS 1300

Query: 156  ------CPATSTP-TLINMTLEEEQR**VWTSHVAVVLSSSNIKKYR 37
                   P T TP  +  M  + E +  +   H+A + +     ++R
Sbjct: 1301 SPVVEVSPVTITPEEMAEMERKNELKLKIKEEHLAALQTEEQATQFR 1347


>sp|P67937|TPM4_PIG Tropomyosin alpha-4 chain OS=Sus scrofa GN=TPM4
           PE=1 SV=3
          Length = 248

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/50 (28%), Positives = 33/50 (66%)
 Frame = -2

Query: 330 QSQDGMPA*RRRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEV 181
           +++  + A  RRI  ++EE +R +E+ A+ ++ + + +K A++ ER ++V
Sbjct: 44  KAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKV 93


>sp|P67936|TPM4_HUMAN Tropomyosin alpha-4 chain OS=Homo sapiens
           GN=TPM4 PE=1 SV=3
          Length = 248

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/50 (28%), Positives = 33/50 (66%)
 Frame = -2

Query: 330 QSQDGMPA*RRRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEV 181
           +++  + A  RRI  ++EE +R +E+ A+ ++ + + +K A++ ER ++V
Sbjct: 44  KAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKV 93


>sp|P02561|TPM4_HORSE Tropomyosin alpha-4 chain OS=Equus caballus
           GN=TPM4 PE=1 SV=2
          Length = 248

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/50 (28%), Positives = 33/50 (66%)
 Frame = -2

Query: 330 QSQDGMPA*RRRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEV 181
           +++  + A  RRI  ++EE +R +E+ A+ ++ + + +K A++ ER ++V
Sbjct: 44  KAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKV 93


>sp|Q63610|TPM3_RAT Tropomyosin alpha-3 chain OS=Rattus norvegicus
           GN=Tpm3 PE=1 SV=2
          Length = 248

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 14/50 (28%), Positives = 33/50 (66%)
 Frame = -2

Query: 330 QSQDGMPA*RRRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEV 181
           Q++  + +  RRI  ++EE +R +E+ A+ ++ + + +K A++ ER ++V
Sbjct: 44  QAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKV 93


>sp|Q9U762|RS6_AEDAL 40S ribosomal protein S6 OS=Aedes albopictus
           GN=RpS6 PE=2 SV=1
          Length = 349

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 291 SAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEVAKKGKGKACPATSTP 136
           S+I EE ++ KEK A +       ++  ++V++  E AKK   KA  A   P
Sbjct: 237 SSIGEERDKEKEKAAVKAAKKVAKKEAKKEVKKVTEAAKKADAKAAKAKVEP 288


>sp|P09495|TPM4_RAT Tropomyosin alpha-4 chain OS=Rattus norvegicus
           GN=Tpm4 PE=1 SV=3
          Length = 248

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/40 (32%), Positives = 28/40 (70%)
 Frame = -2

Query: 300 RRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEV 181
           RRI  ++EE +R +E+ A+ ++ + + +K A++ ER ++V
Sbjct: 54  RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKV 93


>sp|A1XQV4|TPM3_PIG Tropomyosin alpha-3 chain OS=Sus scrofa GN=TPM3
           PE=2 SV=1
          Length = 284

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/40 (32%), Positives = 28/40 (70%)
 Frame = -2

Query: 300 RRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEV 181
           RRI  ++EE +R +E+ A+ ++ + + +K A++ ER ++V
Sbjct: 90  RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKV 129


>sp|P21107|TPM3_MOUSE Tropomyosin alpha-3 chain OS=Mus musculus
           GN=Tpm3 PE=1 SV=2
          Length = 284

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/40 (32%), Positives = 28/40 (70%)
 Frame = -2

Query: 300 RRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEV 181
           RRI  ++EE +R +E+ A+ ++ + + +K A++ ER ++V
Sbjct: 90  RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKV 129
tr_hit_id Q3TJ53
Definition tr|Q3TJ53|Q3TJ53_MOUSE Putative uncharacterized protein OS=Mus musculus
Align length 61
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912670|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_E09.
         (406 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3TJ53|Q3TJ53_MOUSE Putative uncharacterized protein OS=Mus m...    37   0.38 
tr|A7TM21|A7TM21_VANPO Putative uncharacterized protein OS=Vande...    37   0.38 
tr|Q6C1W6|Q6C1W6_YARLI YALI0F12837p OS=Yarrowia lipolytica GN=YA...    35   1.4  
tr|Q5B2M2|Q5B2M2_EMENI Putative uncharacterized protein OS=Emeri...    35   1.9  
tr|Q7SXW1|Q7SXW1_DANRE Zgc:63734 OS=Danio rerio GN=zgc:63734 PE=...    34   3.2  
tr|Q4D6S8|Q4D6S8_TRYCR Putative uncharacterized protein OS=Trypa...    34   3.2  
tr|B4DTK3|B4DTK3_HUMAN cDNA FLJ57891, highly similar to Tropomyo...    34   3.2  
tr|A9S168|A9S168_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.5  
tr|B3M6D9|B3M6D9_DROAN GF10683 OS=Drosophila ananassae GN=GF1068...    33   5.5  
tr|Q4F8N9|Q4F8N9_HYLCH Tropomyosin 4 (Fragment) OS=Hyla chrysosc...    33   7.2  
tr|B5XDJ4|B5XDJ4_SALSA Tropomyosin alpha-3 chain OS=Salmo salar ...    33   7.2  
tr|B6N325|B6N325_BRAFL Putative uncharacterized protein OS=Branc...    33   7.2  
tr|B6MLR8|B6MLR8_BRAFL Putative uncharacterized protein OS=Branc...    33   7.2  
tr|Q8ILR0|Q8ILR0_PLAF7 Putative uncharacterized protein OS=Plasm...    33   9.4  

>tr|Q3TJ53|Q3TJ53_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Tpm3 PE=2 SV=1
          Length = 248

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
 Frame = -2

Query: 330 QSQDGMPA*RRRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEV----AKKGKG 163
           Q++ G+ +  RRI  ++EE +R +E+ A+ ++ + + +K A++ ER I+V    A K +G
Sbjct: 44  QAEAGVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGIKVIENRALKDEG 103

Query: 162 K 160
           K
Sbjct: 104 K 104


>tr|A7TM21|A7TM21_VANPO Putative uncharacterized protein
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=Kpol_1052p10 PE=4 SV=1
          Length = 641

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
 Frame = -2

Query: 318 GMPA*RRRISAIQ-EEEERHKEKTASRV----EVITKTQKRAEDVERWIEVAKKGKGKAC 154
           GMP  R  +  I  EEEER K +    +    EV+ + Q+  +++++  +  K+G+GK  
Sbjct: 541 GMPLSREEVEKINLEEEEREKAEVEQAIRKELEVVKERQQMDKEIQQAKKDMKRGEGKIL 600

Query: 153 PATSTPTLINM-TLEEEQR 100
            A+S     N+ +L E+QR
Sbjct: 601 DASSISNAQNLNSLSEDQR 619


>tr|Q6C1W6|Q6C1W6_YARLI YALI0F12837p OS=Yarrowia lipolytica
           GN=YALI0F12837g PE=4 SV=1
          Length = 1229

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = -2

Query: 297 RISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEVAKKGKGKACPATSTPTLINMT 118
           R++A++ E E  +EK + R EV+ + +K   D ER  E   K + +A  A          
Sbjct: 313 RVAALEAELEAEREKESKRQEVVRQAEKERLDAEREAEYQSKLEARAKEAEKA-----RQ 367

Query: 117 LEEEQR 100
            EEEQR
Sbjct: 368 AEEEQR 373


>tr|Q5B2M2|Q5B2M2_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN5208.2 PE=4 SV=1
          Length = 779

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
 Frame = -2

Query: 393 RICGAPLQK-DCSP*KNCHLTPQSQDGMPA*RRRISAIQEEEE-----RHKEKTASRVEV 232
           R+  +P+ +   SP K  H TP  Q      +RRI  I    E     R K   A   + 
Sbjct: 117 RLTDSPIPRASTSPEKVLHFTPLRQLLDTRTQRRIRRIGLSNEINNLEREKRAAAQYEKS 176

Query: 231 ITKTQKRAEDVERWIEVAKKGKGKACPAT 145
           +    +  + ++R +EVAKKG+  A PAT
Sbjct: 177 LESLLRERDSLKRELEVAKKGRVSATPAT 205


>tr|Q7SXW1|Q7SXW1_DANRE Zgc:63734 OS=Danio rerio GN=zgc:63734 PE=2
           SV=1
          Length = 248

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/53 (30%), Positives = 34/53 (64%)
 Frame = -2

Query: 339 LTPQSQDGMPA*RRRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEV 181
           L  +++  + A  RRI  ++EE +R +E+ A+ ++ + + +K A++ ER I+V
Sbjct: 41  LREKAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGIKV 93


>tr|Q4D6S8|Q4D6S8_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053503847.30 PE=4 SV=1
          Length = 456

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 240 VEVITKTQKRAEDVERWIEVAKKGKGKACPATSTPTLINMTLEEEQR 100
           ++V+ +   RAED +  +EV  +     CP T TPT  + T   E+R
Sbjct: 231 IDVLLRANGRAEDRQHLLEVQLQTMELLCPTTPTPTAPSPTFSREER 277


>tr|B4DTK3|B4DTK3_HUMAN cDNA FLJ57891, highly similar to Tropomyosin
           beta chain OS=Homo sapiens PE=2 SV=1
          Length = 158

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/37 (35%), Positives = 26/37 (70%)
 Frame = -2

Query: 300 RRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERW 190
           RRI  ++EE +R +E+ A+ ++ + + +K A++ ERW
Sbjct: 90  RRIQLVEEELDRAQERLAAALQKLEEAEKAADESERW 126


>tr|A9S168|A9S168_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162223 PE=4 SV=1
          Length = 311

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = -2

Query: 330 QSQDGMPA*RRRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERW 190
           + QD   A RR+  A +EEEER KE+ A+R +   + Q   E+ E+W
Sbjct: 123 EKQDRYEAMRRKKDAEREEEERRKEE-AAREQKAREEQAANEEFEKW 168


>tr|B3M6D9|B3M6D9_DROAN GF10683 OS=Drosophila ananassae GN=GF10683
           PE=4 SV=1
          Length = 82

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
 Frame = -2

Query: 345 CHLTPQSQDGMPA*RRRISAIQEEEERHKEKTASR----VEVITKTQKRAEDVE-RWIEV 181
           C  + +  + MP+   R     E  E+ +++  SR    VE + + Q+RAED+E R  E 
Sbjct: 8   CGQSAEETNLMPSQEERRQQQLEAAEKRRQENESRGIKNVESVRRQQQRAEDLERREEEA 67

Query: 180 AKKGKGKA 157
           A++G+G+A
Sbjct: 68  ARQGQGQA 75


>tr|Q4F8N9|Q4F8N9_HYLCH Tropomyosin 4 (Fragment) OS=Hyla
           chrysoscelis PE=2 SV=1
          Length = 282

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/40 (35%), Positives = 28/40 (70%)
 Frame = -2

Query: 300 RRISAIQEEEERHKEKTASRVEVITKTQKRAEDVERWIEV 181
           RRI  ++EE +R +E+ A+ ++ + + +K A++ ER +EV
Sbjct: 88  RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMEV 127