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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912673
Clone id YMU001_000021_E12
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATGAAGGCAGCTGCAAAGAGGGCTGCAGGCTCTAAGGGAAGGAAAATGAAAGCAAGTCA
AGCTGAACAAACTCAAGGTGTGGCTATTCGTGGAAGAGGGAGGGGTAGAGGAGGAATAAA
ATCAACAAGTGGGCGGGCAAAAGCTTCCAATAGATCTGACTTGAGGCTCTCAGCAGAGGC
CTCCTTGAGTGATAGGAGCTCAAGTGAGGACATCTCAGCTTTGGACCAGACCAAACGGAT
GGACGAAGTTGATAGTGCTGTTCGTCGACGTTCTAATCGTCTTCCTCAGAGAGCAATCTA
CAATTTTTCGGGTTCAGAAGAGGACATGGAAGACGGTCAACTTGAGAAGTTGAAGGCAGG
AGGCAGCCCTGATTGTGTTAATAGAATCGCCCCATCAGACGTCAACGGTGCTGAAGAATC
TTCTGTATTTTCAAGTAGCAAAGTTTTAGAGGCAGAGAGGAATGGAGATCGTGGGGAGAC
AGGAGTTACAAGTGTCGAGGGACAGTATGGA
■■Homology search results ■■ -
sp_hit_id Q8TFG4
Definition sp|Q8TFG4|YL54_SCHPO Uncharacterized protein PB18E9.04c OS=Schizosaccharomyces pombe
Align length 56
Score (bit) 30.8
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912673|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_E12.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TFG4|YL54_SCHPO Uncharacterized protein PB18E9.04c OS=Schiz...    31   3.8  
sp|Q5RAX0|PAF1_PONAB RNA polymerase II-associated factor 1 homol...    31   3.8  
sp|Q8N7H5|PAF1_HUMAN RNA polymerase II-associated factor 1 homol...    31   3.8  
sp|Q8K2T8|PAF1_MOUSE RNA polymerase II-associated factor 1 homol...    30   6.5  
sp|Q6ZKB2|FH9_ORYSJ Formin-like protein 9 OS=Oryza sativa subsp....    30   6.5  
sp|A2YVG8|FH9_ORYSI Formin-like protein 9 OS=Oryza sativa subsp....    30   6.5  
sp|Q9I3F5|ACON1_PSEAE Aconitate hydratase 1 OS=Pseudomonas aerug...    30   6.5  
sp|Q4V886|PAF1_RAT RNA polymerase II-associated factor 1 homolog...    30   8.5  

>sp|Q8TFG4|YL54_SCHPO Uncharacterized protein PB18E9.04c
           OS=Schizosaccharomyces pombe GN=SPAPB18E9.04c PE=2 SV=1
          Length = 800

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -2

Query: 498 STLVTPVSPRSPFLSASKTLL------LENTEDSSAPLTSDGAILLTQSGLPPAFN 349
           S+L TP++P  P  S S T +        +T+ +S+PL +      T + +PP  N
Sbjct: 241 SSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGN 296


>sp|Q5RAX0|PAF1_PONAB RNA polymerase II-associated factor 1 homolog
           OS=Pongo abelii GN=PAF1 PE=2 SV=1
          Length = 533

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +2

Query: 302 NFSGSEEDMEDGQLEKLKAGGSPDCVNRIAPSDVNGAEESSVFSSSKVLEAERNGDRGET 481
           N    EE+ E+ + E+ +AGGS +   + + S+  G+E+    S S+       GDR E 
Sbjct: 373 NHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDERSGSESE----REEGDRDEA 428

Query: 482 GVTSVEGQ 505
              S  G+
Sbjct: 429 SDKSGSGE 436


>sp|Q8N7H5|PAF1_HUMAN RNA polymerase II-associated factor 1 homolog
           OS=Homo sapiens GN=PAF1 PE=1 SV=2
          Length = 531

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +2

Query: 302 NFSGSEEDMEDGQLEKLKAGGSPDCVNRIAPSDVNGAEESSVFSSSKVLEAERNGDRGET 481
           N    EE+ E+ + E+ +AGGS +   + + S+  G+E+    S S+       GDR E 
Sbjct: 373 NHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESE----REEGDRDEA 428

Query: 482 GVTSVEGQ 505
              S  G+
Sbjct: 429 SDKSGSGE 436


>sp|Q8K2T8|PAF1_MOUSE RNA polymerase II-associated factor 1 homolog
           OS=Mus musculus GN=Paf1 PE=2 SV=1
          Length = 535

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +2

Query: 302 NFSGSEEDMEDGQLEKLKAGGSPDCVNRIAPSDVNGAEESSVFSSSKVLEAERNGDRGET 481
           N    EE+ E+ + E+ +AGGS +   + + S+  G+E+    S S        GDR E 
Sbjct: 373 NHEPEEEEEEEMEAEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESD----REEGDRDEA 428

Query: 482 GVTSVEGQ 505
              S  G+
Sbjct: 429 SDKSGSGE 436


>sp|Q6ZKB2|FH9_ORYSJ Formin-like protein 9 OS=Oryza sativa subsp.
           japonica GN=FH9 PE=3 SV=1
          Length = 882

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +2

Query: 287 QRAIYNFSGSEEDMEDGQLEKLKAGGSPDCVNRIAPSDVNGAEESSVFSSSKVLEAERNG 466
           +RAI N S       D   +      SPDC +R++P D      S +   SK    + +G
Sbjct: 280 RRAIMNRSEYFLQTHDSPSDSSYQSLSPDCTSRLSPKDQTFTASSHLSLRSKTCPEKSDG 339

Query: 467 DRGE 478
           +  E
Sbjct: 340 ENAE 343


>sp|A2YVG8|FH9_ORYSI Formin-like protein 9 OS=Oryza sativa subsp.
           indica GN=FH9 PE=2 SV=1
          Length = 884

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +2

Query: 287 QRAIYNFSGSEEDMEDGQLEKLKAGGSPDCVNRIAPSDVNGAEESSVFSSSKVLEAERNG 466
           +RAI N S       D   +      SPDC +R++P D      S +   SK    + +G
Sbjct: 282 RRAIMNRSEYFLQTHDSPSDSSYQSLSPDCTSRLSPKDQTFTASSHLSLRSKTCPEKSDG 341

Query: 467 DRGE 478
           +  E
Sbjct: 342 ENAE 345


>sp|Q9I3F5|ACON1_PSEAE Aconitate hydratase 1 OS=Pseudomonas
           aeruginosa GN=acnA PE=3 SV=1
          Length = 910

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = +2

Query: 353 KAGGSPDCVNRIAPSD--------VNGAEESSVFSSSKVLEAERNGDR 472
           KAGG P  +N ++P D        V+     S F  +  +E +RNG+R
Sbjct: 109 KAGGDPQKINPLSPVDLVIDHSVMVDKFASESAFEQNVEIEMQRNGER 156


>sp|Q4V886|PAF1_RAT RNA polymerase II-associated factor 1 homolog
           OS=Rattus norvegicus GN=Paf1 PE=2 SV=1
          Length = 535

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +2

Query: 302 NFSGSEEDMEDGQLEKLKAGGSPDCVNRIAPSDVNGAEESSVFSSSKVLEAERNGDRGET 481
           N    EE+ E+ + E+ +AGGS +   + + S+  G+E+    S S        GDR E 
Sbjct: 373 NHEPEEEEEEEMEAEEKEAGGSDEEHEKGSSSEKEGSEDERSGSESD----REEGDRDEA 428

Query: 482 GVTSVEGQ 505
              S  G+
Sbjct: 429 SDKSGSGE 436
tr_hit_id B1JEJ3
Definition tr|B1JEJ3|B1JEJ3_PSEPW Putative uncharacterized protein OS=Pseudomonas putida (strain W619)
Align length 64
Score (bit) 33.1
E-value 8.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912673|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_E12.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1JEJ3|B1JEJ3_PSEPW Putative uncharacterized protein OS=Pseud...    33   8.1  

>tr|B1JEJ3|B1JEJ3_PSEPW Putative uncharacterized protein
            OS=Pseudomonas putida (strain W619) GN=PputW619_4380 PE=4
            SV=1
          Length = 3923

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 323  DMEDGQLEKLKAGGSPDCVNRIAPSDVNGAEESSVFSSSKVLEAERNGDRGETG-VTSVE 499
            D+E   L +    G+P   N I    V+G  ++    SS VL+  +NG     G  T V+
Sbjct: 3362 DIETSSLTEFTGTGTPTTGNVITDPGVDGTTDARGPDSSAVLQVLKNGSYVTAGSATEVQ 3421

Query: 500  GQYG 511
            G YG
Sbjct: 3422 GLYG 3425