BP912677 |
Clone id |
YMU001_000021_F04 |
Library |
YMU01 |
Length |
506 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000021_F04. |
Accession |
BP912677 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1643Contig1 |
Sequence |
CTATGGAAGAAAGTACAACTGAGAGGAAAAAGGAGAGAATGTGACAGCTTCAATGAAGCT TTGAGAACAGATCTTGTCTTCTTCAAGGATGGGAAGATTCACTTAAGGGAGACAGATTTA CCCTTAAGGACTAACTTTGGGAAAGGAGAAATGCAGAGTCTGGTAGAGGATATGGCCACT ACCCATGCCATCTCTGCATCTGAGGCATCTACTTATACAATCAATATTGAACCATTGAGG AGTTTTGAAGAAAATGGTAAGTTGTGGCCAAGTGCTATGGAGCTAGCAAGGAAAGGAAAG CTTACAAGAGAAGTCCTACATGAAGCAGGTGACTGTATTCGTCTAGAAAAAGGATGGAAT AATCCTGTGGACTCCTTGTCAGTGCATGCCTATATTGCAAAATGTCAAAACAACGAAGTT TCTGTGGAAGAAAAGCGCAAGCGAGAGAGTGGTGATGAAGGACCATCATAAAGAATTACT ATAAGAAGCGATACAATACCTCCTCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8FPB3 |
Definition |
sp|Q8FPB3|TRUB_COREF tRNA pseudouridine synthase B OS=Corynebacterium efficiens |
Align length |
119 |
Score (bit) |
33.9 |
E-value |
0.45 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TC30 |
Definition |
tr|A9TC30|A9TC30_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
157 |
Score (bit) |
128.0 |
E-value |
1.0e-28 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912677|Adiantum capillus-veneris mRNA, clone: YMU001_000021_F04. (506 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TC30|A9TC30_PHYPA Predicted protein OS=Physcomitrella paten... 128 1e-28 tr|A9RID4|A9RID4_PHYPA Predicted protein OS=Physcomitrella paten... 124 3e-27 tr|A9S3S2|A9S3S2_PHYPA Predicted protein OS=Physcomitrella paten... 117 3e-25 tr|A9RD60|A9RD60_PHYPA Predicted protein OS=Physcomitrella paten... 115 9e-25 tr|A9U2E1|A9U2E1_PHYPA Predicted protein OS=Physcomitrella paten... 115 1e-24 tr|A9T8S7|A9T8S7_PHYPA Predicted protein OS=Physcomitrella paten... 115 2e-24 tr|A9T403|A9T403_PHYPA Predicted protein OS=Physcomitrella paten... 115 2e-24 tr|A9ST07|A9ST07_PHYPA Predicted protein OS=Physcomitrella paten... 115 2e-24 tr|A9U600|A9U600_PHYPA Predicted protein (Fragment) OS=Physcomit... 114 2e-24 tr|A9U5P9|A9U5P9_PHYPA Predicted protein (Fragment) OS=Physcomit... 114 2e-24 tr|A9TCZ6|A9TCZ6_PHYPA Predicted protein OS=Physcomitrella paten... 114 2e-24 tr|A9STQ8|A9STQ8_PHYPA Predicted protein OS=Physcomitrella paten... 114 2e-24 tr|A9U5L6|A9U5L6_PHYPA Predicted protein OS=Physcomitrella paten... 114 3e-24 tr|A9TXZ9|A9TXZ9_PHYPA Predicted protein OS=Physcomitrella paten... 114 3e-24 tr|A9RTQ9|A9RTQ9_PHYPA Predicted protein OS=Physcomitrella paten... 114 3e-24 tr|A9U1B4|A9U1B4_PHYPA Predicted protein OS=Physcomitrella paten... 114 3e-24 tr|A9TSB6|A9TSB6_PHYPA Predicted protein OS=Physcomitrella paten... 114 3e-24 tr|A9TFR1|A9TFR1_PHYPA Predicted protein OS=Physcomitrella paten... 114 3e-24 tr|A9T8D7|A9T8D7_PHYPA Predicted protein OS=Physcomitrella paten... 114 3e-24 tr|A9S2J2|A9S2J2_PHYPA Predicted protein OS=Physcomitrella paten... 114 3e-24 tr|A9RRW4|A9RRW4_PHYPA Predicted protein OS=Physcomitrella paten... 114 3e-24 tr|A9TK13|A9TK13_PHYPA Predicted protein OS=Physcomitrella paten... 113 5e-24 tr|A9TK11|A9TK11_PHYPA Predicted protein OS=Physcomitrella paten... 113 5e-24 tr|A9TA96|A9TA96_PHYPA Predicted protein OS=Physcomitrella paten... 113 5e-24 tr|A9S1U2|A9S1U2_PHYPA Predicted protein OS=Physcomitrella paten... 113 5e-24 tr|A9TWC7|A9TWC7_PHYPA Predicted protein OS=Physcomitrella paten... 113 6e-24 tr|A9TFQ9|A9TFQ9_PHYPA Predicted protein OS=Physcomitrella paten... 113 6e-24 tr|A9SWA0|A9SWA0_PHYPA Predicted protein OS=Physcomitrella paten... 113 6e-24 tr|A9SPU7|A9SPU7_PHYPA Predicted protein OS=Physcomitrella paten... 113 6e-24 tr|A9S523|A9S523_PHYPA Predicted protein OS=Physcomitrella paten... 113 6e-24
>tr|A9TC30|A9TC30_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_90813 PE=4 SV=1 Length = 423
Score = 128 bits (322), Expect = 1e-28 Identities = 72/157 (45%), Positives = 93/157 (59%), Gaps = 7/157 (4%) Frame = +1
Query: 31 RRECDSFNEALRTDLVFFKDGKIHLRETDLPLRTNFGKGEMQSLVEDMATTHAISASEAS 210 RREC+ F EAL +VFFKDG +H +E L TNFGKG M+ + D IS++EAS Sbjct: 229 RRECEEFTEALCKGVVFFKDGMMHSKENGEKLETNFGKGGMKLFIGDTFKVQTISSNEAS 288
Query: 211 TYTINIEPLRSFE-------ENGKLWPSAMELARKGKLTREVLHEAGDCIRLEKGWNNPV 369 TY + + R E+ LW SAM + TR+ L G+ IR GW++PV Sbjct: 289 TYWVEADTRRCLSINLEFPIESSSLWTSAMRYIERRNFTRDDLKHVGNNIRKIIGWDDPV 348
Query: 370 DSLSVHAYIAKCQNNEVSVEEKRKRESGDEGPS*RIT 480 D LSVHA+IA+ Q +E VEEKR+R +EGPS RIT Sbjct: 349 DRLSVHAHIARNQ-HEALVEEKRRRNENNEGPSKRIT 384
>tr|A9RID4|A9RID4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_66531 PE=4 SV=1 Length = 396
Score = 124 bits (310), Expect = 3e-27 Identities = 66/157 (42%), Positives = 91/157 (57%), Gaps = 7/157 (4%) Frame = +1
Query: 31 RRECDSFNEALRTDLVFFKDGKIHLRETDLPLRTNFGKGEMQSLVEDMATTHAISASEAS 210 R+EC+ F EAL VF KDG +H +E L NFGKG ++ + D IS++EAS Sbjct: 18 RKECEEFTEALHKGFVFLKDGMLHSKENGEKLEINFGKGRIKLFIGDTFKVQTISSNEAS 77
Query: 211 TYTINIEPLRSFE-------ENGKLWPSAMELARKGKLTREVLHEAGDCIRLEKGWNNPV 369 TY + +P R E+ LW SAM A + R+ L G+ IR GW+NPV Sbjct: 78 TYWVEADPSRYLSINLEFPVESSSLWISAMRYAERRNFIRDDLKRIGNNIRQITGWDNPV 137
Query: 370 DSLSVHAYIAKCQNNEVSVEEKRKRESGDEGPS*RIT 480 + LSVH +IA+ Q +E +EEKR+++ +EGPS RIT Sbjct: 138 ERLSVHVHIARSQ-HEALIEEKRRKDENNEGPSKRIT 173
>tr|A9S3S2|A9S3S2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_74185 PE=4 SV=1 Length = 614
Score = 117 bits (293), Expect = 3e-25 Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 3/157 (1%) Frame = +1
Query: 31 RRECDSFNEALRTDLVFFKDGKIHLRETDLPLRTNFGKGEMQSLVEDMATTHAISASEAS 210 R++C+ FN +R ++ +KDGKI L++ + L+TNFGKG M++LV+D H A E++ Sbjct: 254 RKDCNEFNNMIRQGIICWKDGKIILKDREDLLQTNFGKGGMRALVQDYLKGHETVARESA 313
Query: 211 TYTINI-EPLRSFEENGKLWPSAMELARKGKLTREVLHEAGDCIRLEKGWNNPVDSLSVH 387 +Y I + + + E + W SA+ ++GKL RE L IR GW +PV+SLSVH Sbjct: 314 SYGIRVDDEIGGSTETSEFWASAVSTMQEGKLPREALLRTAATIRGRTGWEDPVESLSVH 373
Query: 388 AYIAKCQNNEVSVEEKRKRESGD--EGPS*RITIRSD 492 AYIAK Q +E +EEKR+R D EG S + R D Sbjct: 374 AYIAKSQ-HEALMEEKRRRNFDDTREGNSFKRQTRGD 409
>tr|A9RD60|A9RD60_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_64344 PE=4 SV=1 Length = 709
Score = 115 bits (289), Expect = 9e-25 Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 3/157 (1%) Frame = +1
Query: 31 RRECDSFNEALRTDLVFFKDGKIHLRETDLPLRTNFGKGEMQSLVEDMATTHAISASEAS 210 R++C+ FN +R ++ +KDGKI L++ + L+TNFGKG M++LV+D H A E++ Sbjct: 51 RKDCNEFNNMIRQGIICWKDGKIALKDREDLLQTNFGKGGMRALVQDYLKEHETVARESA 110
Query: 211 TYTINI-EPLRSFEENGKLWPSAMELARKGKLTREVLHEAGDCIRLEKGWNNPVDSLSVH 387 +Y + + + E + W SA+ ++GKL RE L IR W +PV+SLSVH Sbjct: 111 SYGARVDDEIGGSTETSEFWASAVSTMQEGKLPREALLRTAATIRGRTDWEDPVESLSVH 170
Query: 388 AYIAKCQNNEVSVEEKRKRESGD--EGPS*RITIRSD 492 AYIAK Q +E +EEKR+R S D EG S + R D Sbjct: 171 AYIAKSQ-HEALMEEKRRRNSDDTREGNSFKRQTRGD 206
>tr|A9U2E1|A9U2E1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_100772 PE=4 SV=1 Length = 697
Score = 115 bits (288), Expect = 1e-24 Identities = 65/157 (41%), Positives = 94/157 (59%), Gaps = 3/157 (1%) Frame = +1
Query: 31 RRECDSFNEALRTDLVFFKDGKIHLRETDLPLRTNFGKGEMQSLVEDMATTHAISASEAS 210 R++C+ FN +R ++ +KDG I L++ D L+TNFGKG M++LV+D H A E++ Sbjct: 231 RKDCNEFNNMIRQGIICWKDGTIALKDRDDLLQTNFGKGGMRALVQDYLKRHETVARESA 290
Query: 211 TYTINIEP-LRSFEENGKLWPSAMELARKGKLTREVLHEAGDCIRLEKGWNNPVDSLSVH 387 +Y ++ + E + W SA+ ++GKL RE L IR GW +PV+SLSVH Sbjct: 291 SYGARVDDEIGGSTETSEFWASAVSTMQEGKLPREALLRTAATIRGRTGWEDPVESLSVH 350
Query: 388 AYIAKCQNNEVSVEEKRKRESGD--EGPS*RITIRSD 492 AYIAK Q +E +EEKR+R D EG S + R D Sbjct: 351 AYIAKSQ-HEALMEEKRRRNFDDTREGNSFKRQTRGD 386
>tr|A9T8S7|A9T8S7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_89583 PE=4 SV=1 Length = 956
Score = 115 bits (287), Expect = 2e-24 Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 3/157 (1%) Frame = +1
Query: 31 RRECDSFNEALRTDLVFFKDGKIHLRETDLPLRTNFGKGEMQSLVEDMATTHAISASEAS 210 R++C+ FN +R ++ +KDGKI L++ + L+TNFGKG +++LV+D H +A E++ Sbjct: 276 RKDCNEFNNMIRQGIICWKDGKIALKDREDLLQTNFGKGRIRALVQDYLKEHETAARESA 335
Query: 211 TYTINI-EPLRSFEENGKLWPSAMELARKGKLTREVLHEAGDCIRLEKGWNNPVDSLSVH 387 +Y + + L + + W SA+ ++GKL REVL + IR GW +PVDSLSVH Sbjct: 336 SYGARVDDDLGGSTKTREFWASAISTMQEGKLPREVLLKTAAIIRGITGWEDPVDSLSVH 395
Query: 388 AYIAKCQNNEVSVEEKRKRESGD--EGPS*RITIRSD 492 AYIAK Q +E +EEKR+ D EG S + R D Sbjct: 396 AYIAKSQ-HEALMEEKRRGNFNDTREGNSFKRQTRGD 431
>tr|A9T403|A9T403_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_87780 PE=4 SV=1 Length = 783
Score = 115 bits (287), Expect = 2e-24 Identities = 65/157 (41%), Positives = 94/157 (59%), Gaps = 3/157 (1%) Frame = +1
Query: 31 RRECDSFNEALRTDLVFFKDGKIHLRETDLPLRTNFGKGEMQSLVEDMATTHAISASEAS 210 R++C+ FN +R ++ +KDGKI L++ L+TNFGKG M++LV+D H I A E++ Sbjct: 214 RKDCNEFNNMIRQGIICWKDGKIALKDRKNLLQTNFGKGGMRALVQDYLKEHVIVARESA 273
Query: 211 TYTINI-EPLRSFEENGKLWPSAMELARKGKLTREVLHEAGDCIRLEKGWNNPVDSLSVH 387 +Y + + + E + W SA+ ++GKL RE L IR GW +PV+SLSVH Sbjct: 274 SYGARVDDEIGGSTETSEFWASAVSTMQEGKLPREALLRTAATIRGRTGWEDPVESLSVH 333
Query: 388 AYIAKCQNNEVSVEEKRKRESGD--EGPS*RITIRSD 492 AYIAK Q +E +EEKR+ D EG S + R D Sbjct: 334 AYIAKSQ-HEALMEEKRRGNFDDTREGNSFKKQTRGD 369
>tr|A9ST07|A9ST07_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_83605 PE=4 SV=1 Length = 548
Score = 115 bits (287), Expect = 2e-24 Identities = 64/157 (40%), Positives = 95/157 (60%), Gaps = 3/157 (1%) Frame = +1
Query: 31 RRECDSFNEALRTDLVFFKDGKIHLRETDLPLRTNFGKGEMQSLVEDMATTHAISASEAS 210 R++C+ FN +R ++ +KDGKI L++ + L+TNFGKG M++LV+D H +A E++ Sbjct: 309 RKDCNEFNNMIRQGIICWKDGKIALKDREDLLQTNFGKGRMRALVQDYLKEHETAAREST 368
Query: 211 TYTINI-EPLRSFEENGKLWPSAMELARKGKLTREVLHEAGDCIRLEKGWNNPVDSLSVH 387 +Y + + L + + W SA+ ++GKL RE L IR GW +PV+SLSVH Sbjct: 369 SYGARVDDDLGRNMKTSEFWASAISTMQEGKLPREALLRTAATIRGRTGWEDPVESLSVH 428
Query: 388 AYIAKCQNNEVSVEEKRKRESGD--EGPS*RITIRSD 492 AYIAK Q +E +EEKR+ D EG S + R D Sbjct: 429 AYIAKSQ-HEALIEEKRRENFDDTREGNSSKRQTRGD 464
>tr|A9U600|A9U600_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_102913 PE=4 SV=1 Length = 649
Score = 114 bits (286), Expect = 2e-24 Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 3/157 (1%) Frame = +1
Query: 31 RRECDSFNEALRTDLVFFKDGKIHLRETDLPLRTNFGKGEMQSLVEDMATTHAISASEAS 210 R++C+ FN +R ++ +KDGKI L+ + L+TNFGKG M++LV+D H I A E++ Sbjct: 239 RKDCNEFNNMIRQGIICWKDGKIALKNREDLLQTNFGKGGMRALVQDYLKEHEIVARESA 298
Query: 211 TYTINI-EPLRSFEENGKLWPSAMELARKGKLTREVLHEAGDCIRLEKGWNNPVDSLSVH 387 +Y + + + + + W SA+ ++GKL REVL IR GW +PV+SLSVH Sbjct: 299 SYGARVDDEIGGSTKTSEFWASAVSTMQEGKLPREVLLRTAATIRGRTGWEDPVESLSVH 358
Query: 388 AYIAKCQNNEVSVEEKRKRESGD--EGPS*RITIRSD 492 AYIAK Q +E +EEKR+ D EG S + R D Sbjct: 359 AYIAKSQ-HEALMEEKRRGNFDDTREGNSFKRQTRGD 394
>tr|A9U5P9|A9U5P9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_102783 PE=4 SV=1 Length = 519
Score = 114 bits (286), Expect = 2e-24 Identities = 63/157 (40%), Positives = 95/157 (60%), Gaps = 3/157 (1%) Frame = +1
Query: 31 RRECDSFNEALRTDLVFFKDGKIHLRETDLPLRTNFGKGEMQSLVEDMATTHAISASEAS 210 R++C+ FN +R ++ +KDGKI L++ + L+TNFGKGEM++LV+D H E++ Sbjct: 252 RKDCNEFNNMIRQGIICWKDGKIALKDREDLLQTNFGKGEMRALVQDYLKEHETVVRESA 311
Query: 211 TYTINI-EPLRSFEENGKLWPSAMELARKGKLTREVLHEAGDCIRLEKGWNNPVDSLSVH 387 +Y + + + + E + W SA+ ++GKL +E L IR GW +PV+SLSVH Sbjct: 312 SYGVRVDDAIGGSTETSEFWASAVSTMQEGKLPQEALLRTAATIRGRTGWEDPVESLSVH 371
Query: 388 AYIAKCQNNEVSVEEKRKRESGD--EGPS*RITIRSD 492 AYIAK Q +E +EEKR+ D EG S + R D Sbjct: 372 AYIAKSQ-HEALMEEKRRGNFDDTREGNSFKRQTRGD 407
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