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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912693
Clone id YMU001_000021_G09
Library
Length 456
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGAGAGAGAGAGGGGATTTTCTTTGGCTGCAGCAATGCGCAAATCACATAC
TAATATATATAGTGAGCAAGCTTAGAAAGTGTGACCATAAAATGCACTTTAACATGTCAA
GGAAGAACCATAAAGTTTATAACATTTATCTATGTGTCACCTGTGTGGGGATCTCACAAA
GCCTACCATAGGTGCATCTCTAGCTAGTTGCAACAACTTATTGTTGGGTGGGGGCCCCTA
TTGGAAGGTTTTCTAGAGAACCATATCGACCTTGCGGCGGGTGGTGCATTGGGTTTTATA
GGCGTTGCATCCCTTGTTGAGGGGTTGCAAAAGGCTATGGAGATAGGTTTTGTCGTGGAG
GGGGCAACCAACTATCTCTTTCTTCTTTGATAGTGCTTGGGGACGAAGATCTGGCTTATT
TTTGCTTGCAAAGGAGACCTTCCCTCACGCTCCCCC
■■Homology search results ■■ -
sp_hit_id Q5KJI2
Definition sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans
Align length 61
Score (bit) 33.9
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912693|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_G09.
         (456 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1 OS=Cryptoco...    34   0.34 
sp|Q58Z64|DHH1_CRYNV ATP-dependent RNA helicase VAD1 OS=Cryptoco...    32   1.3  
sp|Q9EQG3|SCEL_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=2        31   2.2  
sp|Q64317|DLX1_MOUSE Homeobox protein DLX-1 OS=Mus musculus GN=D...    30   4.9  
sp|P56177|DLX1_HUMAN Homeobox protein DLX-1 OS=Homo sapiens GN=D...    30   4.9  
sp|O95171|SCEL_HUMAN Sciellin OS=Homo sapiens GN=SCEL PE=1 SV=2        30   6.4  
sp|P16733|GM_HCMVA Glycoprotein M OS=Human cytomegalovirus (stra...    30   6.6  
sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-depen...    29   8.4  
sp|Q92236|GGPPS_GIBFU Geranylgeranyl pyrophosphate synthetase OS...    29   8.4  
sp|O95872|BAT4_HUMAN Protein BAT4 OS=Homo sapiens GN=BAT4 PE=2 SV=1    29   8.4  

>sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1
           OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1
          Length = 625

 Score = 33.9 bits (76), Expect = 0.34
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -3

Query: 403 SPSTIKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSLENLPIGAPTQ 224
           +P+ ++EER+S  PPP+    P   A P    Q       HPP   + + +  P  AP Q
Sbjct: 411 APAMVEEERES--PPPK----PAAIAAPPAQQQPQQRQRQHPPVPSHQAAQQSPAAAPVQ 464

Query: 223 Q 221
           Q
Sbjct: 465 Q 465


>sp|Q58Z64|DHH1_CRYNV ATP-dependent RNA helicase VAD1
           OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1
          Length = 616

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -3

Query: 403 SPSTIKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSLENLPIGAPTQ 224
           +P+ ++EER+S  PPP+    P   A P    Q       HPP   +    + P  AP Q
Sbjct: 411 APAMVEEERES--PPPK----PAAIAAPPAQQQPQQRQRQHPPVPSHQVAHHSPAAAPIQ 464

Query: 223 Q 221
           Q
Sbjct: 465 Q 465


>sp|Q9EQG3|SCEL_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=2
          Length = 652

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 415 ARSSSPST--IKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHPP 275
           A +S+P+T  +K++R SW PPP     P   A+P     R  +P  HPP
Sbjct: 121 ATASTPATTPVKKKRQSWFPPP----PPGHNASPSTAASRR-DPALHPP 164


>sp|Q64317|DLX1_MOUSE Homeobox protein DLX-1 OS=Mus musculus GN=Dlx1
           PE=2 SV=1
          Length = 255

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 361 PPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSLENL--PIGAP 230
           PP Q +SP P +     M  L +  H  P G Y S  +   P+G P
Sbjct: 25  PPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSASSFSRPLGYP 70


>sp|P56177|DLX1_HUMAN Homeobox protein DLX-1 OS=Homo sapiens GN=DLX1
           PE=2 SV=3
          Length = 255

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 361 PPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSLENL--PIGAP 230
           PP Q +SP P +     M  L +  H  P G Y S  +   P+G P
Sbjct: 25  PPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSASSFSRPLGYP 70


>sp|O95171|SCEL_HUMAN Sciellin OS=Homo sapiens GN=SCEL PE=1 SV=2
          Length = 688

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -3

Query: 415 ARSSSPSTIKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSLENLPIG 236
           A +S+ + +K++R SW PPP    +    A+   G +R   P  HPP        + P+ 
Sbjct: 148 ASTSATTPVKKKRQSWFPPPPPGYN----ASSSTGTRRR-EPGVHPP---IPPKPSSPVS 199

Query: 235 APTQ 224
           +P Q
Sbjct: 200 SPNQ 203


>sp|P16733|GM_HCMVA Glycoprotein M OS=Human cytomegalovirus (strain
           AD169) GN=GM PE=1 SV=1
          Length = 372

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 120 LTC*SAFYGHTF*ACSLYILVCDLRIAAAKENPLSLSQ 7
           L C + F    F A ++Y LVC ++I+  K+  +SL+Q
Sbjct: 77  LVCYAVFMQLVFLAVTIYYLVCWIKISMRKDKGMSLNQ 114


>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor
           ATP-dependent RNA helicase mog-5 OS=Caenorhabditis
           elegans GN=mog-5 PE=2 SV=1
          Length = 1200

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 311 DATPIKPNAPPAARSIWFSRKPSNRGPHPTIS 216
           DA  ++P  PPA+ S W + + S  G  P+ S
Sbjct: 324 DAIGVRPRTPPASTSSWMNPEASGVGQGPSTS 355


>sp|Q92236|GGPPS_GIBFU Geranylgeranyl pyrophosphate synthetase
           OS=Gibberella fujikuroi GN=GGS PE=3 SV=1
          Length = 418

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 371 LVAPSTTKPISIAFCNPSTRDATPIKPNAPPAARSIWFSRK 249
           LV+P+   P + +   P++ +ATP KP   P     W S+K
Sbjct: 41  LVSPNAIPPRTSSTGIPTSLNATPTKPVLRPVPEGDWLSQK 81


>sp|O95872|BAT4_HUMAN Protein BAT4 OS=Homo sapiens GN=BAT4 PE=2 SV=1
          Length = 356

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
 Frame = -2

Query: 338 IAFCNPSTRDATPIKPNA--PPAARSIWFS----RKPSNRGPHPTISCCN*LEMH 192
           +  C  S RDA  +   A  P  AR +  S    R P NR P P++  C   + H
Sbjct: 170 VGVCELSGRDAAQLAEEAGFPEVARMVRESHGETRSPENRSPTPSLQYCENCDTH 224
tr_hit_id Q9VPX2
Definition tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster
Align length 54
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912693|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_G09.
         (456 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster GN=CG47...    39   0.17 
tr|B4P311|B4P311_DROYA GE17341 OS=Drosophila yakuba GN=GE17341 P...    39   0.17 
tr|B4ID58|B4ID58_DROSE GM16795 OS=Drosophila sechellia GN=GM1679...    39   0.17 
tr|B3N8C2|B3N8C2_DROER GG24768 OS=Drosophila erecta GN=GG24768 P...    39   0.17 
tr|B4MZJ1|B4MZJ1_DROWI GK24669 OS=Drosophila willistoni GN=GK246...    38   0.22 
tr|B4LU37|B4LU37_DROVI GJ19520 OS=Drosophila virilis GN=GJ19520 ...    38   0.22 
tr|B4KEU3|B4KEU3_DROMO GI17977 OS=Drosophila mojavensis GN=GI179...    38   0.22 
tr|Q29LH5|Q29LH5_DROPS GA18388 OS=Drosophila pseudoobscura pseud...    38   0.29 
tr|B4JDF0|B4JDF0_DROGR GH11174 OS=Drosophila grimshawi GN=GH1117...    38   0.29 
tr|B4GPY3|B4GPY3_DROPE GL15573 OS=Drosophila persimilis GN=GL155...    38   0.29 
tr|B4Q6N2|B4Q6N2_DROSI GD23071 OS=Drosophila simulans GN=GD23071...    37   0.37 
tr|B3MN94|B3MN94_DROAN GF15164 OS=Drosophila ananassae GN=GF1516...    37   0.37 
tr|Q9ZR47|Q9ZR47_DAUCA Neutral invertase OS=Daucus carota PE=2 SV=1    36   1.1  
tr|A6RTI0|A6RTI0_BOTFB Predicted protein OS=Botryotinia fuckelia...    36   1.1  
tr|B6ICZ9|B6ICZ9_XENTR Putative uncharacterized protein OS=Xenop...    33   7.1  
tr|A3SKL3|A3SKL3_9RHOB Probable oxidoreductase OS=Roseovarius nu...    33   7.1  
tr|B8CI57|B8CI57_9GAMM Putative uncharacterized protein OS=Shewa...    33   9.3  
tr|Q7RHP8|Q7RHP8_PLAYO Putative uncharacterized protein PY03936 ...    33   9.3  
tr|Q381K8|Q381K8_9TRYP Putative uncharacterized protein OS=Trypa...    33   9.3  
tr|A6SGR2|A6SGR2_BOTFB Putative uncharacterized protein OS=Botry...    33   9.3  

>tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster GN=CG4726
           PE=2 SV=1
          Length = 512

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV +G  N
Sbjct: 401 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 454


>tr|B4P311|B4P311_DROYA GE17341 OS=Drosophila yakuba GN=GE17341 PE=4
           SV=1
          Length = 509

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV +G  N
Sbjct: 398 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 451


>tr|B4ID58|B4ID58_DROSE GM16795 OS=Drosophila sechellia GN=GM16795
           PE=4 SV=1
          Length = 512

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV +G  N
Sbjct: 401 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 454


>tr|B3N8C2|B3N8C2_DROER GG24768 OS=Drosophila erecta GN=GG24768 PE=4
           SV=1
          Length = 509

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV +G  N
Sbjct: 398 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 451


>tr|B4MZJ1|B4MZJ1_DROWI GK24669 OS=Drosophila willistoni GN=GK24669
           PE=4 SV=1
          Length = 514

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 401 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 454


>tr|B4LU37|B4LU37_DROVI GJ19520 OS=Drosophila virilis GN=GJ19520
           PE=4 SV=1
          Length = 512

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 399 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 452


>tr|B4KEU3|B4KEU3_DROMO GI17977 OS=Drosophila mojavensis GN=GI17977
           PE=4 SV=1
          Length = 512

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 399 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 452


>tr|Q29LH5|Q29LH5_DROPS GA18388 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA18388 PE=4 SV=1
          Length = 514

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 403 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIIVPLFVGFVTHGNQN 456


>tr|B4JDF0|B4JDF0_DROGR GH11174 OS=Drosophila grimshawi GN=GH11174
           PE=4 SV=1
          Length = 510

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 397 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIIVPLFVGFVTHGNQN 450


>tr|B4GPY3|B4GPY3_DROPE GL15573 OS=Drosophila persimilis GN=GL15573
           PE=4 SV=1
          Length = 514

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 403 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIIVPLFVGFVTHGNQN 456