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NBDC - LSDB Archive
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BP912702
Clone id YMU001_000021_H07
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000021_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GATTAGCAGAGCAAAGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCATCTCCATAGC
CGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTCAAAGAGCTT
CTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCTCGCCATCTC
TAATGGCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGA
GACTCTGTCCTACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGTGGACTTCAT
GGTCCGAAAAGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGTGTACCGAGA
GCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAAGCTGCCCAT
GTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTA
TCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCG
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 147
Score (bit) 178.0
E-value 1.0e-44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912702|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_H07.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   178   1e-44
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   176   8e-44
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   176   8e-44
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   175   1e-43
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   174   2e-43
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   174   3e-43
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   174   3e-43
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   173   5e-43
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   173   5e-43
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   172   7e-43
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   172   7e-43
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   172   7e-43
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   172   9e-43
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   172   9e-43
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   172   9e-43
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   171   2e-42
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   171   2e-42
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   171   2e-42
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   171   2e-42
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   171   2e-42
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   171   2e-42
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   171   3e-42
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   170   4e-42
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   170   4e-42
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   170   5e-42
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   169   6e-42
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   169   6e-42
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   169   8e-42
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   168   1e-41

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  178 bits (452), Expect = 1e-44
 Identities = 84/147 (57%), Positives = 105/147 (71%), Gaps = 5/147 (3%)
 Frame = +2

Query: 107 LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 274
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 275 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 451
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 452 REIAECAKEYPEAFIRVLGFDAKRQVQ 532
           +E+ EC KEYP AFIRV+GFD  RQVQ
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDNIRQVQ 168


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  177 bits (449), Expect = 3e-44
 Identities = 86/144 (59%), Positives = 106/144 (73%), Gaps = 5/144 (3%)
 Frame = +2

Query: 119 FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 286
           F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSSEQ+AK
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 287 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 463
           +VD+++RK   PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D++ VL+E+ 
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQV 535
           EC K YP AFIR++GFD KRQVQ+
Sbjct: 148 ECKKAYPSAFIRIIGFDNKRQVQI 171


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  176 bits (445), Expect = 8e-44
 Identities = 84/142 (59%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = +2

Query: 119 FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 286
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 287 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 466
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 467 CAKEYPEAFIRVLGFDAKRQVQ 532
             K YPE F+R++GFD KRQVQ
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQ 167


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  176 bits (445), Expect = 8e-44
 Identities = 84/142 (59%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = +2

Query: 119 FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 286
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 287 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 466
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 467 CAKEYPEAFIRVLGFDAKRQVQ 532
             K YPE F+R++GFD KRQVQ
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQ 167


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  175 bits (443), Expect = 1e-43
 Identities = 80/139 (57%), Positives = 99/139 (71%)
 Frame = +2

Query: 116 SFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 295
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 296 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAK 475
           +++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 476 EYPEAFIRVLGFDAKRQVQ 532
            YP+ F R++GFD  RQVQ
Sbjct: 148 AYPDYFNRIIGFDNTRQVQ 166


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  174 bits (441), Expect = 2e-43
 Identities = 83/146 (56%), Positives = 108/146 (73%), Gaps = 4/146 (2%)
 Frame = +2

Query: 107 LSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQ 277
           L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLPPL+ EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 278 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 454
           + K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 455 EIAECAKEYPEAFIRVLGFDAKRQVQ 532
           E+AEC  EYPEAFIR++GFD  RQVQ
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQ 166


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  174 bits (440), Expect = 3e-43
 Identities = 82/142 (57%), Positives = 104/142 (73%), Gaps = 4/142 (2%)
 Frame = +2

Query: 119 FSGLKATTLF-APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 289
           F+GLK+   F   K  N  +   SNG RV  M VW P   KK+ETLSYLPPL+  Q+AK+
Sbjct: 25  FTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKE 84

Query: 290 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 466
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D+A V++E+AE
Sbjct: 85  VDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAE 144

Query: 467 CAKEYPEAFIRVLGFDAKRQVQ 532
           C KEYP+A+IR++GFD  RQVQ
Sbjct: 145 CKKEYPQAWIRIIGFDNVRQVQ 166


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  174 bits (440), Expect = 3e-43
 Identities = 81/143 (56%), Positives = 104/143 (72%), Gaps = 5/143 (3%)
 Frame = +2

Query: 119 FSGLKATTLFAP--KSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 286
           F+GLK++  F    K+ N +    SNG RV+ M VW P   KKFETLSYLP L+  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 287 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 463
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQ 532
           EC KEYP AFIR++GFD  RQVQ
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQ 166


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  173 bits (438), Expect = 5e-43
 Identities = 83/142 (58%), Positives = 106/142 (74%), Gaps = 4/142 (2%)
 Frame = +2

Query: 119 FSGLKATTLF--APKSPNPLAI-SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 289
           F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYLPPLSSE +AK+
Sbjct: 30  FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 290 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 466
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D++ VL+E+ E
Sbjct: 90  VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 467 CAKEYPEAFIRVLGFDAKRQVQ 532
             K YP++FIR++GFD  RQVQ
Sbjct: 150 AKKAYPQSFIRIIGFDNVRQVQ 171


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  173 bits (438), Expect = 5e-43
 Identities = 81/144 (56%), Positives = 101/144 (70%), Gaps = 5/144 (3%)
 Frame = +2

Query: 116 SFSGLKATTLFAPKSPNPLAI----SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIA 283
           SF+GLK+   F       L I    SNG RV  MLVW P + KK+ETLSYLP LS EQ+ 
Sbjct: 25  SFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLL 84

Query: 284 KQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREI 460
           K+++++++KGW PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC DA  VL E+
Sbjct: 85  KEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 144

Query: 461 AECAKEYPEAFIRVLGFDAKRQVQ 532
            E  K YP+A+IR++GFD  RQVQ
Sbjct: 145 QEAKKAYPQAWIRIIGFDNVRQVQ 168
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 144
Score (bit) 275.0
E-value 1.0e-72
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912702|Adiantum capillus-veneris mRNA, clone:
YMU001_000021_H07.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   275   1e-72
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   193   6e-48
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   190   5e-47
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   189   8e-47
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   189   1e-46
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   189   1e-46
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   186   7e-46
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   180   4e-44
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   180   5e-44
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   179   6e-44
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   179   6e-44
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   178   1e-43
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   177   4e-43
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   176   5e-43
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   176   5e-43
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   176   9e-43
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   176   9e-43
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   175   1e-42
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   174   2e-42
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   174   2e-42
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   174   3e-42
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   174   3e-42
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   174   3e-42
tr|Q9FEE4|Q9FEE4_WHEAT Ribulose bisphosphate carboxylase small c...   173   5e-42
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   173   6e-42
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   173   6e-42
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   173   6e-42
tr|Q9SAW7|Q9SAW7_TRITU Ribulose bisphosphate carboxylase small c...   172   1e-41
tr|Q9SAW5|Q9SAW5_WHEAT Ribulose bisphosphate carboxylase small c...   172   1e-41

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  275 bits (702), Expect = 1e-72
 Identities = 127/144 (88%), Positives = 137/144 (95%)
 Frame = +2

Query: 107 LSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 286
           LSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 287 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 466
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 467 CAKEYPEAFIRVLGFDAKRQVQVS 538
           CAKEYP AFIRVLGFDAKRQVQV+
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVA 165


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  193 bits (490), Expect = 6e-48
 Identities = 90/144 (62%), Positives = 109/144 (75%), Gaps = 3/144 (2%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 463
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQV 535
           EC + +P  ++RVLGFD+K+QVQ+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQI 170


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  190 bits (482), Expect = 5e-47
 Identities = 89/144 (61%), Positives = 108/144 (75%), Gaps = 3/144 (2%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 463
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQV 535
           EC + +P  ++RVLGFD+K+QVQ+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQI 170


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  189 bits (480), Expect = 8e-47
 Identities = 87/144 (60%), Positives = 107/144 (74%), Gaps = 3/144 (2%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 463
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQV 535
           EC   YP  ++RVLGFD+K+QVQ+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQI 175


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  189 bits (479), Expect = 1e-46
 Identities = 86/144 (59%), Positives = 109/144 (75%), Gaps = 3/144 (2%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 463
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQV 535
           EC  ++P  ++RVLGFD+K+QVQ+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQI 205


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  189 bits (479), Expect = 1e-46
 Identities = 87/144 (60%), Positives = 108/144 (75%), Gaps = 3/144 (2%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 463
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQV 535
           EC  ++P  ++RVLGFD+K+QVQ+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQI 175


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  186 bits (472), Expect = 7e-46
 Identities = 84/144 (58%), Positives = 109/144 (75%), Gaps = 3/144 (2%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 463
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 464 ECAKEYPEAFIRVLGFDAKRQVQV 535
           EC  ++P  ++RVLGFD+K+QVQ+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQI 174


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  180 bits (457), Expect = 4e-44
 Identities = 84/147 (57%), Positives = 106/147 (72%), Gaps = 5/147 (3%)
 Frame = +2

Query: 107 LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 274
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 275 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 451
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 452 REIAECAKEYPEAFIRVLGFDAKRQVQ 532
           +E+ EC KEYP AFIRV+GFD+ RQVQ
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDSVRQVQ 168


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  180 bits (456), Expect = 5e-44
 Identities = 82/141 (58%), Positives = 102/141 (72%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 472
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 473 KEYPEAFIRVLGFDAKRQVQV 535
           K +P  F+RVLGFD  +QVQ+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQI 172


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  179 bits (455), Expect = 6e-44
 Identities = 83/141 (58%), Positives = 102/141 (72%)
 Frame = +2

Query: 113 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 292
           K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 293 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 472
           D+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 473 KEYPEAFIRVLGFDAKRQVQV 535
           K +P  F+RVLGFD  +QVQ+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQI 172