BP912712 |
Clone id |
YMU001_000022_A07 |
Library |
YMU01 |
Length |
476 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000022_A07. |
Accession |
BP912712 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTCTCACGTGTGTGGCTTCAGATCTTTGGCTTGGGCTGTCCAAGTCTATTTCACAGAAGC AATAGTCAAGGAAGCCAAAATAGCAGGACATGTGGTGGTGTCGTGGTCTATAATCCGATC CCACAAGTCGCCGTAAGAGTAATCATGATCAATATCTTCCAAACTATAAGGTTGGAACCG TCCATCTTCTCCTAGGGGTGAAAGATCAGCATTTAGTGTCAAAAATCGACATACTTGCAA GGAAAATTTAAGTACACCAAAAAATCTCAAAAGTCCCGCAAAGTAGAAAGAATAGGAATG AAGAAGATCTGGAAGCTGTGCTTGATGAAGTACCAAAAATACGATATGAGGAGGAGAAGC GATCAGAATCGAGTCATAGGATCCAAGAAATTGCTGGAAGACCAAGGGTATCTGTCCAAA TGTCAACACAATAGGTGGAGGCTATAGCACAAGCTGATGCCAAGTTCCACTAAAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O75330 |
Definition |
sp|O75330|HMMR_HUMAN Hyaluronan mediated motility receptor OS=Homo sapiens |
Align length |
51 |
Score (bit) |
30.4 |
E-value |
4.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912712|Adiantum capillus-veneris mRNA, clone: YMU001_000022_A07. (476 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O75330|HMMR_HUMAN Hyaluronan mediated motility receptor OS=Ho... 30 4.2 sp|Q6AYE4|VATC2_RAT V-type proton ATPase subunit C 2 OS=Rattus n... 30 5.5 sp|Q92SW4|IF2_RHIME Translation initiation factor IF-2 OS=Rhizob... 30 5.5 sp|Q99L60|VATC2_MOUSE V-type proton ATPase subunit C 2 OS=Mus mu... 30 7.2 sp|B1ATG9|U632A_MOUSE UPF0632 protein A OS=Mus musculus PE=3 SV=1 30 7.2 sp|P36413|ODP2_DICDI Dihydrolipoyllysine-residue acetyltransfera... 30 7.2 sp|Q9NX58|LYAR_HUMAN Cell growth-regulating nucleolar protein OS... 30 7.2 sp|P59242|CING_MOUSE Cingulin OS=Mus musculus GN=Cgn PE=1 SV=1 30 7.2 sp|Q8NEY4|VATC2_HUMAN V-type proton ATPase subunit C 2 OS=Homo s... 29 9.4 sp|Q80UF4|SDCG8_MOUSE Serologically defined colon cancer antigen... 29 9.4 sp|Q9HAU5|RENT2_HUMAN Regulator of nonsense transcripts 2 OS=Hom... 29 9.4 sp|A6UF29|IF2_SINMW Translation initiation factor IF-2 OS=Sinorh... 29 9.4 sp|Q9H3P7|GCP60_HUMAN Golgi resident protein GCP60 OS=Homo sapie... 29 9.4 sp|Q03MX6|CINA_STRTD Putative competence-damage inducible protei... 29 9.4 sp|Q5M6H3|CINA_STRT2 Putative competence-damage inducible protei... 29 9.4 sp|Q5M1Y3|CINA_STRT1 Putative competence-damage inducible protei... 29 9.4
>sp|O75330|HMMR_HUMAN Hyaluronan mediated motility receptor OS=Homo sapiens GN=HMMR PE=1 SV=2 Length = 724
Score = 30.4 bits (67), Expect = 4.2 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +3
Query: 252 VHQKISKVPQS---RKNRNEEDLEAVLDEVPKIRYEEEKRSESSHRIQEIA 395 +HQK+ + KN EE+L+ LDE+ K++ +EE+ +++E A Sbjct: 356 LHQKLCSFQEEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEEEA 406
>sp|Q6AYE4|VATC2_RAT V-type proton ATPase subunit C 2 OS=Rattus norvegicus GN=Atp6v1c2 PE=2 SV=1 Length = 425
Score = 30.0 bits (66), Expect = 5.5 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Frame = +3
Query: 123 TSRRKSNHDQY--LPNYKVGTVHLLLGVKDQHLVSKIDILARKI--*VHQKISKVPQSRK 290 TS+ +H+ +P++KVGT+ L+G+ D+ + K+D A + + Q + +V + K Sbjct: 26 TSKSNLSHNTKFAIPDFKVGTLDSLVGLSDE--LGKLDTFAESLIKRMAQSVVEVMEDSK 83
Query: 291 NRNEEDLEA 317 + E+L A Sbjct: 84 GKVHENLLA 92
>sp|Q92SW4|IF2_RHIME Translation initiation factor IF-2 OS=Rhizobium meliloti GN=infB PE=3 SV=1 Length = 889
Score = 30.0 bits (66), Expect = 5.5 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Frame = +3
Query: 300 EEDLEAVLDEVPKIRYEEEK----RSESSHRIQEIAGRPRVSVQMSTQ*VEAIAQA 455 EE DEV + R EEE+ + E++ R E A RP V + + + VEA + A Sbjct: 132 EEAKRRAEDEVRRRREEEERLAREKEEAARRAAEEAARPPVEAEKTEEKVEAASPA 187
>sp|Q99L60|VATC2_MOUSE V-type proton ATPase subunit C 2 OS=Mus musculus GN=Atp6v1c2 PE=2 SV=1 Length = 427
Score = 29.6 bits (65), Expect = 7.2 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Frame = +3
Query: 123 TSRRKSNHDQY--LPNYKVGTVHLLLGVKDQHLVSKIDILARKI--*VHQKISKVPQSRK 290 TS+ +H+ +P++KVGT+ L+G+ D+ + K+D A + + Q + +V + K Sbjct: 26 TSKSNLSHNTKFAIPDFKVGTLDSLVGLSDE--LGKLDTFAESLIKRMAQSVVEVMEDSK 83
Query: 291 NRNEEDLEA 317 + E L A Sbjct: 84 GKAHETLLA 92
>sp|B1ATG9|U632A_MOUSE UPF0632 protein A OS=Mus musculus PE=3 SV=1 Length = 517
Score = 29.6 bits (65), Expect = 7.2 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -3
Query: 171 PYSLEDIDHDYSYGDLWDRIIDHDTTTCP 85 PY+ ED+ Y+ GDL I +HDT+ P Sbjct: 244 PYTTEDLIKHYNCGDLNAVIFNHDTSQLP 272
>sp|P36413|ODP2_DICDI Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=pdhC PE=2 SV=2 Length = 635
Score = 29.6 bits (65), Expect = 7.2 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = +3
Query: 195 GVKDQHLVSKIDILARKI*VHQKISKVPQSRKNRNEEDLEAVLDEVPKIRYEEEKRSESS 374 G K + I I+ K + I ++ K ++ V +E PK + E K+S + Sbjct: 146 GTKGIEINKPIAIIVSK---KEDIESAVKNYKPSSQASSTPVQEEAPKPKQEAPKKSTKT 202
Query: 375 HRIQEIAGRPRVSVQMST 428 + ++ G P +S M T Sbjct: 203 YPAHKVVGMPALSPSMET 220
>sp|Q9NX58|LYAR_HUMAN Cell growth-regulating nucleolar protein OS=Homo sapiens GN=LYAR PE=1 SV=2 Length = 379
Score = 29.6 bits (65), Expect = 7.2 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = +3
Query: 255 HQKISK--VPQSRKNRNEEDLEAVLDEVPKIRYEEEKRSESSHRIQEIAGRPRVSV 416 HQ+ S+ P+ RK E DLEA +EVP+ KRS+ + ++ A V Sbjct: 211 HQENSRNQKPKKRKKGQEADLEAGGEEVPEANGSAGKRSKKKKQRKDSASEEEAHV 266
>sp|P59242|CING_MOUSE Cingulin OS=Mus musculus GN=Cgn PE=1 SV=1 Length = 1191
Score = 29.6 bits (65), Expect = 7.2 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Frame = +3
Query: 279 QSRKNRNEEDLEAVLDEVPKIRY-----------EEEKRSESSHRIQEIAGRPRVSVQMS 425 Q+ R E+L+ LDE K R + E+++E HR+QE+ R + VQ S Sbjct: 349 QAELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQS 408
Query: 426 TQ 431 ++ Sbjct: 409 SK 410
>sp|Q8NEY4|VATC2_HUMAN V-type proton ATPase subunit C 2 OS=Homo sapiens GN=ATP6V1C2 PE=2 SV=2 Length = 427
Score = 29.3 bits (64), Expect = 9.4 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = +3
Query: 156 LPNYKVGTVHLLLGVKDQHLVSKIDILARKI--*VHQKISKVPQSRKNRNEEDLEA 317 +P++KVGT+ L+G+ D+ + K+D A + + Q + +V + K + +E L A Sbjct: 39 IPDFKVGTLDSLVGLSDE--LGKLDTFAESLIRRMAQSVVEVMEDSKGKVQEHLLA 92
>sp|Q80UF4|SDCG8_MOUSE Serologically defined colon cancer antigen 8 homolog OS=Mus musculus GN=Sdccag8 PE=1 SV=1 Length = 717
Score = 29.3 bits (64), Expect = 9.4 Identities = 17/70 (24%), Positives = 35/70 (50%) Frame = +3
Query: 261 KISKVPQSRKNRNEEDLEAVLDEVPKIRYEEEKRSESSHRIQEIAGRPRVSVQMSTQ*VE 440 ++ K + K ++ +DLE + E+ K+R E + + + Q+ A R R Q + E Sbjct: 474 EVEKEHREYKAKSHKDLEMKVQEIEKLRLELSESEQHVEQEQQKAARAR---QECLRVTE 530
Query: 441 AIAQADAKFH 470 + +A+ + H Sbjct: 531 LLGEAERQLH 540
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q810R2 |
Definition |
tr|Q810R2|Q810R2_MOUSE Upf2 protein (Fragment) OS=Mus musculus |
Align length |
82 |
Score (bit) |
37.4 |
E-value |
0.38 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912712|Adiantum capillus-veneris mRNA, clone: YMU001_000022_A07. (476 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q810R2|Q810R2_MOUSE Upf2 protein (Fragment) OS=Mus musculus G... 37 0.38 tr|A2AT37|A2AT37_MOUSE UPF2 regulator of nonsense transcripts ho... 37 0.38 tr|B6C868|B6C868_9ROSA Sucrose non-fermenting-1-related protein ... 34 3.2 tr|Q5C182|Q5C182_SCHJA SJCHGC08031 protein (Fragment) OS=Schisto... 34 3.2 tr|Q869Q5|Q869Q5_DICDI Similar to Arabidopsis thaliana (Mouse-ea... 33 7.1 tr|Q555H8|Q555H8_DICDI Putative uncharacterized protein OS=Dicty... 33 7.1 tr|B6LBM0|B6LBM0_BRAFL Putative uncharacterized protein OS=Branc... 33 9.2 tr|B0XCL0|B0XCL0_CULQU Myosin I OS=Culex quinquefasciatus GN=Cpi... 33 9.2 tr|B6Q942|B6Q942_PENMA ATP-dependent RNA helicase Mrh4, putative... 33 9.2 tr|A7TF71|A7TF71_VANPO Putative uncharacterized protein OS=Vande... 33 9.2
>tr|Q810R2|Q810R2_MOUSE Upf2 protein (Fragment) OS=Mus musculus GN=Upf2 PE=2 SV=1 Length = 186
Score = 37.4 bits (85), Expect = 0.38 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%) Frame = +3
Query: 243 KI*VHQKISKVPQSRKNRNEEDLEAVLD------EVPKIRYEEE--KRSESSHRIQEIAG 398 K+ +++SKVP+ +K R EED D E K++ EEE K+ E + QE Sbjct: 42 KVTAKKEVSKVPEDKKKRLEEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKQEEEE 101
Query: 399 RPRVSVQMSTQ*VEAIAQADAK 464 R + Q Q EA AQ K Sbjct: 102 RKKQEEQAKRQQEEAAAQLKEK 123
>tr|A2AT37|A2AT37_MOUSE UPF2 regulator of nonsense transcripts homolog (Yeast) OS=Mus musculus GN=Upf2 PE=2 SV=1 Length = 1269
Score = 37.4 bits (85), Expect = 0.38 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%) Frame = +3
Query: 243 KI*VHQKISKVPQSRKNRNEEDLEAVLD------EVPKIRYEEE--KRSESSHRIQEIAG 398 K+ +++SKVP+ +K R EED D E K++ EEE K+ E + QE Sbjct: 42 KVTAKKEVSKVPEDKKKRLEEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKQEEEE 101
Query: 399 RPRVSVQMSTQ*VEAIAQADAK 464 R + Q Q EA AQ K Sbjct: 102 RKKQEEQAKRQQEEAAAQLKEK 123
>tr|B6C868|B6C868_9ROSA Sucrose non-fermenting-1-related protein kinase 1 OS=Malus hupehensis PE=2 SV=1 Length = 515
Score = 34.3 bits (77), Expect = 3.2 Identities = 25/75 (33%), Positives = 35/75 (46%) Frame = +3
Query: 120 PTSRRKSNHDQYLPNYKVGTVHLLLGVKDQHLVSKIDILARKI*VHQKISKVPQSRKNRN 299 P R S+ D YLPNYK+G LG+ K+ I + H+ K+ RK +N Sbjct: 4 PVGRGGSSADTYLPNYKLGKT---LGIGS---FGKVKIAEHALTGHKVAIKILNRRKIKN 57
Query: 300 EEDLEAVLDEVPKIR 344 E E V E+ +R Sbjct: 58 LEMEEKVRREIKILR 72
>tr|Q5C182|Q5C182_SCHJA SJCHGC08031 protein (Fragment) OS=Schistosoma japonicum PE=2 SV=2 Length = 217
Score = 34.3 bits (77), Expect = 3.2 Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 2/53 (3%) Frame = +3
Query: 159 PNYKVGTVHLLLGVKDQHLVSKIDILARKI--*VHQKISKVPQSRKNRNEEDL 311 P++KVGT+ +L+G+ D+ +SK+D+ A I V Q + V + +K++ E++L Sbjct: 29 PDFKVGTLDILVGLSDE--LSKLDVYAESITKKVAQYMGDVLEEQKHKLEDNL 79
>tr|Q869Q5|Q869Q5_DICDI Similar to Arabidopsis thaliana (Mouse-ear cress). Genomic DNA, chromosome 5, P1 clone:MQJ2 OS=Dictyostelium discoideum PE=4 SV=1 Length = 1837
Score = 33.1 bits (74), Expect = 7.1 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = +1
Query: 247 FKYTKKSQKSRKVERIGMKKI--WKLCLMKYQKYDMRRRSDQN 369 FK KKS+ ++ + I M ++ W L L+ Y K D+ RRS N Sbjct: 1521 FKPMKKSKDNQLINSISMGQLMCWNLLLLNYSKIDLNRRSILN 1563
>tr|Q555H8|Q555H8_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum GN=DDB_0217525 PE=4 SV=1 Length = 1864
Score = 33.1 bits (74), Expect = 7.1 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = +1
Query: 247 FKYTKKSQKSRKVERIGMKKI--WKLCLMKYQKYDMRRRSDQN 369 FK KKS+ ++ + I M ++ W L L+ Y K D+ RRS N Sbjct: 1548 FKPMKKSKDNQLINSISMGQLMCWNLLLLNYSKIDLNRRSILN 1590
>tr|B6LBM0|B6LBM0_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_68569 PE=4 SV=1 Length = 5553
Score = 32.7 bits (73), Expect = 9.2 Identities = 17/40 (42%), Positives = 24/40 (60%) Frame = +3
Query: 288 KNRNEEDLEAVLDEVPKIRYEEEKRSESSHRIQEIAGRPR 407 K++ EE+L+ LDE + R E+EKR E + QE R R Sbjct: 4439 KHKKEEELKQRLDEQERKRKEDEKRKEEERKKQEEEERRR 4478
>tr|B0XCL0|B0XCL0_CULQU Myosin I OS=Culex quinquefasciatus GN=CpipJ_CPIJ017220 PE=4 SV=1 Length = 488
Score = 32.7 bits (73), Expect = 9.2 Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 5/68 (7%) Frame = +3
Query: 252 VHQKISKVPQSRKNRNEEDLEAV-----LDEVPKIRYEEEKRSESSHRIQEIAGRPRVSV 416 V Q++ ++P+ +K R++ + V ++E PK + ++EKR + QE G ++S+ Sbjct: 253 VCQEVEEIPKKKKKRSKNEAPEVEVTQEVEETPKKKSKKEKRRQIEEEAQETVGE-QISL 311
Query: 417 QMSTQ*VE 440 + + VE Sbjct: 312 EQLEEPVE 319
>tr|B6Q942|B6Q942_PENMA ATP-dependent RNA helicase Mrh4, putative OS=Penicillium marneffei ATCC 18224 GN=PMAA_070820 PE=4 SV=1 Length = 640
Score = 32.7 bits (73), Expect = 9.2 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Frame = +3
Query: 120 PTSRRKS-----NHDQYLPNYKVGTVHLLLGVKDQHLVSKIDILARKI*VHQKISKVPQS 284 PT ++K+ N++Q+L + G+ L +LV ID + R + +KI + Q Sbjct: 192 PTKKKKASELQYNYEQFLLAAETGSGKTLA-----YLVPIIDNIKRTE-MAEKIEEEKQL 245
Query: 285 RKNRNEEDLEAVLDEVPKIRYEEEKRSESSHRIQEIAGRPRVSVQMSTQ*VEAIAQADAK 464 + E + A K R+ E + E S + AGRPR + + T E +AQ AK Sbjct: 246 AEKAKESEKRA------KERHNELEPPELSENLTTSAGRPRAIILLPTS--ELVAQVGAK 297
>tr|A7TF71|A7TF71_VANPO Putative uncharacterized protein OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_2000p63 PE=4 SV=1 Length = 1053
Score = 32.7 bits (73), Expect = 9.2 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = +3
Query: 261 KISKVPQSRKNRNEE-DLEAVLDEVPKIRYEEEKRSESSHRIQEIAGRPRVSVQMSTQ 431 K+ K+P + +NRN E + LDEV ++ ++ KR + + E+A + R+S M Q Sbjct: 635 KVPKLPDNLENRNPELNFALNLDEV-VVQGKDNKRGHNKYETDELADQMRISALMLAQ 691
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