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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912724
Clone id YMU001_000022_B08
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCTCTCACGCTGTGAGGCATACTGCTTTGCAACATGAGCAACAAAGCCTGGTATGTCTGC
CAGTTCCTTTTGCATAAGGGTTAGCAATAATGCCCTCTCCTCAGTGGAAACATTGGCAGA
TGAAGCTGCCATTACTGCCACAGAACCTCCTGCCGAATGAATAGGAAAACACGCAACAAC
AACCTGCAAAGCAAGCTCCAAGTCCGGAACAAATTCACTGTACGAGCTGAGTGCTGGAAC
AGAGAGAGCAACGTCCAACCATTTGCAGACTGCCACTTTAAAGTTACCAGGTTTTGTGTG
TTTGATAAAGGTTGCCGATCACTTTCTTGCTGCTTGTGTAGAACAGGCACCAAGATGGAT
AAGATAAAGGGAAGCACCTTTGATTTTCCATGGACAACAGTGTCCTCCAGAGACCCTTGG
TCTATGACTAGCATCTTAAAAAACTTCTCTGCATACTCAACCCTTTTATCCCCCTGACAG
ATCTTTCTGAGTAGAAACAACAGAGCACGTAGGCAAGGATCCTTGTTATCCTCCACGTTA
TCA
■■Homology search results ■■ -
sp_hit_id P26371
Definition sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 OS=Homo sapiens
Align length 71
Score (bit) 34.3
E-value 0.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912724|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_B08.
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 OS=Homo sap...    34   0.40 
sp|O94385|PO152_SCHPO Probable nucleoporin POM152-like OS=Schizo...    32   2.6  
sp|A4WV24|SYM_RHOS5 Methionyl-tRNA synthetase OS=Rhodobacter sph...    31   3.4  
sp|Q3J0T3|SYM_RHOS4 Methionyl-tRNA synthetase OS=Rhodobacter sph...    31   3.4  
sp|A3PLG8|SYM_RHOS1 Methionyl-tRNA synthetase OS=Rhodobacter sph...    31   3.4  
sp|Q5LTL1|SYM_SILPO Methionyl-tRNA synthetase OS=Silicibacter po...    30   5.8  
sp|O18416|TPM_DERPT Tropomyosin OS=Dermatophagoides pteronyssinu...    30   5.8  
sp|A8LIJ9|SYM_DINSH Methionyl-tRNA synthetase OS=Dinoroseobacter...    30   7.6  
sp|O13310|ORB6_SCHPO Serine/threonine-protein kinase orb6 OS=Sch...    30   7.6  
sp|P26011|ITB7_MOUSE Integrin beta-7 OS=Mus musculus GN=Itgb7 PE...    30   7.6  
sp|P73930|FTSY_SYNY3 Cell division protein ftsY homolog OS=Synec...    30   7.6  
sp|Q1GEI7|SYM_SILST Methionyl-tRNA synthetase OS=Silicibacter sp...    30   9.9  
sp|Q166L9|SYM_ROSDO Methionyl-tRNA synthetase OS=Roseobacter den...    30   9.9  
sp|Q60841|RELN_MOUSE Reelin OS=Mus musculus GN=Reln PE=1 SV=2          30   9.9  

>sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 OS=Homo
           sapiens GN=KRTAP5-9 PE=2 SV=1
          Length = 169

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = -3

Query: 211 CSGLGACFAGCCCVFSYSF---GRRFCGSNGSFICQCFH*G--EGIIANPYAKGTGRHTR 47
           C+ +  C   CCCV + S    G+R CGS G     C   G  +     P    +G  + 
Sbjct: 36  CAPVYCCKPVCCCVPACSCSSCGKRGCGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSS 95

Query: 46  LC-CSCCKAVC 17
            C CSCCK  C
Sbjct: 96  CCQCSCCKPYC 106


>sp|O94385|PO152_SCHPO Probable nucleoporin POM152-like
            OS=Schizosaccharomyces pombe GN=SPBC29A10.07 PE=2 SV=3
          Length = 1250

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 221  YELSAGTERATSN-HLQTATLKLPGFVCLIKVADH 322
            YE +  T+ ATS+ H+ T  ++LPG V +  ++DH
Sbjct: 1101 YEFNGVTQHATSDSHILTRLIELPGVVAMKSISDH 1135


>sp|A4WV24|SYM_RHOS5 Methionyl-tRNA synthetase OS=Rhodobacter
           sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=metG PE=3
           SV=1
          Length = 572

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 358 DKIKGSTFDFPWTTVSSRDPWSMTSILKNFS 450
           D +   T  FP T + SR+PW +   +K+F+
Sbjct: 308 DNVPFHTLSFPATIMGSREPWKLVDYIKSFN 338


>sp|Q3J0T3|SYM_RHOS4 Methionyl-tRNA synthetase OS=Rhodobacter
           sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
           158) GN=metG PE=3 SV=1
          Length = 572

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 358 DKIKGSTFDFPWTTVSSRDPWSMTSILKNFS 450
           D +   T  FP T + SR+PW +   +K+F+
Sbjct: 308 DNVPFHTLSFPATIMGSREPWKLVDYIKSFN 338


>sp|A3PLG8|SYM_RHOS1 Methionyl-tRNA synthetase OS=Rhodobacter
           sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=metG PE=3
           SV=1
          Length = 572

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 358 DKIKGSTFDFPWTTVSSRDPWSMTSILKNFS 450
           D +   T  FP T + SR+PW +   +K+F+
Sbjct: 308 DNVPFHTLSFPATIMGSREPWKLVDYIKSFN 338


>sp|Q5LTL1|SYM_SILPO Methionyl-tRNA synthetase OS=Silicibacter
           pomeroyi GN=metG PE=3 SV=1
          Length = 572

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 358 DKIKGSTFDFPWTTVSSRDPWSMTSILKNFS 450
           D +   T  FP T + S +PW M   LK+F+
Sbjct: 308 DNVPFHTLSFPATLIGSGEPWKMVDHLKSFN 338


>sp|O18416|TPM_DERPT Tropomyosin OS=Dermatophagoides pteronyssinus
           PE=1 SV=1
          Length = 284

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 485 KICQGDKRVEYAEKFFKMLVIDQGSLEDTVVHGKSK 378
           K+ + + R E+AE+  + L  + G LED +VH K K
Sbjct: 231 KLKEAEARAEFAERSVQKLQKEVGRLEDELVHEKEK 266


>sp|A8LIJ9|SYM_DINSH Methionyl-tRNA synthetase OS=Dinoroseobacter
           shibae (strain DFL 12) GN=metG PE=3 SV=1
          Length = 572

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 358 DKIKGSTFDFPWTTVSSRDPWSMTSILKNFS 450
           D +   T  FP T + S DPW +   +K+F+
Sbjct: 308 DNVPFHTLSFPATIMGSGDPWKLVDYIKSFN 338


>sp|O13310|ORB6_SCHPO Serine/threonine-protein kinase orb6
           OS=Schizosaccharomyces pombe GN=orb6 PE=1 SV=1
          Length = 469

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +1

Query: 241 RESNVQPFADCHFKVTRFCV---FDKGCRSLSCCLCRTGTKMDKIKGSTFDFPWTTVSSR 411
           +  N+    D H K++ F +   F K  +S S    RTG  + +  G   D  W T+SS+
Sbjct: 218 KPDNILIDRDGHIKLSDFGLSTGFYKQDQSASYMKPRTGNTVKR--GQMVDAIWLTMSSK 275

Query: 412 DPWSMTSILKNFSAYSTLLSP 474
           D  +     +   AYST+ +P
Sbjct: 276 DKMATWKKNRRVMAYSTVGTP 296


>sp|P26011|ITB7_MOUSE Integrin beta-7 OS=Mus musculus GN=Itgb7 PE=1
           SV=2
          Length = 806

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
 Frame = -3

Query: 214 ICSGLGACFAGCCCVFSYSFGR------RFCGSNGSFICQCFH*GEGIIANPYAKGTGRH 53
           +CSG G C  G C     S GR        C  +   +C  F   +  + + +A  TGR 
Sbjct: 536 LCSGKGRCQCGRCSCSGQSSGRLCECDDASCERHEGILCGGFGHCQCGVCHCHANHTGR- 594

Query: 52  TRLCCSCCKAV 20
               C C K+V
Sbjct: 595 ---ACECSKSV 602
tr_hit_id A9S0A5
Definition tr|A9S0A5|A9S0A5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 59
Score (bit) 43.5
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912724|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_B08.
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S0A5|A9S0A5_PHYPA Predicted protein OS=Physcomitrella paten...    44   2e-08
tr|Q5JNB3|Q5JNB3_ORYSJ Zinc finger protein-like (Os01g0977600 pr...    40   0.081
tr|B8AA81|B8AA81_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.081
tr|A3A234|A3A234_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.081
tr|Q8IJI5|Q8IJI5_PLAF7 Putative uncharacterized protein OS=Plasm...    36   1.2  
tr|Q9U3E6|Q9U3E6_CAEEL Protein F53H2.1, partially confirmed by t...    35   2.0  
tr|B8PF28|B8PF28_9APHY Predicted protein OS=Postia placenta Mad-...    35   2.6  
tr|B3NWG2|B3NWG2_DROER GG18009 OS=Drosophila erecta GN=GG18009 P...    35   3.4  
tr|Q4UAQ6|Q4UAQ6_THEAN DNA repair helicase, putative OS=Theileri...    34   5.7  
tr|A1DKA0|A1DKA0_NEOFI Class V chitinase, putative OS=Neosartory...    34   5.7  
tr|B7G6E3|B7G6E3_PHATR Predicted protein OS=Phaeodactylum tricor...    33   7.4  
tr|B6T4N6|B6T4N6_MAIZE RING finger and CHY zinc finger domain-co...    33   7.4  
tr|B6SHH0|B6SHH0_MAIZE Putative uncharacterized protein OS=Zea m...    33   7.4  

>tr|A9S0A5|A9S0A5_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_162093 PE=4 SV=1
          Length = 1879

 Score = 43.5 bits (101), Expect(2) = 2e-08
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = -2

Query: 509  RALLFLLRKICQGDK--RVEYAEKFFKMLVIDQGSLEDTVVHGKSKVLPFILSILVPVL 339
            RALL LLR +  G+   R   AEKFF   V    ++ D+      KVLPF+LSIL+PV+
Sbjct: 1127 RALLTLLRALLNGEAAWRRGIAEKFFFEYVAKSSNVTDSADADALKVLPFVLSILMPVM 1185



 Score = 37.7 bits (86), Expect(2) = 2e-08
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = -1

Query: 285  NFKVAVCKWLDVALSVPALSSYSEFVPDL--ELALQVVVACFPIHXXXXXXXXXXXXXXX 112
            + K  VC WL+ ALS P L  + +   +L  +  L+V VACFP+                
Sbjct: 1200 SLKRIVCDWLNKALSFPPLVDFEKGSTELIGKHWLEVAVACFPLQMPGVSSGIAAAASAK 1259

Query: 111  XSTEERALLLTLMQKE 64
             S +E +LLL L++++
Sbjct: 1260 VSLQETSLLLRLLRRQ 1275


>tr|Q5JNB3|Q5JNB3_ORYSJ Zinc finger protein-like (Os01g0977600
            protein) OS=Oryza sativa subsp. japonica GN=P0020E09.22-1
            PE=4 SV=1
          Length = 1921

 Score = 40.0 bits (92), Expect = 0.081
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = -1

Query: 270  VCKWLDVALSVPALSSYSEFVPDLELALQVVVACFPIHXXXXXXXXXXXXXXXXSTEERA 91
            +  WLDVA+S  + S       D+   +QVV++CFP++                S  ER+
Sbjct: 1241 ILSWLDVAISCLSSSPREVLQQDIVDWMQVVLSCFPLNITCGTQKLEVKIEREISDTERS 1300

Query: 90   LLLTLMQK 67
            LLLTL QK
Sbjct: 1301 LLLTLFQK 1308


>tr|B8AA81|B8AA81_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_05440 PE=4 SV=1
          Length = 1754

 Score = 40.0 bits (92), Expect = 0.081
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = -1

Query: 270  VCKWLDVALSVPALSSYSEFVPDLELALQVVVACFPIHXXXXXXXXXXXXXXXXSTEERA 91
            +  WLDVA+S  + S       D+   +QVV++CFP++                S  ER+
Sbjct: 1253 ILSWLDVAISCLSSSPREVLQQDIVDWMQVVLSCFPLNITCGTQKLEVKIEREISDTERS 1312

Query: 90   LLLTLMQK 67
            LLLTL QK
Sbjct: 1313 LLLTLFQK 1320


>tr|A3A234|A3A234_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_004856 PE=4 SV=1
          Length = 1888

 Score = 40.0 bits (92), Expect = 0.081
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = -1

Query: 270  VCKWLDVALSVPALSSYSEFVPDLELALQVVVACFPIHXXXXXXXXXXXXXXXXSTEERA 91
            +  WLDVA+S  + S       D+   +QVV++CFP++                S  ER+
Sbjct: 1227 ILSWLDVAISCLSSSPREVLQQDIVDWMQVVLSCFPLNITCGTQKLEVKIEREISDTERS 1286

Query: 90   LLLTLMQK 67
            LLLTL QK
Sbjct: 1287 LLLTLFQK 1294


>tr|Q8IJI5|Q8IJI5_PLAF7 Putative uncharacterized protein OS=Plasmodium
            falciparum (isolate 3D7) GN=PF10_0212 PE=4 SV=1
          Length = 4433

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
 Frame = +1

Query: 130  HYCHRTSCRMNRKTRNNNLQSKLQVRNKFTVRAECWNRESNVQPFADCHFKVTRFCVFDK 309
            H  H      N    NNN  +K Q  +        WN+     PF   + K++  C F+ 
Sbjct: 2666 HNRHNEHNHHNEHDNNNNKVTKSQSASSHLSNVSTWNK-----PFFVYNKKISVNCSFNI 2720

Query: 310  GCRSLSCCLCRTGTKMDK-IKGSTFDFPWTTVSSRDPWSMTSILKNFSAYSTLLSP*QIF 486
              + L+ CLC +G K++K I+ +T DF          +++ S +    AYS LL    +F
Sbjct: 2721 LIKKLNFCLC-SGDKINKIIQINTDDF---------NFNVKSYINADFAYSLLLKDISVF 2770

Query: 487  LSRNNR 504
                ++
Sbjct: 2771 FIHKDK 2776


>tr|Q9U3E6|Q9U3E6_CAEEL Protein F53H2.1, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=F53H2.1
           PE=2 SV=1
          Length = 914

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = +1

Query: 148 SCRMNRKTRNNNLQSKLQVRNKFTV-RAECWN----RESNVQPFADCHFKVTRFCVFDKG 312
           SC  N++  NNN Q K+Q    FT+   +C++    R +N+   +  +        +++G
Sbjct: 214 SCNSNQQAENNNFQQKMQC---FTICSPQCYSPQNFRRANIDEISSLNTYKEYLNYYEQG 270

Query: 313 CRSLSCCLCRTGTKMDKIK 369
           C S+S  + +TG   +  K
Sbjct: 271 CTSVSSSVHKTGPIYENTK 289


>tr|B8PF28|B8PF28_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_104078 PE=4 SV=1
          Length = 998

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -1

Query: 312 TFIKHTKPGNFKVAVCKWLDVALSVPALSSY---SEFVPDLELALQVV 178
           TFI+H      + A  KWLDVA + P L++Y    E  P +E AL  +
Sbjct: 398 TFIRHKYNKTLRFAAKKWLDVADATPHLANYPYAQELAPIIESALDCI 445


>tr|B3NWG2|B3NWG2_DROER GG18009 OS=Drosophila erecta GN=GG18009 PE=4
           SV=1
          Length = 556

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +1

Query: 148 SCRMNRKTRNNNLQ-SKLQVRNKFTVRAECWNRESNVQPFADCHFKVTRFCVFD-----K 309
           +C + R +  + L    + V++K  V   C    SN+    D H  +  F   D     K
Sbjct: 4   NCVLCRSSEQDELVFGTVHVQDKMMVHRNCLYLSSNLIQRGDKHLGILNFLKEDIEAEAK 63

Query: 310 GCRSLSCCLCR 342
            CR+L+CC CR
Sbjct: 64  RCRTLTCCYCR 74


>tr|Q4UAQ6|Q4UAQ6_THEAN DNA repair helicase, putative OS=Theileria
           annulata GN=TA17205 PE=4 SV=1
          Length = 965

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = -2

Query: 539 NVEDNKDPCLRALLFLLRKICQGDKRVE--YAEKFFKMLVIDQGSLEDTVVHGKSKVLPF 366
           N E N+D  +  L+ +LRKIC   K ++  Y  K+F       GSL D+V    S+ L  
Sbjct: 539 NKELNQDKNILRLISILRKICNHPKMLDSRYINKYFYPNDCINGSLTDSVNRSPSRNLTS 598

Query: 365 ILSI----LVPVLHKQQESDRQPLSNTQNLVTLKWQSA 264
           +L+        VL+ Q E       NTQ+    + +SA
Sbjct: 599 LLNSSPYRFNLVLNNQLEISNLNGKNTQSPSRRRIESA 636


>tr|A1DKA0|A1DKA0_NEOFI Class V chitinase, putative OS=Neosartorya
           fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181)
           GN=NFIA_004990 PE=4 SV=1
          Length = 1240

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
 Frame = -3

Query: 211 CSGLGACFAGCCCVFSY-SFGRRFCGSNGSFICQCFH*GEGIIANPYAKGTGRHTRLC-- 41
           CS L  C  GCC  F Y   G  +CG++   +  C +  E   +NP A G       C  
Sbjct: 30  CSALSPCATGCCNKFGYCGVGDDYCGAD--CVAGCDYRPECDASNPCATGCCNKFGYCGL 87

Query: 40  --CSCCKAVCL 14
               C K VC+
Sbjct: 88  GPDYCAKDVCV 98