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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912733
Clone id YMU001_000022_C05
Library
Length 633
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGAGTGTAGAGACTTTGAGTCTATGGAGGAGGTGTTTGACGAGTTTATTGAGGAATTCTC
ACAAATGGGGATAGCTCATAATACAGTCTCACAAATCCATGAATTCAAACAGAAAGAAGG
GGAATCTGTGCAAAAGACAGCCCTACGACTAAAAAGACATATTAAGTTCTGCCCTGTGGA
AGAACTATCAACTCAGTCCAAACTTATGCTTATATTTATCCAAGGAATAAGGAATGCAAA
TCTCCAGAAGGACTTACATATGAAGAGGAGCACAATGTTAAATTAGTTAACTAAGGAGGC
TCTTTACCTTGTAGACGATTGTACGGTCTACAAGGAGGGTGAATTCAAGGATCTTGACGA
TGATTCATCCTCACAACAAAGTGGAAGCAAGTCCGCTAAGACAGCACCAAAAGAAGAAGT
AGCTATAAGCCAGGAGCAGCTTGTAGAGGAAGTGTTAAAAAAGATTAACCTGTATGCCAA
ACCTTGAGCTAAACAGCCCAAGTGGTGTGCTATTGAGCAAAAATGGACAAACCATGGGAT
AGAGGAATGTTATTGTAGCAAGGGGTATGTGAGAGAACGACCTTATGCTCCCCAGGCTCA
GGTAGCATCTCCTCAACTTGAGTACCTGCAGGT
■■Homology search results ■■ -
sp_hit_id Q61644
Definition sp|Q61644|PACN1_MOUSE Protein kinase C and casein kinase substrate in neurons protein 1 OS=Mus musculus
Align length 97
Score (bit) 32.7
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912733|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_C05.
         (633 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q61644|PACN1_MOUSE Protein kinase C and casein kinase substra...    33   1.6  
sp|Q9Z0W5|PACN1_RAT Protein kinase C and casein kinase substrate...    32   2.1  
sp|Q5R411|PACN1_PONAB Protein kinase C and casein kinase substra...    32   2.7  
sp|Q9BY11|PACN1_HUMAN Protein kinase C and casein kinase substra...    32   2.7  
sp|Q480H5|SYM_COLP3 Methionyl-tRNA synthetase OS=Colwellia psych...    30   7.9  
sp|P09986|HLYDC_ECOLX Hemolysin secretion protein D, chromosomal...    30   7.9  

>sp|Q61644|PACN1_MOUSE Protein kinase C and casein kinase substrate
           in neurons protein 1 OS=Mus musculus GN=Pacsin1 PE=1
           SV=1
          Length = 441

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
 Frame = +2

Query: 2   ECR-DFESMEEVFDEFIEEFSQ-----MGIAHNTVSQIHEFKQKEGESVQKTALRLKRHI 163
           +CR D +  +E +++ +E+  +     M        Q  +F++K    +++  L +KRH+
Sbjct: 194 KCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRHL 253

Query: 164 KFCPVEELSTQSKLMLIFIQGIRNANLQKDLHMKRST 274
                 E S+   +     Q IR A+ Q+DL   RST
Sbjct: 254 NLA---ENSSYMHVYRELEQAIRGADAQEDLRWFRST 287


>sp|Q9Z0W5|PACN1_RAT Protein kinase C and casein kinase substrate in
           neurons protein 1 OS=Rattus norvegicus GN=Pacsin1 PE=1
           SV=1
          Length = 441

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
 Frame = +2

Query: 2   ECR-DFESMEEVFDEFIEEFSQ-----MGIAHNTVSQIHEFKQKEGESVQKTALRLKRHI 163
           +CR D +  +E +++ +E+  +     M        Q  +F++K    +++  L +KRH+
Sbjct: 194 KCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRHL 253

Query: 164 KFCPVEELSTQSKLMLIFIQGIRNANLQKDLHMKRST 274
                 E S+   +     Q IR A+ Q+DL   RST
Sbjct: 254 NLA---ENSSYIHVYRELEQAIRGADAQEDLRWFRST 287


>sp|Q5R411|PACN1_PONAB Protein kinase C and casein kinase substrate
           in neurons protein 1 OS=Pongo abelii GN=Pacsin1 PE=2
           SV=1
          Length = 444

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
 Frame = +2

Query: 8   RDFESMEEVFDEFIEEFSQ-----MGIAHNTVSQIHEFKQKEGESVQKTALRLKRHIKFC 172
           +D +  +E +++ +E+  +     M        Q  +F++K    +++  L +KRH+   
Sbjct: 200 QDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLA 259

Query: 173 PVEELSTQSKLMLIFIQGIRNANLQKDLHMKRST 274
              E S+   +     Q IR A+ Q+DL   RST
Sbjct: 260 ---ENSSYIHVYRELEQAIRGADAQEDLRWFRST 290


>sp|Q9BY11|PACN1_HUMAN Protein kinase C and casein kinase substrate
           in neurons protein 1 OS=Homo sapiens GN=PACSIN1 PE=1
           SV=1
          Length = 444

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
 Frame = +2

Query: 8   RDFESMEEVFDEFIEEFSQ-----MGIAHNTVSQIHEFKQKEGESVQKTALRLKRHIKFC 172
           +D +  +E +++ +E+  +     M        Q  +F++K    +++  L +KRH+   
Sbjct: 200 QDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLA 259

Query: 173 PVEELSTQSKLMLIFIQGIRNANLQKDLHMKRST 274
              E S+   +     Q IR A+ Q+DL   RST
Sbjct: 260 ---ENSSYIHVYRELEQAIRGADAQEDLRWFRST 290


>sp|Q480H5|SYM_COLP3 Methionyl-tRNA synthetase OS=Colwellia
           psychrerythraea (strain 34H / ATCC BAA-681) GN=metG PE=3
           SV=1
          Length = 713

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 17  ESMEEVFDEFIEEFSQMGIAHNTVSQIHEFKQKEGESVQKTALRLKRHIKFCPVEELSTQ 196
           E +  V +E I+EFS   I+ +     H  + KE       AL  K HIK   + +L   
Sbjct: 88  EMINGVREERIKEFSDFHISFDNYHTTHSDENKEYSEKIYNALHAKGHIKTRIISQLYDP 147

Query: 197 SKLMLI---FIQG 226
            K M +   F++G
Sbjct: 148 EKGMFLADRFVKG 160


>sp|P09986|HLYDC_ECOLX Hemolysin secretion protein D, chromosomal
           OS=Escherichia coli GN=hlyD PE=1 SV=1
          Length = 478

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +2

Query: 89  SQIHEFKQKEGESVQKTALRLKRHIKFCPVEELSTQSKLMLIFIQGIRNANLQKDLHMKR 268
           S + E   KEGESV+K  + LK        + L TQS L+   ++ IR   L + + + +
Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQIRYQILSRSIELNK 164
tr_hit_id A0CLP5
Definition tr|A0CLP5|A0CLP5_PARTE Chromosome undetermined scaffold_20, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 92
Score (bit) 37.4
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912733|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_C05.
         (633 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0CLP5|A0CLP5_PARTE Chromosome undetermined scaffold_20, whol...    37   0.76 
tr|B4W7X8|B4W7X8_9CAUL Translation elongation factor Ts OS=Brevu...    35   2.9  
tr|A4VC99|A4VC99_9LACT Transposase AB of ISLL6 OS=Lactococcus la...    35   4.9  
tr|Q17C75|Q17C75_AEDAE Putative uncharacterized protein OS=Aedes...    35   4.9  
tr|A0CZZ3|A0CZZ3_PARTE Chromosome undetermined scaffold_32, whol...    34   6.4  
tr|A2F841|A2F841_TRIVA Putative uncharacterized protein OS=Trich...    34   8.3  
tr|Q38C57|Q38C57_9TRYP Putative uncharacterized protein OS=Trypa...    34   8.4  

>tr|A0CLP5|A0CLP5_PARTE Chromosome undetermined scaffold_20, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00008261001 PE=4 SV=1
          Length = 584

 Score = 37.4 bits (85), Expect = 0.76
 Identities = 21/92 (22%), Positives = 44/92 (47%)
 Frame = +2

Query: 5   CRDFESMEEVFDEFIEEFSQMGIAHNTVSQIHEFKQKEGESVQKTALRLKRHIKFCPVEE 184
           C DFE +   F+E+I+E  +   +   ++Q+ + +QKE   +Q+    LK  +  CP   
Sbjct: 222 CCDFEEVFNKFEEYIKEIEKCKQSIEDLNQVVQNQQKEIAKLQQKNQTLKSQLLSCPPTA 281

Query: 185 LSTQSKLMLIFIQGIRNANLQKDLHMKRSTML 280
            S + +   I ++  +     ++L  K   ++
Sbjct: 282 RSIEPEQQQILVKDPKEQKTIENLKAKNQKLI 313


>tr|B4W7X8|B4W7X8_9CAUL Translation elongation factor Ts
           OS=Brevundimonas sp. BAL3 GN=BBAL3_1416 PE=4 SV=1
          Length = 313

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +2

Query: 11  DFESMEEVFDEFIEEFSQMGIAHNTVSQIHEFKQKEGESVQ 133
           DF +  E+F    + F+Q+G+ H+TV  +H  + + G++VQ
Sbjct: 85  DFVARNELFQNAAKSFAQLGLEHHTVEALHGAELEAGKTVQ 125


>tr|A4VC99|A4VC99_9LACT Transposase AB of ISLL6 OS=Lactococcus
           lactis GN=tnpA2B2-ISLL6 PE=4 SV=1
          Length = 379

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
 Frame = +2

Query: 5   CRDFESMEEVFDEFIEEFSQMGIAHNTV---SQIHEFKQKEGESVQKTALRLKR-HIKFC 172
           C+D+   +  F ++I++FSQ+ +  NTV    QI E +++  +   K+ L+    HI   
Sbjct: 29  CKDYGVSQTAFSKWIKQFSQVKLEDNTVMTAKQIQELQKRNAQRRGKSDLKKSECHI--- 85

Query: 173 PVEELSTQSKLMLIFIQGIRNAN--LQKDLHMKRSTMLN*LTK 295
                  Q +L  I+     +    L + LH+ RST  N + K
Sbjct: 86  ---HAKLQVRLKAIYRLRFEHTTVMLCRVLHVNRSTYYNFINK 125


>tr|Q17C75|Q17C75_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL004656 PE=4 SV=1
          Length = 247

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +2

Query: 23  MEEVFDEFIEEFSQMGIAH-NTVSQIHEF---KQKEGESVQKTALRLKRHIKFCPVEELS 190
           + + + + +E+F  +   + N  ++ H     KQ+EGES+   A+ L+  ++ C V   +
Sbjct: 79  VNKTYAQIVEKFKILHEENKNVFAERHRLITRKQEEGESLDDFAIDLQNIVEHCSVSAET 138

Query: 191 TQSKLMLIFIQGIRNANLQKDLHMKRSTMLN 283
             + +  +F+ GIRN   ++ +       LN
Sbjct: 139 EATLVQSVFVAGIRNDKTRESMLRDADHSLN 169


>tr|A0CZZ3|A0CZZ3_PARTE Chromosome undetermined scaffold_32, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00011934001 PE=4 SV=1
          Length = 577

 Score = 34.3 bits (77), Expect = 6.4
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
 Frame = +2

Query: 5   CRDFESMEEVFDEFIEEFSQMGIAHNTVSQIHEFKQKEGESVQKTALRLKRHIKFCPVEE 184
           C DFE +   F E+I+E          ++ + + +QKE   VQ+    LK  +  CP   
Sbjct: 222 CGDFEEVHNKFQEYIKEIENNKQIIEDMNYLVQNQQKEIAKVQQKNQSLKSQLLSCPPTA 281

Query: 185 LSTQSKLMLIF----------------IQGIRNANLQKDLHMKRSTMLN*LT--KEALY 307
            S + +   I                 IQGI+  N Q+ L MK++   + LT  + +LY
Sbjct: 282 RSIEPEQQQIIIKDPQELKTIESLKAQIQGIKEEN-QRILGMKQAQYESQLTALRRSLY 339


>tr|A2F841|A2F841_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_242820 PE=4 SV=1
          Length = 199

 Score = 33.9 bits (76), Expect = 8.3
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +2

Query: 11  DFESMEEVFDEFIEEFSQMGIAHNTVSQIHEFKQKEGESVQKTALRLKRHIKFCPVEELS 190
           +FE++E +FD+  +E     +  NT+ Q  E   +E +      +++++  K  P+EE+ 
Sbjct: 122 EFENVESLFDDVEKELQNRILQQNTMKQEIELHAQERDFYLSKLMQIEKLTKKYPIEEVG 181

Query: 191 T 193
           T
Sbjct: 182 T 182


>tr|Q38C57|Q38C57_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb10.70.5990 PE=4 SV=1
          Length = 433

 Score = 33.9 bits (76), Expect = 8.4
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -1

Query: 528 VHFCSIAHHLGCLAQG---LAYRLIFFNTSSTSCSWLIATSSFGAVLADLLPLCCE 370
           VHF      LGC+AQG   L  RL    TSS     +  +  F     D  P+CCE
Sbjct: 231 VHFVRWVPSLGCVAQGGEDLTVRLWDVRTSSDGMKAIDLSLGFTMACIDYHPICCE 286