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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912746
Clone id YMU001_000022_D08
Library
Length 571
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGATCTCAAAATTCTTTATATAATCTTCAAAGCGATCCCTTTGAGTCCTTCGAGATGATC
CAGACATAGCCTCAAGTGAGGGCTTCCATAATTCGCTCAGATCCCCTTTTGGCACTCTCT
CAGCTTTGAAACTCTCCATTAGTCTTTCTAGACTTGCTGCTTTCTGTGACTTTGTTTCCT
TTACTGGCACCTGTAGAGTTTCTTTCTTCCCCTTCTTGAGCTGTGGCGGCTCTTCTAGCA
CTGTCTCTAAACGGTGCTTCAACCTTGTGGCTACCCTTAAGGCCTTAGGAAGCTCTTCTT
CTTTGTCTTCCTTCAGCTTGAGCCAATCATTTCGGGAGGGAGGTAGAGGTCAATTTCCCT
TGGCATGCAATGCTCCATAGATGACTTTGGTTATCAACTCACCCGGTACAATATAAGTGG
GATTTTTGGTCCCCATTTTCACAAGGTTGTCGTGAATGTAAGCGGCATAGTTTATCTCCC
TCGGGCGGCTCTTCTGCATCGCCCAAGTGAAAGGGGTGGCAATAGCTCCAGATGGCATCC
TGTATTTCTATGGCCGCTTGGTACATATGTG
■■Homology search results ■■ -
sp_hit_id P38845
Definition sp|P38845|YHU6_YEAST Uncharacterized protein YHR146W OS=Saccharomyces cerevisiae
Align length 57
Score (bit) 31.6
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912746|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_D08.
         (571 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38845|YHU6_YEAST Uncharacterized protein YHR146W OS=Saccharo...    32   2.9  
sp|Q01027|VG41_SHV21 Uncharacterized gene 41 protein OS=Saimirii...    32   2.9  
sp|Q1MTR1|IRC3_SCHPO Putative mitochondrial ATP-dependent helica...    32   2.9  
sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 pr...    31   3.8  
sp|Q9UZC8|RAD50_PYRAB DNA double-strand break repair rad50 ATPas...    31   3.8  
sp|Q7W0K0|SYR_BORPE Arginyl-tRNA synthetase OS=Bordetella pertus...    31   4.9  
sp|Q7WDQ0|SYR_BORBR Arginyl-tRNA synthetase OS=Bordetella bronch...    31   4.9  
sp|P46582|YLB8_CAEEL Uncharacterized protein C34E10.8 OS=Caenorh...    30   6.4  
sp|P93736|SYV_ARATH Valyl-tRNA synthetase OS=Arabidopsis thalian...    30   6.5  
sp|Q6NU13|SPT2_XENLA Protein SPT2 homolog OS=Xenopus laevis GN=s...    30   8.4  
sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydro...    30   8.5  
sp|Q0BK70|IF2_FRATO Translation initiation factor IF-2 OS=Franci...    30   8.5  
sp|Q2A1G8|IF2_FRATH Translation initiation factor IF-2 OS=Franci...    30   8.5  
sp|A7NEI8|IF2_FRATF Translation initiation factor IF-2 OS=Franci...    30   8.5  

>sp|P38845|YHU6_YEAST Uncharacterized protein YHR146W
           OS=Saccharomyces cerevisiae GN=YHR146W PE=1 SV=1
          Length = 465

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = -1

Query: 253 RLETVLEEPPQLKKGKKETLQVPVKETKSQKAASLERLMESFKAERVPKGDLSELWK 83
           R ET  E+ P  K+ KK+T++ P K+T S  ++S E   E  K +    G L +L+K
Sbjct: 412 RSETSKEKKPSAKEVKKQTVKAPKKQTASPLSSSTE---EPKKKKTGFFGKLKKLFK 465


>sp|Q01027|VG41_SHV21 Uncharacterized gene 41 protein OS=Saimiriine
           herpesvirus 2 (strain 11) GN=41 PE=4 SV=1
          Length = 161

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
 Frame = -1

Query: 571 HICTKRP*KYRMPSGAIAT---------PFTWAMQKSRPREINYAAYIHDNLVKMGTKNP 419
           H  T +P K  +PS  +A          P  W  + + P  INY  YIH   + +  K P
Sbjct: 81  HFLTSKPQKPNIPSDCVAPTLFFFTTDGPLCWHQKLNVPLNINYEEYIH-KAITVFEKVP 139

Query: 418 TYIVPGELITKV 383
           +  +  ++  K+
Sbjct: 140 SLTINKDMYIKI 151


>sp|Q1MTR1|IRC3_SCHPO Putative mitochondrial ATP-dependent helicase
           irc3 OS=Schizosaccharomyces pombe GN=irc3 PE=3 SV=2
          Length = 606

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -1

Query: 541 RMPSGAIATPFTWAMQKSRPREINYAAYIHDNLVKMGTKNPTYIVPGELITKVIYG 374
           + P   I+    W M+ +  R+IN+   +  + +K+  K  T  V  ++ITKVIYG
Sbjct: 522 KTPRSLISRKAVWRMRPASVRQINF---LKKSNLKLDEKLLTAGVAADMITKVIYG 574


>sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 protein
            OS=Mus musculus GN=Tnrc18 PE=1 SV=2
          Length = 2878

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -1

Query: 220  LKKGKKETLQVPVKETKSQKAASLERLMESFKAERVPKGDLSELWKPSLEAMSGSSRRTQ 41
            L KG   +L+ P +E K ++A+   ++   F+A   PK     +  P    +S  S  T 
Sbjct: 1609 LAKGLGLSLK-PSREGKHKRASKARKMEGGFQARGQPKS----VHSPFASEVSSQSYNTD 1663

Query: 40   RDRFEDYIKN 11
             D  ED++KN
Sbjct: 1664 SDEDEDFLKN 1673


>sp|Q9UZC8|RAD50_PYRAB DNA double-strand break repair rad50 ATPase
           OS=Pyrococcus abyssi GN=rad50 PE=3 SV=1
          Length = 880

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
 Frame = -1

Query: 262 LKHRLETVLEEPPQLK--KGKKETLQVPVKETKSQKAASLERLMESFKAERVPKGDLSEL 89
           ++  LE V E   +L+  KGK   L++ V++ K +K    E++++  ++    K  +SEL
Sbjct: 223 IRGELEKVRENVKELESIKGKISELKIQVEKLKGRKKGLEEKIVQIERSIEEKKAKISEL 282

Query: 88  WK-----PSLEAMSGSSRRTQ--RDRFEDYIKNFE 5
            +     P L+      R+ +  RD +E  ++  E
Sbjct: 283 EEIVKDIPKLQEKEKEYRKLKGFRDEYESKLRRLE 317


>sp|Q7W0K0|SYR_BORPE Arginyl-tRNA synthetase OS=Bordetella pertussis
           GN=argS PE=3 SV=2
          Length = 560

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 26/109 (23%), Positives = 46/109 (42%)
 Frame = -3

Query: 515 PFHLGDAEEPPEGDKLCRLHSRQPCENGDQKSHLYCTG*VDNQSHLWSIACQGKLTSTSL 336
           P H+G A +   GD +CRL+     +   +  +      +DN +   S+  +G+  +   
Sbjct: 134 PLHVGHARQAALGDAICRLYDASGWDVTREFYYNDAGNQIDNLA--ISVQARGRGIAPDA 191

Query: 335 PK*LAQAEGRQRRRAS*GLKGSHKVEAPFRDSARRAATAQEGEERNSTG 189
           P   A            G KG + VE     +AR++  A +G+   +TG
Sbjct: 192 PDYPAD-----------GYKGDYIVEIARDFAARKSVQASDGQPVTATG 229


>sp|Q7WDQ0|SYR_BORBR Arginyl-tRNA synthetase OS=Bordetella
           bronchiseptica GN=argS PE=3 SV=1
          Length = 561

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 26/109 (23%), Positives = 46/109 (42%)
 Frame = -3

Query: 515 PFHLGDAEEPPEGDKLCRLHSRQPCENGDQKSHLYCTG*VDNQSHLWSIACQGKLTSTSL 336
           P H+G A +   GD +CRL+     +   +  +      +DN +   S+  +G+  +   
Sbjct: 134 PLHVGHARQAALGDAICRLYDASGWDVTREFYYNDAGNQIDNLA--ISVQARGRGIAPDA 191

Query: 335 PK*LAQAEGRQRRRAS*GLKGSHKVEAPFRDSARRAATAQEGEERNSTG 189
           P   A            G KG + VE     +AR++  A +G+   +TG
Sbjct: 192 PDYPAD-----------GYKGDYIVEIARDFAARKSVQASDGQPVTATG 229


>sp|P46582|YLB8_CAEEL Uncharacterized protein C34E10.8
           OS=Caenorhabditis elegans GN=C34E10.8 PE=2 SV=2
          Length = 1024

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 278 KGSHKVEAP-FRDSARRAATAQEGEERNSTGASKGNKVTESSKSRKTNGEFQS*ESAKRG 102
           KG  K  AP  ++S++ A  AQ+G    ST   +  K +ESS   +++  F +   A   
Sbjct: 779 KGGRKAGAPGAKESSKAAGGAQKGTSAASTSVPEPTKSSESSVDPQSDVSFSNPSPAPEV 838

Query: 101 SERIMEA 81
            E++  A
Sbjct: 839 IEKVAPA 845


>sp|P93736|SYV_ARATH Valyl-tRNA synthetase OS=Arabidopsis thaliana
           GN=VALRS PE=1 SV=2
          Length = 1108

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -1

Query: 223 QLKKGKKETLQVPVKETKSQKAASLERLMESFKAERVPKGDLSELWKPSLEAMSGSSRRT 44
           +L++ KK+  +   KE K QKA   ERL E  KA++   G       P   A   S R  
Sbjct: 57  ELERKKKKEEKAKEKELKKQKALEKERLAE-LKAKQAKDGTN----VPKKSAKKSSKRDA 111

Query: 43  QRDRFEDYI 17
             +  ED++
Sbjct: 112 SEENPEDFV 120


>sp|Q6NU13|SPT2_XENLA Protein SPT2 homolog OS=Xenopus laevis
           GN=spty2d1 PE=2 SV=1
          Length = 800

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -3

Query: 281 LKGSHKVEAPFRDSARRAATAQEGEERNSTGASKGNKVTESSKSRKTNGEFQS*ESAKR 105
           LKGSH VE    ++++ ++T Q G  R S+  ++  +    S     + +F +  S+ +
Sbjct: 245 LKGSHSVEKRSHENSKSSSTEQNGTFRKSSSDNRSREEKSGSVFHTKDSKFPTKSSSAK 303
tr_hit_id Q9HUT6
Definition tr|Q9HUT6|Q9HUT6_PSEAE Putative uncharacterized protein OS=Pseudomonas aeruginosa
Align length 63
Score (bit) 35.4
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912746|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_D08.
         (571 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9HUT6|Q9HUT6_PSEAE Putative uncharacterized protein OS=Pseud...    35   2.2  
tr|Q02FE1|Q02FE1_PSEAB Putative uncharacterized protein OS=Pseud...    35   2.2  
tr|B7V1U0|B7V1U0_PSEAE Putative uncharacterized protein OS=Pseud...    35   2.2  
tr|A3L315|A3L315_PSEAE Putative uncharacterized protein OS=Pseud...    35   2.2  
tr|A3LJN8|A3LJN8_PSEAE Putative uncharacterized protein OS=Pseud...    34   5.0  
tr|Q4DNW9|Q4DNW9_TRYCR Putative uncharacterized protein (Fragmen...    34   5.0  
tr|Q4DPV8|Q4DPV8_TRYCR Putative uncharacterized protein OS=Trypa...    34   5.0  
tr|A6VCY5|A6VCY5_PSEA7 Putative uncharacterized protein OS=Pseud...    34   6.5  
tr|Q4D158|Q4D158_TRYCR Putative uncharacterized protein OS=Trypa...    34   6.5  
tr|B6M1G0|B6M1G0_BRAFL Putative uncharacterized protein OS=Branc...    34   6.6  
tr|Q4XW84|Q4XW84_PLACH Cdc2-like protein kinase, putative OS=Pla...    33   8.5  
tr|A5K3R5|A5K3R5_PLAVI Putative uncharacterized protein OS=Plasm...    33   8.5  
tr|Q3B423|Q3B423_PELLD Ornithine carbamoyltransferase OS=Pelodic...    33   8.6  
tr|B6M1E3|B6M1E3_BRAFL Putative uncharacterized protein OS=Branc...    33   8.6  

>tr|Q9HUT6|Q9HUT6_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa GN=PA4877 PE=4 SV=1
          Length = 135

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = -3

Query: 320 QAEGRQRRRAS*GLKGSHKVEAPFRDSARRAATAQEGEERNSTGASKGNKVTESSKSRKT 141
           Q+ G +R+  S   K      A  +DSA RAA A+ G   N   AS+G +   +S S  T
Sbjct: 45  QSGGGERKGGSGRAKSETAKRADRKDSAHRAAQARSGRPANRGSASRGKRQGSTSVSEMT 104

Query: 140 NGE 132
             E
Sbjct: 105 REE 107


>tr|Q02FE1|Q02FE1_PSEAB Putative uncharacterized protein
           OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
           GN=PA14_64490 PE=4 SV=1
          Length = 135

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = -3

Query: 320 QAEGRQRRRAS*GLKGSHKVEAPFRDSARRAATAQEGEERNSTGASKGNKVTESSKSRKT 141
           Q+ G +R+  S   K      A  +DSA RAA A+ G   N   AS+G +   +S S  T
Sbjct: 45  QSGGGERKGGSGRAKSETAKRADRKDSAHRAAQARSGRPANRGSASRGKRQGSTSVSEMT 104

Query: 140 NGE 132
             E
Sbjct: 105 REE 107


>tr|B7V1U0|B7V1U0_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa LESB58 GN=PLES_52631 PE=4 SV=1
          Length = 135

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = -3

Query: 320 QAEGRQRRRAS*GLKGSHKVEAPFRDSARRAATAQEGEERNSTGASKGNKVTESSKSRKT 141
           Q+ G +R+  S   K      A  +DSA RAA A+ G   N   AS+G +   +S S  T
Sbjct: 45  QSGGGERKGGSGRAKSETAKRADRKDSAHRAAQARSGRPANRGSASRGKRQGSTSVSEMT 104

Query: 140 NGE 132
             E
Sbjct: 105 REE 107


>tr|A3L315|A3L315_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa C3719 GN=PACG_04543 PE=4 SV=1
          Length = 135

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = -3

Query: 320 QAEGRQRRRAS*GLKGSHKVEAPFRDSARRAATAQEGEERNSTGASKGNKVTESSKSRKT 141
           Q+ G +R+  S   K      A  +DSA RAA A+ G   N   AS+G +   +S S  T
Sbjct: 45  QSGGGERKGGSGRAKSETAKRADRKDSAHRAAQARSGRPANRGSASRGKRQGSTSVSEMT 104

Query: 140 NGE 132
             E
Sbjct: 105 REE 107


>tr|A3LJN8|A3LJN8_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa 2192 GN=PA2G_05075 PE=4 SV=1
          Length = 135

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = -3

Query: 320 QAEGRQRRRAS*GLKGSHKVEAPFRDSARRAATAQEGEERNSTGASKGNKVTESSKSRKT 141
           Q+ G +R+  S   K      A  +DSA RAA A+ G   N   AS+G +    S S  T
Sbjct: 45  QSGGGERKGGSGRAKSETAKRADRKDSAHRAAQARSGRPANRGSASRGKRQGSISVSEMT 104

Query: 140 NGE 132
             E
Sbjct: 105 REE 107


>tr|Q4DNW9|Q4DNW9_TRYCR Putative uncharacterized protein (Fragment)
           OS=Trypanosoma cruzi GN=Tc00.1047053509099.170 PE=4 SV=1
          Length = 138

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 24/76 (31%), Positives = 42/76 (55%)
 Frame = -3

Query: 320 QAEGRQRRRAS*GLKGSHKVEAPFRDSARRAATAQEGEERNSTGASKGNKVTESSKSRKT 141
           +A G+ RRR +  L+ + +++A  RD  RR     EGEE+ ++   + ++  E S SRK+
Sbjct: 40  EAVGKARRRRNELLENADEMQATTRDRRRRPG--GEGEEQAASENPESHQKPEESSSRKS 97

Query: 140 NGEFQS*ESAKRGSER 93
           +      E+ K+  ER
Sbjct: 98  S------ETKKKSRER 107


>tr|Q4DPV8|Q4DPV8_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053510877.20 PE=4 SV=1
          Length = 582

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -1

Query: 238 LEEPPQLKKGKKETLQVPVKETKSQKAASLERLMESFKAERVPKGDLSELWKPSLEAMSG 59
           L E  + K+  +ETL   + + + +   +L +  E  +A       L E WK +LEAM  
Sbjct: 189 LAELEEAKRAMEETLMRQLHDREREFCEALGKSQEELRASEAENKRLEEEWKRALEAMKR 248

Query: 58  SSRRTQR 38
             RR  +
Sbjct: 249 ERRRLDK 255


>tr|A6VCY5|A6VCY5_PSEA7 Putative uncharacterized protein
           OS=Pseudomonas aeruginosa (strain PA7) GN=PSPA7_5599
           PE=4 SV=1
          Length = 135

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = -3

Query: 320 QAEGRQRRRAS*GLKGSHKVEAPFRDSARRAATAQEGEERNSTGASKGNKVTESSKSRKT 141
           Q+ G +R+  S   K      A  +DSA RAA  + G   N   AS+G +   ++ S  T
Sbjct: 45  QSGGGERKGGSGRAKSETAKRAERKDSAHRAAQTRSGHPANRGSASRGKRQGSTAVSEMT 104

Query: 140 NGEFQS*ESAK--RGSERIMEA 81
             E       +  RG  R+ +A
Sbjct: 105 RDELMQLARKRDIRGRSRMRKA 126


>tr|Q4D158|Q4D158_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053507209.20 PE=4 SV=1
          Length = 263

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 23/76 (30%), Positives = 42/76 (55%)
 Frame = -3

Query: 320 QAEGRQRRRAS*GLKGSHKVEAPFRDSARRAATAQEGEERNSTGASKGNKVTESSKSRKT 141
           +A G+ RRR +  L+ + +++   RD  RR     EGEE+ ++ + + ++  E S SRK+
Sbjct: 165 EAVGKARRRRNELLENADEMQVTTRDRRRRPG--GEGEEQAASESPESHQKPEESSSRKS 222

Query: 140 NGEFQS*ESAKRGSER 93
           +      E+ K+  ER
Sbjct: 223 S------ETKKKSRER 232


>tr|B6M1G0|B6M1G0_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_121538 PE=4 SV=1
          Length = 1465

 Score = 33.9 bits (76), Expect = 6.6
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = -1

Query: 250 LETVLEEPPQLKKGKKETLQVPVKETK-SQKAASLERLMESFKAERVPKGDLSELWKPS- 77
           ++ V+E+PP+L K ++E +Q  +K+ +  QKAA  E L +  + E+  K    E  + + 
Sbjct: 94  VKPVMEKPPKLSKEEREQIQAEIKKKRDEQKAAMKEELKKKKEEEKEIKRKQKEAERVAR 153

Query: 76  LEAMSGSSRRTQRDR 32
           +EAM       +  R
Sbjct: 154 MEAMRKQMEEMKEQR 168