NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912750
Clone id YMU001_000022_E01
Library
Length 440
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTTGCACATTTGGTGCGTGCTTTTTGAAATGAATGTAAACGAATATAAGGCCATAAATG
GTGAGGCCTGAACATACTATTTAACATGGCACTCAAAAGATGGTTGTGGGGTTGTGTGTA
AAGAGTAATATTCCAAAGAAACACTTACTGCAGCAGCAACAAACCCACCTTGCAGTAAGA
TCTTACTCCACAGCTGCATGTCTCTAGCAGATCAACTCCGACTTTGGACGAAGCATCAAC
CCTCGGAGATGATGTGGACGTGTAAAACATCCACCAGTTTTATGCCTACAAAACCCAGGC
CCAAGCTGCATAGCTTGATGAATAGAATGGCATTTAAAGCTATCGATCTCCTTGCAAACG
TGATAATGCTCCGGCAATATCATTCTTCATACCTTCAAGCAACTTGTAACGGCGCCGGGT
GATCCTCCTTGCTGGGTCAG
■■Homology search results ■■ -
sp_hit_id Q9XAR0
Definition sp|Q9XAR0|NUOG_STRCO NADH-quinone oxidoreductase subunit G OS=Streptomyces coelicolor
Align length 47
Score (bit) 37.4
E-value 0.027
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912750|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_E01.
         (440 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9XAR0|NUOG_STRCO NADH-quinone oxidoreductase subunit G OS=St...    37   0.027
sp|Q7N7A4|GSH1_PHOLL Glutamate--cysteine ligase OS=Photorhabdus ...    32   0.88 
sp|P26102|HEMA_I76AL Hemagglutinin OS=Influenza A virus (strain ...    31   2.6  
sp|P26099|HEMA_I73A4 Hemagglutinin OS=Influenza A virus (strain ...    30   3.4  
sp|P26095|HEMA_I73A1 Hemagglutinin OS=Influenza A virus (strain ...    30   3.4  
sp|P26098|HEMA_I66A2 Hemagglutinin OS=Influenza A virus (strain ...    30   3.4  
sp|P26094|HEMA_I63A0 Hemagglutinin OS=Influenza A virus (strain ...    30   4.4  
sp|P26101|HEMA_I56A3 Hemagglutinin OS=Influenza A virus (strain ...    30   4.4  
sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein ...    30   4.4  
sp|P26100|HEMA_I77A9 Hemagglutinin OS=Influenza A virus (strain ...    30   5.7  
sp|P26097|HEMA_I64A6 Hemagglutinin OS=Influenza A virus (strain ...    30   5.7  
sp|P26096|HEMA_I64A5 Hemagglutinin OS=Influenza A virus (strain ...    30   5.7  
sp|P73257|ARLY_SYNY3 Argininosuccinate lyase OS=Synechocystis sp...    30   5.7  
sp|Q2GSV2|PAN2_CHAGB PAB-dependent poly(A)-specific ribonuclease...    29   7.5  
sp|P26103|HEMA_I72A7 Hemagglutinin OS=Influenza A virus (strain ...    29   7.5  
sp|Q7VEK0|ARLY_PROMA Argininosuccinate lyase OS=Prochlorococcus ...    29   7.5  
sp|Q75N90|FBN3_HUMAN Fibrillin-3 OS=Homo sapiens GN=FBN3 PE=2 SV=2     29   9.8  
sp|Q6NS59|F135A_MOUSE Protein FAM135A OS=Mus musculus GN=Fam135a...    29   9.8  
sp|A0AKJ8|ARLY_LISW6 Argininosuccinate lyase OS=Listeria welshim...    29   9.8  
sp|Q8Y5H1|ARLY_LISMO Argininosuccinate lyase OS=Listeria monocyt...    29   9.8  
sp|Q71XS3|ARLY_LISMF Argininosuccinate lyase OS=Listeria monocyt...    29   9.8  
sp|Q929S8|ARLY_LISIN Argininosuccinate lyase OS=Listeria innocua...    29   9.8  

>sp|Q9XAR0|NUOG_STRCO NADH-quinone oxidoreductase subunit G
           OS=Streptomyces coelicolor GN=nuoG PE=3 SV=1
          Length = 843

 Score = 37.4 bits (85), Expect = 0.027
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -1

Query: 299 PGFCRHKTGGCFTRPHHLRGLMLRPKSELIC*RHAAVE*DLTARWVC 159
           P  C H +GGC TR  H RG ++R        R AA E ++   W+C
Sbjct: 242 PSVCEHCSGGCATRTDHRRGKVMR--------RLAANEPEVNEEWIC 280


>sp|Q7N7A4|GSH1_PHOLL Glutamate--cysteine ligase OS=Photorhabdus
           luminescens subsp. laumondii GN=gshA PE=3 SV=1
          Length = 519

 Score = 32.3 bits (72), Expect = 0.88
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 367 IITFARRSIALNAILFIKLCSLGLGFVGIKLVDVLHVHIISE 242
           I TF   S+ L+A +  K+ S G+G  G++L D  H  +ISE
Sbjct: 436 IATFDDSSLTLSARVLEKMKSQGIGGFGLELADEYHQQLISE 477


>sp|P26102|HEMA_I76AL Hemagglutinin OS=Influenza A virus (strain
           A/Equine/Sao Paulo/1/1976 H7N7) GN=HA PE=3 SV=1
          Length = 570

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 186 LHSCMSLADQLRLWTKHQPSEMMWTCKTSTSFMPTK-PRPKLHSLMNRMAFKAIDLLANV 362
           +H   S A+Q RL+        +W+ K   SF P   PRP+++    R+ F  + L  N 
Sbjct: 191 IHHSGSTAEQTRLYGSGNKLVTVWSSKYQRSFAPNPGPRPQINGQSGRIDFYWLMLDPND 250

Query: 363 IMLRQYHSSYL 395
            +   ++ +++
Sbjct: 251 TVTFSFNGAFI 261


>sp|P26099|HEMA_I73A4 Hemagglutinin OS=Influenza A virus (strain
           A/Equine/London/1416/1973 H7N7) GN=HA PE=3 SV=1
          Length = 570

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 186 LHSCMSLADQLRLWTKHQPSEMMWTCKTSTSFMPTK-PRPKLHSLMNRMAFKAIDLLANV 362
           +H   S A+Q RL+        +W+ K   SF P   PRP+++    R+ F  + L  N 
Sbjct: 191 IHHSGSTAEQTRLYGSGNKLITVWSSKYQQSFAPNPGPRPQINGQSGRIDFYWLMLDPND 250

Query: 363 IMLRQYHSSYL 395
            +   ++ +++
Sbjct: 251 TVTFSFNGAFI 261


>sp|P26095|HEMA_I73A1 Hemagglutinin OS=Influenza A virus (strain
           A/Equine/Cambridge/1/1973 H7N7) GN=HA PE=3 SV=1
          Length = 570

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 186 LHSCMSLADQLRLWTKHQPSEMMWTCKTSTSFMPTK-PRPKLHSLMNRMAFKAIDLLANV 362
           +H   S A+Q RL+        +W+ K   SF P   PRP+++    R+ F  + L  N 
Sbjct: 191 IHHSGSTAEQTRLYGSGNKLITVWSSKYQQSFAPNPGPRPQINGQSGRIDFYWLMLDPND 250

Query: 363 IMLRQYHSSYL 395
            +   ++ +++
Sbjct: 251 TVTFSFNGAFI 261


>sp|P26098|HEMA_I66A2 Hemagglutinin OS=Influenza A virus (strain
           A/Equine/Lexington/1/1966 H7N7) GN=HA PE=3 SV=1
          Length = 570

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 186 LHSCMSLADQLRLWTKHQPSEMMWTCKTSTSFMPTK-PRPKLHSLMNRMAFKAIDLLANV 362
           +H   S A+Q RL+        +W+ K   SF P   PRP+++    R+ F  + L  N 
Sbjct: 191 IHHSGSTAEQTRLYGSGNKLITVWSSKYQQSFAPNPGPRPQINGQSGRIDFYWLMLDPND 250

Query: 363 IMLRQYHSSYL 395
            +   ++ +++
Sbjct: 251 TVTFSFNGAFI 261


>sp|P26094|HEMA_I63A0 Hemagglutinin OS=Influenza A virus (strain
           A/Equine/Cambridge/1/1963 H7N7) GN=HA PE=3 SV=1
          Length = 570

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 186 LHSCMSLADQLRLWTKHQPSEMMWTCKTSTSFMPTK-PRPKLHSLMNRMAFKAIDLLANV 362
           +H   S  +Q RL+        +W+ K   SF+P   PRP+++    R+ F  + L  N 
Sbjct: 191 IHHSGSTTEQTRLYGSGNKLITVWSSKYQQSFVPNPGPRPQINGQSGRIDFHWLMLDPND 250

Query: 363 IMLRQYHSSYL 395
            +   ++ +++
Sbjct: 251 TVTFSFNGAFI 261


>sp|P26101|HEMA_I56A3 Hemagglutinin OS=Influenza A virus (strain
           A/Equine/Prague/1/1956 H7N7) GN=HA PE=3 SV=1
          Length = 570

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 186 LHSCMSLADQLRLWTKHQPSEMMWTCKTSTSFMPTK-PRPKLHSLMNRMAFKAIDLLANV 362
           +H   S  +Q RL+        +W+ K   SF+P   PRP+++    R+ F  + L  N 
Sbjct: 191 IHHSGSTTEQTRLYGSGNKLITVWSSKYQQSFVPNPGPRPQMNGQSGRIDFHWLMLDPND 250

Query: 363 IMLRQYHSSYL 395
            +   ++ +++
Sbjct: 251 TVTFSFNGAFI 261


>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein
            homolog OS=Rattus norvegicus GN=Brca1 PE=1 SV=1
          Length = 1817

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 431  QGGSPGAVTSCLKV*RMILPEHYHVCK 351
            Q G PGAVT C  V R+    HY  C+
Sbjct: 923  QEGKPGAVTMCADVSRLCPSSHYRSCE 949


>sp|P26100|HEMA_I77A9 Hemagglutinin OS=Influenza A virus (strain
           A/Equine/New Market/1/1977 H7N7) GN=HA PE=3 SV=1
          Length = 570

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 186 LHSCMSLADQLRLWTKHQPSEMMWTCKTSTSFMPTK-PRPKLHSLMNRMAF 335
           +H   S A+Q RL+        +W+ K   SF P   PRP+++    R+ F
Sbjct: 191 IHHSGSTAEQTRLYGSGNKLITVWSSKYQQSFAPNPGPRPQMNGQSGRIDF 241
tr_hit_id B4V2X0
Definition tr|B4V2X0|B4V2X0_9ACTO NADH-quinone oxidoreductase subunit G OS=Streptomyces sp. Mg1
Align length 47
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912750|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_E01.
         (440 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4V2X0|B4V2X0_9ACTO NADH-quinone oxidoreductase subunit G OS=...    37   0.49 
tr|Q4ACH2|Q4ACH2_EDWTA Colanic acid synthesis regulator OS=Edwar...    36   1.1  
tr|B5GWF3|B5GWF3_STRCL NADH-quinone oxidoreductase subunit G OS=...    36   1.1  
tr|B5HDM8|B5HDM8_STRPR Truncated NADH-quinone oxidoreductase sub...    35   1.4  
tr|B5HQC9|B5HQC9_9ACTO Truncated NADH dehydrogenase subunit G OS...    35   1.9  
tr|B5GCW6|B5GCW6_9ACTO NADH-quinone oxidoreductase subunit G OS=...    35   1.9  
tr|B1W513|B1W513_STRGG Putative NADH dehydrogenase chain G OS=St...    34   3.2  
tr|A1HMI3|A1HMI3_9FIRM GntR domain protein OS=Thermosinus carbox...    33   7.0  
tr|B3E3S9|B3E3S9_GEOLS GH3 auxin-responsive promoter OS=Geobacte...    33   9.2  
tr|B7K2S1|B7K2S1_SYNP8 Argininosuccinate lyase OS=Synechococcus ...    33   9.2  
tr|B4C616|B4C616_9CHRO Argininosuccinate lyase OS=Cyanothece sp....    33   9.2  
tr|A9V5J6|A9V5J6_MONBE Predicted protein OS=Monosiga brevicollis...    33   9.2  

>tr|B4V2X0|B4V2X0_9ACTO NADH-quinone oxidoreductase subunit G
           OS=Streptomyces sp. Mg1 GN=SSAG_02098 PE=4 SV=1
          Length = 371

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 299 PGFCRHKTGGCFTRPHHLRGLMLRPKSELIC*RHAAVE*DLTARWVC 159
           P  C H  GGC TR  H RG +LR        R AA + ++   W+C
Sbjct: 245 PSVCEHCAGGCATRTDHRRGKVLR--------RLAAEDPEVNEEWIC 283


>tr|Q4ACH2|Q4ACH2_EDWTA Colanic acid synthesis regulator
           OS=Edwardsiella tarda GN=rcsF PE=4 SV=1
          Length = 140

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
 Frame = +3

Query: 264 KTSTSFMPTKPR---PKLHSLMNRMAFKAIDLLANVIMLR------QYHSSYLQATCNGA 416
           + S S   T+P    P L +   RM +KA  L AN ++L       Q H  Y QATC G+
Sbjct: 72  EVSGSVCQTRPHHSAPSLTTARKRMLYKAAQLKANAVLLHSCQILSQSHGCYRQATCTGS 131


>tr|B5GWF3|B5GWF3_STRCL NADH-quinone oxidoreductase subunit G
           OS=Streptomyces clavuligerus ATCC 27064 GN=SSCG_03851
           PE=4 SV=1
          Length = 839

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 299 PGFCRHKTGGCFTRPHHLRGLMLRPKSELIC*RHAAVE*DLTARWVC 159
           P  C H  GGC TR  H RG ++R        R AA + ++   W+C
Sbjct: 242 PSVCEHCAGGCATRTDHRRGKVMR--------RLAADDPEVNEEWIC 280


>tr|B5HDM8|B5HDM8_STRPR Truncated NADH-quinone oxidoreductase
           subunit G OS=Streptomyces pristinaespiralis ATCC 25486
           GN=SSDG_03263 PE=4 SV=1
          Length = 556

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 299 PGFCRHKTGGCFTRPHHLRGLMLRPKSELIC*RHAAVE*DLTARWVC 159
           P  C H  GGC TR  H RG ++R        R AA + ++   W+C
Sbjct: 242 PSVCEHCAGGCATRTDHRRGKVMR--------RLAAQDPEVNEEWLC 280


>tr|B5HQC9|B5HQC9_9ACTO Truncated NADH dehydrogenase subunit G
           OS=Streptomyces sviceus ATCC 29083 GN=SSEG_08706 PE=4
           SV=1
          Length = 549

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 299 PGFCRHKTGGCFTRPHHLRGLMLRPKSELIC*RHAAVE*DLTARWVC 159
           P  C H +GGC TR  H RG ++R        + AA + ++   W+C
Sbjct: 242 PSVCEHCSGGCATRTDHRRGKVMR--------KLAANDPEVNEEWIC 280


>tr|B5GCW6|B5GCW6_9ACTO NADH-quinone oxidoreductase subunit G
           OS=Streptomyces sp. SPB74 GN=SSBG_02276 PE=4 SV=1
          Length = 840

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 299 PGFCRHKTGGCFTRPHHLRGLMLRPKSELIC*RHAAVE*DLTARWVC 159
           P  C H  GGC TR  H RG ++R        R AA + ++   W+C
Sbjct: 242 PSVCEHCAGGCATRTDHRRGKVMR--------RLAANDPEVNEEWLC 280


>tr|B1W513|B1W513_STRGG Putative NADH dehydrogenase chain G
           OS=Streptomyces griseus subsp. griseus (strain JCM 4626
           / NBRC 13350) GN=nuoG1 PE=4 SV=1
          Length = 836

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 299 PGFCRHKTGGCFTRPHHLRGLMLRPKSELIC*RHAAVE*DLTARWVC 159
           P  C   +GGC TR  H RG ++R        R AA E ++   W+C
Sbjct: 242 PSVCEQCSGGCSTRTDHRRGKVMR--------RLAANEPEVNEEWIC 280


>tr|A1HMI3|A1HMI3_9FIRM GntR domain protein OS=Thermosinus
           carboxydivorans Nor1 GN=TcarDRAFT_2711 PE=4 SV=1
          Length = 243

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 386 RMILPEHYHVCKEIDSFKCHSIHQAMQL 303
           ++IL EH  + K I+  KCH+ H+AM++
Sbjct: 193 KLILTEHEKIVKAIEQRKCHAAHRAMEI 220


>tr|B3E3S9|B3E3S9_GEOLS GH3 auxin-responsive promoter OS=Geobacter
           lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)
           GN=Glov_0617 PE=3 SV=1
          Length = 528

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 213 QLRLWTKHQPSEMMWTCKTSTSFMPTKPRPKLHSLMNRMAFKAIDLL 353
           QLRL  +  P  + W C+TS +  PTK  P  H +       A+D+L
Sbjct: 98  QLRLQDQSWPGLIPWFCETSGTTAPTKFIPFTHEMFRMNQRAALDML 144


>tr|B7K2S1|B7K2S1_SYNP8 Argininosuccinate lyase OS=Synechococcus sp.
           (strain PCC 8801 / RF-1) GN=PCC8801_3660 PE=4 SV=1
          Length = 462

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 174 SKILLHSCMSLADQLRLWTKHQPSEMMWT--CKTSTSFMPTKPRPKLHSLMNRMAFKAID 347
           S I++H    L++++ LW+ H+ S +  T  C T +S MP K  P +  L+   A +   
Sbjct: 245 SLIMVH-LSRLSEEMILWSSHEFSFISLTDSCATGSSIMPQKKNPDVPELVRGKAGRVFG 303

Query: 348 LLANVIML 371
            L  +++L
Sbjct: 304 HLQGMLVL 311