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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912752
Clone id YMU001_000022_E03
Library
Length 610
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TAACAATGAATGTAAAACACTGGGCCAATTGCATGTCTTCTTCCATGAGAGACCTTCTAC
AATCAGACAAGCTTATACACAATCAAGCCAATAGAGTAAGCGTCATAGGATACAAGAATG
AACCGTTTAGACCTTGTGACGACAAAACAAGAGGAAAGGGTAAAACTGACGAGTTTACAT
GCCGCTCAAATTTTATGGGTACGGGCACAAAAAATGGACAATATATAAAATGCCCCATGG
CCAAGAAACAACAAGCCTACACCCTGCTCTAACCTCTAAGATACTTGCCAGCATCCGTTT
TTACAAGAATATCACTACATTCATCATATCCTATGTCTACCTTTCCTTAGCCTGCAAAAT
GCCATCAAGAGATGCAATTTATGCTAATTCTACAGCTCAAAAATCGGTACACTTTGAGCC
AGTAGCTCAATCTGCTATGTGGTCATATAATCCCACCATTTCGGTCCCAAACTGCGCTTT
TTCCCCTCTTCGTCCTCCTCTTCATTGTCTACTTCCTCGTCGCCATCTTGTGATTCCTCG
TTATCTTCGCTTTCTTCTCCATCTTCAGCCAACTCTTGCTCCTCTGCATCAACATCCTCT
TCTCGTGCCC
■■Homology search results ■■ -
sp_hit_id P0C6U5
Definition sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N5)
Align length 61
Score (bit) 31.6
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912752|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_E03.
         (610 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronaviru...    32   3.3  
sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronaviru...    32   3.3  
sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronaviru...    32   3.3  
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavi...    32   3.3  
sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavi...    32   3.3  
sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavi...    32   3.3  
sp|A8GIB8|Y3762_SERP5 UPF0253 protein Spro_3762 OS=Serratia prot...    30   7.5  

>sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus
            HKU1 (isolate N5) GN=1a PE=3 SV=1
          Length = 4421

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 51   DLLQSDKLIHNQANRVSVIGYKNEPFRPCDDKTRGKGKTDEFTCRSNFMGTGTKNGQYIK 230
            DL    K+  N A R+      N PF  C +    K   D+    + FMG G  +  ++K
Sbjct: 1810 DLFNGYKIGCNCAGRIVHCTKLNVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLK 1869

Query: 231  C 233
            C
Sbjct: 1870 C 1870


>sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus
            HKU1 (isolate N2) GN=1a PE=3 SV=1
          Length = 4441

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 51   DLLQSDKLIHNQANRVSVIGYKNEPFRPCDDKTRGKGKTDEFTCRSNFMGTGTKNGQYIK 230
            DL    K+  N A R+      N PF  C +    K   D+    + FMG G  +  ++K
Sbjct: 1830 DLFNGYKIGCNCAGRIVHCTKLNVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLK 1889

Query: 231  C 233
            C
Sbjct: 1890 C 1890


>sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus
            HKU1 (isolate N1) GN=1a PE=1 SV=1
          Length = 4471

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 51   DLLQSDKLIHNQANRVSVIGYKNEPFRPCDDKTRGKGKTDEFTCRSNFMGTGTKNGQYIK 230
            DL    K+  N A R+      N PF  C +    K   D+    + FMG G  +  ++K
Sbjct: 1860 DLFNGYKIGCNCAGRIVHCTKLNVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLK 1919

Query: 231  C 233
            C
Sbjct: 1920 C 1920


>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus
            HKU1 (isolate N5) GN=rep PE=3 SV=1
          Length = 7132

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 51   DLLQSDKLIHNQANRVSVIGYKNEPFRPCDDKTRGKGKTDEFTCRSNFMGTGTKNGQYIK 230
            DL    K+  N A R+      N PF  C +    K   D+    + FMG G  +  ++K
Sbjct: 1810 DLFNGYKIGCNCAGRIVHCTKLNVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLK 1869

Query: 231  C 233
            C
Sbjct: 1870 C 1870


>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus
            HKU1 (isolate N2) GN=rep PE=3 SV=1
          Length = 7152

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 51   DLLQSDKLIHNQANRVSVIGYKNEPFRPCDDKTRGKGKTDEFTCRSNFMGTGTKNGQYIK 230
            DL    K+  N A R+      N PF  C +    K   D+    + FMG G  +  ++K
Sbjct: 1830 DLFNGYKIGCNCAGRIVHCTKLNVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLK 1889

Query: 231  C 233
            C
Sbjct: 1890 C 1890


>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus
            HKU1 (isolate N1) GN=rep PE=3 SV=1
          Length = 7182

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 51   DLLQSDKLIHNQANRVSVIGYKNEPFRPCDDKTRGKGKTDEFTCRSNFMGTGTKNGQYIK 230
            DL    K+  N A R+      N PF  C +    K   D+    + FMG G  +  ++K
Sbjct: 1860 DLFNGYKIGCNCAGRIVHCTKLNVPFLICSNTPLSKDLPDDVVAANMFMGVGVGHYTHLK 1919

Query: 231  C 233
            C
Sbjct: 1920 C 1920


>sp|A8GIB8|Y3762_SERP5 UPF0253 protein Spro_3762 OS=Serratia
           proteamaculans (strain 568) GN=Spro_3762 PE=3 SV=1
          Length = 66

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 296 RFYKNITTFIISYVYLSLACKMPSRDAIYANSTAQKSV 409
           RFY  I +  + YV  +LAC + + D + ANST   SV
Sbjct: 10  RFYAEIGSGDLGYVPDALACVLKALDEVAANSTLPSSV 47
tr_hit_id B7XJH8
Definition tr|B7XJH8|B7XJH8_9MICR Putative uncharacterized protein OS=Enterocytozoon bieneusi H348
Align length 34
Score (bit) 33.9
E-value 7.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912752|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_E03.
         (610 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7XJH8|B7XJH8_9MICR Putative uncharacterized protein OS=Enter...    34   7.6  

>tr|B7XJH8|B7XJH8_9MICR Putative uncharacterized protein
           OS=Enterocytozoon bieneusi H348 GN=EBI_25822 PE=4 SV=1
          Length = 173

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 248 TTSLHPALTSKILASIRFYKNITTFIISYVYLSL 349
           T   H  L +K++  I FYKNI    ++Y+YL++
Sbjct: 78  TEENHSVLKNKLIQKINFYKNIKNINVNYIYLNM 111