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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912753
Clone id YMU001_000022_E04
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGCAACGAGGAGTTGCAGGGTGTGAGACCCTAACCCTATTGCCCTCCATGCCCTTCCTTG
CTTTTTCTCTCTTGTAGTTCGTGTATTGGTTCTACTATCAAAGTAACCTCGAGGTCATGC
ATAGCTAATCTTAGAGACAGTCAAAGATGACGACCTTAAATACAAAACCTAAACATGAAT
TGATTGTGCACCTGGCATGTGTGCTGATGTGCCACCATGTACCAACAGCTGGCGCATCCA
ATACAGGGGGTCTCCCATTTGGGGGATGGTATGGTGTGGACAATCTACCAGGGTTTTCAA
AATTTCACCAACTCTGGCACTTTTTGGAGTATTCAGGAATGCTCAGAGGCTCCACCTAAC
ATACAAGCTTCTCAAGCTTGGTTTTCTTTATGATTGGAAGAGGGGTTCTGGGAAATGCTC
CCGATTGAAGGTTGTTAATTTGTCCTTGGATTGTCGTTGGCTTCTAACCATTCTTACATA
TCATGGTGGTAATATGCACCCCGTGTGTGGGTGTACTTAGATTTTTGTCTTCTCTCTCTG
CATT
■■Homology search results ■■ -
sp_hit_id Q83885
Definition sp|Q83885|VP2_NVN68 Protein VP2 OS=Norwalk virus (strain GI/Human/United States of America/Norwalk/1968)
Align length 81
Score (bit) 33.9
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912753|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_E04.
         (544 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q83885|VP2_NVN68 Protein VP2 OS=Norwalk virus (strain GI/Huma...    34   0.52 
sp|Q04550|VP2_SOUV3 Protein VP2 OS=Southampton virus (strain GI/...    33   0.68 
sp|Q9YH95|PAX5_XENLA Paired box protein Pax-5 OS=Xenopus laevis ...    32   2.0  
sp|Q5R996|BT3A3_PONAB Butyrophilin subfamily 3 member A3 OS=Pong...    32   2.0  
sp|Q02962|PAX2_HUMAN Paired box protein Pax-2 OS=Homo sapiens GN...    31   3.4  
sp|Q5E7F8|GSH1_VIBF1 Glutamate--cysteine ligase OS=Vibrio fische...    31   3.4  
sp|Q02650|PAX5_MOUSE Paired box protein Pax-5 OS=Mus musculus GN...    31   4.4  
sp|Q02548|PAX5_HUMAN Paired box protein Pax-5 OS=Homo sapiens GN...    31   4.4  
sp|Q9ULL4|PLXB3_HUMAN Plexin-B3 OS=Homo sapiens GN=PLXNB3 PE=1 SV=2    30   5.8  
sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus GN...    30   7.6  
sp|A8APV2|UREF_CITK8 Urease accessory protein ureF OS=Citrobacte...    30   9.9  
sp|A4WF97|RSMB_ENT38 Ribosomal RNA small subunit methyltransfera...    30   9.9  
sp|P32841|RE114_YEAST Meiotic recombination protein REC114 OS=Sa...    30   9.9  
sp|P78956|RE114_SACPA Meiotic recombination protein REC114 OS=Sa...    30   9.9  
sp|Q4WHA3|ARP4_ASPFU Actin-related protein 4 OS=Aspergillus fumi...    30   9.9  

>sp|Q83885|VP2_NVN68 Protein VP2 OS=Norwalk virus (strain
           GI/Human/United States of America/Norwalk/1968) GN=ORF3
           PE=3 SV=1
          Length = 212

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = -1

Query: 502 GVHITTMICKNG*KPTTIQGQINNLQSGAFPRTPLPIIKKTKLEKLVC*VEPLSIPEYSK 323
           G  +T ++  NG + +  +     L+SG F   P+P   K K  +      P   P    
Sbjct: 91  GAPVTRIVDWNGVRVSAPESSATTLRSGGFMSVPIPFASKQKQVQSSGISNPNYSPSSIS 150

Query: 322 KCQSW*NFENPGRLS--TPYH 266
           +  SW   +N  R    +PYH
Sbjct: 151 RTTSWVESQNSSRFGNLSPYH 171


>sp|Q04550|VP2_SOUV3 Protein VP2 OS=Southampton virus (strain
           GI/Human/United Kingdom/Southampton/1991) GN=ORF3 PE=3
           SV=1
          Length = 211

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -1

Query: 502 GVHITTMICKNG*KPTTIQGQINNLQSGAFPRTPLPIIKKTKLEKLVC*VEP-LSIPEYS 326
           G  +T +I  NG +    +     L+SG F   P+P+  K+K  +      P   +   S
Sbjct: 91  GAPVTRLIDWNGTRVAAPRSSATTLRSGGFMAVPMPVQPKSKTPQSSGFSNPAYDMSTVS 150

Query: 325 KKCQSW*NFENPGRLSTPYH 266
            +  SW   +N  R  +P+H
Sbjct: 151 SRTSSWVQSQNSLRSVSPFH 170


>sp|Q9YH95|PAX5_XENLA Paired box protein Pax-5 OS=Xenopus laevis
           GN=pax5 PE=2 SV=1
          Length = 388

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 349 PLSIPEYSKKCQSW*NFENPGRLSTPYH---PPNGRPPVLDA 233
           P S P+YS    SW  F NPG L +PY+      G PP   A
Sbjct: 343 PYSHPQYSSYNDSW-RFPNPGLLGSPYYYSAARGGAPPATAA 383


>sp|Q5R996|BT3A3_PONAB Butyrophilin subfamily 3 member A3 OS=Pongo
           abelii GN=BTN3A3 PE=2 SV=1
          Length = 585

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
 Frame = +1

Query: 292 GFQNFTNSGTFWSIQE----------CSEAPPNIQASQAWFSL*LEEGFWEMLPIEG 432
           G +NFT+   +W ++           CS+   N++  + W  +  E G+W M P +G
Sbjct: 386 GCENFTSGRHYWEVEVGDRKEWHIGVCSK---NVERKKGWVKMTPENGYWTMGPTDG 439


>sp|Q02962|PAX2_HUMAN Paired box protein Pax-2 OS=Homo sapiens
           GN=PAX2 PE=1 SV=4
          Length = 417

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 349 PLSIPEYSKKCQSW*NFENPGRLSTPYH---PPNGRPPVLDAPA 227
           P S P+Y+   ++W  F NP  LS+PY+    P G  P   A A
Sbjct: 371 PYSHPQYTAYNEAW-RFSNPALLSSPYYYSAAPRGSAPAAAAAA 413


>sp|Q5E7F8|GSH1_VIBF1 Glutamate--cysteine ligase OS=Vibrio fischeri
           (strain ATCC 700601 / ES114) GN=gshA PE=3 SV=1
          Length = 521

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 330 TPKSARVGEILKTLVDCPHHTIPQMGDPLYW 238
           TP S  V  +LK L D  H+T+  MGD   W
Sbjct: 69  TPVSNDVDTVLKQLEDVHHYTVSHMGDEKLW 99


>sp|Q02650|PAX5_MOUSE Paired box protein Pax-5 OS=Mus musculus
           GN=Pax5 PE=1 SV=1
          Length = 391

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 349 PLSIPEYSKKCQSW*NFENPGRLSTPYH 266
           P S P+YS    SW  F NPG L +PY+
Sbjct: 345 PYSHPQYSSYNDSW-RFPNPGLLGSPYY 371


>sp|Q02548|PAX5_HUMAN Paired box protein Pax-5 OS=Homo sapiens
           GN=PAX5 PE=1 SV=1
          Length = 391

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 349 PLSIPEYSKKCQSW*NFENPGRLSTPYH 266
           P S P+YS    SW  F NPG L +PY+
Sbjct: 345 PYSHPQYSSYNDSW-RFPNPGLLGSPYY 371


>sp|Q9ULL4|PLXB3_HUMAN Plexin-B3 OS=Homo sapiens GN=PLXNB3 PE=1 SV=2
          Length = 1909

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +2

Query: 341 AQRLHLTYKLLKLGFLYDWKRGSGKCSRLKVVNLSLDCRW 460
           AQRL  T+ L  +  LYD   G   CS  +  N SL C W
Sbjct: 772 AQRLDNTHALYVI--LYDCAMGHPDCSHCQAANRSLGCLW 809


>sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus
           GN=Pax2 PE=1 SV=2
          Length = 414

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 349 PLSIPEYSKKCQSW*NFENPGRLSTPYH---PPNGRPPVLDA 233
           P S P+Y+   ++W  F NP  LS+PY+    P G  P   A
Sbjct: 370 PYSHPQYTAYNEAW-RFSNPALLSSPYYYSAAPRGSAPAAAA 410
tr_hit_id B2AN64
Definition tr|B2AN64|B2AN64_PODAN Predicted CDS Pa_6_9110 OS=Podospora anserina
Align length 66
Score (bit) 35.8
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912753|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_E04.
         (544 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2AN64|B2AN64_PODAN Predicted CDS Pa_6_9110 OS=Podospora anse...    36   1.5  
tr|A0E4N7|A0E4N7_PARTE Chromosome undetermined scaffold_78, whol...    33   7.6  
tr|Q8VA26|Q8VA26_9CALI Minor structural protein OS=Human caliciv...    33   9.9  
tr|Q8JVV4|Q8JVV4_9CALI Minor structural protein OS=Norwalk-like ...    33   9.9  

>tr|B2AN64|B2AN64_PODAN Predicted CDS Pa_6_9110 OS=Podospora
           anserina PE=4 SV=1
          Length = 927

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = -1

Query: 373 EKLVC*VEPLSIPEYSKKCQSW*NFENP----GRLSTPYHPPNGRPPV---LDAPAVGTW 215
           +K V  V PLSI  YS K QSW  F+NP    G  ST    P  R      +  P +G  
Sbjct: 308 DKPVADVPPLSIWRYSIKSQSWDEFKNPKTTAGNYSTDADIPLERAAEGAGISVPELGLS 367

Query: 214 WHISTH 197
           W+   H
Sbjct: 368 WYFGGH 373


>tr|A0E4N7|A0E4N7_PARTE Chromosome undetermined scaffold_78, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00023429001 PE=4 SV=1
          Length = 480

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +2

Query: 281 QSTRVFKISPTLALFGVFRNAQRLHLTYKLLKLGFLYDWKRGSGKCSRLKV 433
           Q  R+   +  L ++ VF N+  ++   +LLK G L+D+   S K S LKV
Sbjct: 172 QILRLMNHNQLLTIYEVFENSSYIYFVQELLKGGDLHDYLERSEKLSELKV 222


>tr|Q8VA26|Q8VA26_9CALI Minor structural protein OS=Human
           calicivirus NLV/C59/99 PE=4 SV=1
          Length = 211

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -1

Query: 502 GVHITTMICKNG*KPTTIQGQINNLQSGAFPRTPLPIIKKTKLEKLVC*VEP-LSIPEYS 326
           G  +T +I  NG +    +     L+SG F   P+P+  K+K  +      P   +   S
Sbjct: 91  GAPVTQLIDWNGTRVAAPRSSSTTLRSGGFMAVPMPVQPKSKAPQSSGFPNPAYDMSTVS 150

Query: 325 KKCQSW*NFENPGRLSTPYH 266
            +  SW   +N  R  +P+H
Sbjct: 151 SRTSSWVQSQNSLRSVSPFH 170


>tr|Q8JVV4|Q8JVV4_9CALI Minor structural protein OS=Norwalk-like
           virus GN=ORF3 PE=4 SV=1
          Length = 196

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 20/79 (25%), Positives = 32/79 (40%)
 Frame = -1

Query: 502 GVHITTMICKNG*KPTTIQGQINNLQSGAFPRTPLPIIKKTKLEKLVC*VEPLSIPEYSK 323
           G  +T ++  NG +          L+SG F   P+P+  KTK   +     P        
Sbjct: 91  GAPVTRIVDWNGTRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSIS 150

Query: 322 KCQSW*NFENPGRLSTPYH 266
           +  SW   +N  R  +P+H
Sbjct: 151 RTASWVQSQNSMRSVSPFH 169