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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912754
Clone id YMU001_000022_E05
Library
Length 587
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTGAGTCAGATTACTTTTGCCATTGAATAGAAAGCATTCCCCAACCCATGC
TCACGCCGAGCAGATTTGATACATGTACAACTTCATGGGAATAAAATTCTCCACCCAATC
AGCAAAACAGAAACATCTTTCATACTCAATGTTAGTCAGATCATAACATCGGTACTTAAC
CTCTACCATTCCCCTGTATAGGCTCCGATTTTGCCAAATTTGTAGCAAATATATCCAAAA
GCCTATACTGGGAATGGGCGTGTCAATCCATAATAGAGACAGCTTATGCCACAATCCTTT
CAATATAGTACATTGGACCTGGCCTACCTGTTTGGCCACATTTACACCAACATTAGTTCC
CCAACGATGGAGGCAGAAGAGGAGGACGTCCATCCTTGAATTGCCCTGAAGATCTTCTAA
ATGACCCTGAGAAATGTGGCGCCTCCATTTGCCCAAACCTTCTACTGTGTATGCGACCAC
CATTCCTAACAATACCCACTAAATTATCCCCCACTCCCTGCCGGTGACCTGGCTTCTCCT
TGCCAAACTCCTTCGTCACCACATCCTTACTTGCTATCATGCTCGAG
■■Homology search results ■■ -
sp_hit_id P38172
Definition sp|P38172|YBJ5_YEAST Uncharacterized protein YBL095W OS=Saccharomyces cerevisiae
Align length 66
Score (bit) 33.5
E-value 0.78
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912754|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_E05.
         (576 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38172|YBJ5_YEAST Uncharacterized protein YBL095W OS=Saccharo...    33   0.78 
sp|Q8TUF8|PRIL_METAC Probable DNA primase large subunit OS=Metha...    32   2.3  
sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein ...    32   2.3  
sp|O95202|LETM1_HUMAN LETM1 and EF-hand domain-containing protei...    32   2.3  
sp|B0JSV5|NDHK_MICAN NAD(P)H-quinone oxidoreductase subunit K OS...    32   3.0  
sp|Q9Z2I0|LETM1_MOUSE LETM1 and EF-hand domain-containing protei...    31   3.9  
sp|P78426|NKX61_HUMAN Homeobox protein Nkx-6.1 OS=Homo sapiens G...    31   5.1  
sp|Q9STT7|ATH4_ARATH Putative ABC2 homolog 4 OS=Arabidopsis thal...    31   5.1  
sp|Q9DCD5|TJAP1_MOUSE Tight junction-associated protein 1 OS=Mus...    30   6.6  
sp|Q9BXR5|TLR10_HUMAN Toll-like receptor 10 OS=Homo sapiens GN=T...    30   6.7  

>sp|P38172|YBJ5_YEAST Uncharacterized protein YBL095W
           OS=Saccharomyces cerevisiae GN=YBL095W PE=1 SV=1
          Length = 270

 Score = 33.5 bits (75), Expect = 0.78
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -3

Query: 439 KWRRHISQGHLED--LQGNSRMDVLLFCL-HRWGTNVGVNVAKQVGQVQCTILKGLWHKL 269
           K R+ I +GHLE   L+ +SR     + L H WG N    +AK+  +  C +++  W K 
Sbjct: 204 KGRKCIIEGHLEQFPLEVSSRNGTRSWNLPHIWGFNHKQEMAKKFAKANCILVEPTWFKY 263

Query: 268 SLLWID 251
              W+D
Sbjct: 264 -FKWLD 268


>sp|Q8TUF8|PRIL_METAC Probable DNA primase large subunit
           OS=Methanosarcina acetivorans GN=priB PE=3 SV=1
          Length = 371

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 21/54 (38%), Positives = 31/54 (57%)
 Frame = +2

Query: 17  AIE*KAFPNPCSRRADLIHVQLHGNKILHPISKTETSFILNVSQIITSVLNLYH 178
           A+E + FP PC   A L +VQ  G  + H +    TSF+LNV   +  +LNL++
Sbjct: 221 AVEPELFP-PCISHA-LANVQ-GGVNLAHSMRFAMTSFLLNVGMSVEEILNLFN 271


>sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein 1,
           mitochondrial OS=Rattus norvegicus GN=Letm1 PE=1 SV=1
          Length = 739

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = -3

Query: 334 VNVAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRC 155
           V V K +GQ     LK  +H   LLWIDT I +   W  L      R   R  + +   C
Sbjct: 146 VVVKKSLGQKILDELKHYYHGFRLLWIDTKIAARMLWRILNGHTLTRRERRQFLRI---C 202

Query: 154 YDLTNIEYERCFCFADWVENFIPMKLYMY 68
            DL  +     F    ++E  +P+ + ++
Sbjct: 203 ADLFRLVPFLVFVVVPFMEFLLPVVVKLF 231


>sp|O95202|LETM1_HUMAN LETM1 and EF-hand domain-containing protein
           1, mitochondrial OS=Homo sapiens GN=LETM1 PE=1 SV=1
          Length = 739

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = -3

Query: 334 VNVAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRC 155
           V V K +GQ     LK  +H   LLWIDT I +   W  L      R   R  + +   C
Sbjct: 147 VVVKKSLGQRVLDELKHYYHGFRLLWIDTKIAARMLWRILNGHSLTRRERRQFLRI---C 203

Query: 154 YDLTNIEYERCFCFADWVENFIPMKLYMY 68
            DL  +     F    ++E  +P+ + ++
Sbjct: 204 ADLFRLVPFLVFVVVPFMEFLLPVAVKLF 232


>sp|B0JSV5|NDHK_MICAN NAD(P)H-quinone oxidoreductase subunit K
           OS=Microcystis aeruginosa (strain NIES-843) GN=ndhK PE=3
           SV=1
          Length = 247

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = +2

Query: 38  PNPCSRRADLIHVQLHGNKILHPISKTETSFILNVSQIITSVLNLYH 178
           PNP S    +I  Q    KIL+PI +T+ +  L+ + I+T+V +LY+
Sbjct: 3   PNPTSEFKQIIEQQ--SEKILNPIERTKVTQDLSENVILTTVDDLYN 47


>sp|Q9Z2I0|LETM1_MOUSE LETM1 and EF-hand domain-containing protein
           1, mitochondrial OS=Mus musculus GN=Letm1 PE=2 SV=1
          Length = 738

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 24/89 (26%), Positives = 38/89 (42%)
 Frame = -3

Query: 334 VNVAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRC 155
           V V K +GQ     L+  +H   LLWIDT I +   W  L      R   R  + +   C
Sbjct: 146 VVVRKSLGQKVLDELRHYYHGFRLLWIDTKIAARMLWRILNGHTLTRRERRQFLRI---C 202

Query: 154 YDLTNIEYERCFCFADWVENFIPMKLYMY 68
            DL  +     F    ++E  +P+ + ++
Sbjct: 203 ADLFRLVPFLVFVVVPFMEFLLPVVVKLF 231


>sp|P78426|NKX61_HUMAN Homeobox protein Nkx-6.1 OS=Homo sapiens
           GN=NKX6-1 PE=2 SV=1
          Length = 367

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 428 APPFAQTFYCVCDHHS*QYPLNYPPLPAGDLASPCQTPSSPHP 556
           +PP A   + + +  +  YP  YPPLPAG  +S   + SS  P
Sbjct: 19  SPPLA-ALHSMAEMKTPLYPAAYPPLPAGPPSSSSSSSSSSSP 60


>sp|Q9STT7|ATH4_ARATH Putative ABC2 homolog 4 OS=Arabidopsis
           thaliana GN=ATH4 PE=3 SV=1
          Length = 664

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = -3

Query: 424 ISQGHLEDLQGNSRMDVLLFC--LHRWGTNVGVNVAKQVGQVQCTILKGLWHKLSLLWID 251
           +S  +LE LQG+    +  F   + +  T + + +A  +G +  T +  L     L  + 
Sbjct: 206 VSNAYLEFLQGSGTKMLFDFVKEMPKQETRLRLEMASLIGPIFFTWVILLLFPFLLEGLS 265

Query: 250 TPIPSIGFWIYLLQIWQNRSLYRGMVE 170
            P      WIY+++++   SLYRG+ E
Sbjct: 266 FPRS----WIYIMELYPGFSLYRGLYE 288


>sp|Q9DCD5|TJAP1_MOUSE Tight junction-associated protein 1 OS=Mus
           musculus GN=Tjap1 PE=1 SV=1
          Length = 539

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +2

Query: 500 PLPAGDLASPCQTPSSPHP 556
           PLPA D  SP  TPS PHP
Sbjct: 291 PLPAFDKLSPYPTPSPPHP 309


>sp|Q9BXR5|TLR10_HUMAN Toll-like receptor 10 OS=Homo sapiens
           GN=TLR10 PE=1 SV=2
          Length = 811

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 115 NRNIFHTQC*SDHNIGT*--PLPFPCIGSDFAKFVANISKSLYWEW 246
           + N+FH    SDH I     P+PF CI + + K  A + K  Y EW
Sbjct: 714 HHNLFHEN--SDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLEW 757
tr_hit_id Q187D4
Definition tr|Q187D4|Q187D4_CLOD6 Putative O-acetylhomoserine sulfhydrylase OS=Clostridium difficile (strain 630)
Align length 38
Score (bit) 35.0
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912754|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_E05.
         (576 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q187D4|Q187D4_CLOD6 Putative O-acetylhomoserine sulfhydrylase...    35   2.9  
tr|Q5ZK33|Q5ZK33_CHICK Putative uncharacterized protein OS=Gallu...    34   6.5  
tr|B5VDP8|B5VDP8_YEAS6 YBL095Wp-like protein OS=Saccharomyces ce...    33   8.6  
tr|B3LNM6|B3LNM6_YEAS1 Putative uncharacterized protein OS=Sacch...    33   8.6  
tr|A6ZKK8|A6ZKK8_YEAS7 Conserved protein OS=Saccharomyces cerevi...    33   8.6  

>tr|Q187D4|Q187D4_CLOD6 Putative O-acetylhomoserine sulfhydrylase
           OS=Clostridium difficile (strain 630) GN=cysD PE=3 SV=1
          Length = 421

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 6/38 (15%)
 Frame = +2

Query: 284 SFQYSTLD-LAYLF-----GHIYTNISSPTMEAEEEDV 379
           +F+YS++D LA LF     GHIY+ IS+PT++A EE +
Sbjct: 30  TFKYSSIDQLAELFDLKVDGHIYSRISNPTIQAFEEKI 67


>tr|Q5ZK33|Q5ZK33_CHICK Putative uncharacterized protein OS=Gallus
           gallus GN=RCJMB04_13i11 PE=2 SV=1
          Length = 752

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 25/87 (28%), Positives = 38/87 (43%)
 Frame = -3

Query: 328 VAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRCYD 149
           V K +GQ     LK  +H   LLWIDT I +   W  L     +R   R  + +   C D
Sbjct: 146 VKKSIGQRIVDELKHYYHGFRLLWIDTKIAARMLWRILHGNTLSRRERRQFLRI---CAD 202

Query: 148 LTNIEYERCFCFADWVENFIPMKLYMY 68
           L  +     F    ++E  +P+ L ++
Sbjct: 203 LFRLVPFLVFLVVPFMEFLLPVALKLF 229


>tr|B5VDP8|B5VDP8_YEAS6 YBL095Wp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_20110 PE=4 SV=1
          Length = 270

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -3

Query: 439 KWRRHISQGHLED--LQGNSRMDVLLFCL-HRWGTNVGVNVAKQVGQVQCTILKGLWHKL 269
           K R+ I +GHLE   L+ +SR     + L H WG N    +AK+  +  C +++  W K 
Sbjct: 204 KGRKCIIEGHLEQFPLEVSSRNGTRSWNLPHIWGFNHKQEMAKKFAKANCILVEPTWFKY 263

Query: 268 SLLWID 251
              W+D
Sbjct: 264 -FKWLD 268


>tr|B3LNM6|B3LNM6_YEAS1 Putative uncharacterized protein
           OS=Saccharomyces cerevisiae (strain RM11-1a)
           GN=SCRG_03053 PE=4 SV=1
          Length = 270

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -3

Query: 439 KWRRHISQGHLED--LQGNSRMDVLLFCL-HRWGTNVGVNVAKQVGQVQCTILKGLWHKL 269
           K R+ I +GHLE   L+ +SR     + L H WG N    +AK+  +  C +++  W K 
Sbjct: 204 KGRKCIIEGHLEQFPLEVSSRNGTRSWNLPHIWGFNHKQEMAKKFAKANCILVEPTWFKY 263

Query: 268 SLLWID 251
              W+D
Sbjct: 264 -FKWLD 268


>tr|A6ZKK8|A6ZKK8_YEAS7 Conserved protein OS=Saccharomyces
           cerevisiae (strain YJM789) GN=SCY_0128 PE=4 SV=1
          Length = 270

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -3

Query: 439 KWRRHISQGHLED--LQGNSRMDVLLFCL-HRWGTNVGVNVAKQVGQVQCTILKGLWHKL 269
           K R+ I +GHLE   L+ +SR     + L H WG N    +AK+  +  C +++  W K 
Sbjct: 204 KGRKCIIEGHLEQFPLEVSSRNGTRSWNLPHIWGFNHKQEMAKKFAKANCILVEPTWFKY 263

Query: 268 SLLWID 251
              W+D
Sbjct: 264 -FKWLD 268