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NBDC - LSDB Archive
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BP912772
Clone id YMU001_000022_F12
Library
Length 405
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TAGACTATCAAGTGTGTAGGCTTCCCATAGCATGGCTTCAACTCTCCACACATCCCTTAG
CAAACAAGCATCCACTCCATACCAAGTAGCATCAAGCATATCACCATCCAAAATCCATGT
ACTCACACCAAGCTCGAACACGCATCTGACCCTTCGTGCCAACCAAATAAAGTGGAGGCA
TCAACCATAGACCCCTGCACCTGTTGAACCACCCATCGCATAGCTGTATTTACCATCATA
TTCATCAACCATAGCTCACATACCTTCAATGGAAGCAAAGCCACTGCCTGAGATTCTCCT
TTCTTCACCACTAGACATGTCTGCTGCATCGAAATCTTCACTGTCTTTGGCAACACAGCC
TCCTCTTTGGCCACACACTCGAATCCAACATCATTGATCCCTTCC
■■Homology search results ■■ -
sp_hit_id Q4FZU8
Definition sp|Q4FZU8|FA65A_RAT Protein FAM65A OS=Rattus norvegicus
Align length 105
Score (bit) 33.5
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912772|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_F12.
         (405 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4FZU8|FA65A_RAT Protein FAM65A OS=Rattus norvegicus GN=Fam65...    33   0.33 
sp|Q5F2E7|NUFP2_MOUSE Nuclear fragile X mental retardation-inter...    31   1.7  
sp|O60741|HCN1_HUMAN Potassium/sodium hyperpolarization-activate...    30   2.8  
sp|A1CQZ4|SDS23_ASPCL Protein sds23 OS=Aspergillus clavatus GN=s...    30   3.7  
sp|Q3ZXV7|RS15_DEHSC 30S ribosomal protein S15 OS=Dehalococcoide...    30   3.7  
sp|A5FQT1|RS15_DEHSB 30S ribosomal protein S15 OS=Dehalococcoide...    30   3.7  
sp|Q3Z7V7|RS15_DEHE1 30S ribosomal protein S15 OS=Dehalococcoide...    30   3.7  
sp|Q92212|STE20_CANAL Serine/threonine-protein kinase CST20 OS=C...    30   4.8  
sp|Q68FE6|FA65A_MOUSE Protein FAM65A OS=Mus musculus GN=Fam65a P...    30   4.8  
sp|Q8MP30|Y7791_DICDI Uncharacterized histidine-rich protein DDB...    29   6.3  
sp|Q81754|POLG_HCVH9 Genome polyprotein OS=Hepatitis C virus gen...    29   8.2  

>sp|Q4FZU8|FA65A_RAT Protein FAM65A OS=Rattus norvegicus GN=Fam65a
           PE=2 SV=2
          Length = 1217

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
 Frame = +2

Query: 23  SHSMASTLHTSLSKQASTPYQVASSISPSKIHVLTPSS------------------NTHL 148
           +H+  S  HT++S   STP    +++SPS    L+PS+                  +TH 
Sbjct: 600 THTTPSPTHTTVSPTHSTPSPTHTTVSPSNA-ALSPSNATPSLSHSTTSPTQKATMSTHT 658

Query: 149 TLRANQIKWRHQP*TPAPVEPPIA*LYLPSYSSTIAHIPSMEAKP 283
           T     ++    P +      P     + S SS +  +P  EA+P
Sbjct: 659 TSAVGPVQTTTSPISTTVSPSPSVDTAIISSSSAVPSVPGPEARP 703


>sp|Q5F2E7|NUFP2_MOUSE Nuclear fragile X mental
           retardation-interacting protein 2 OS=Mus musculus
           GN=Nufip2 PE=1 SV=1
          Length = 692

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 26/93 (27%), Positives = 33/93 (35%)
 Frame = +3

Query: 78  HTK*HQAYHHPKSMYSHQARTRI*PFVPTK*SGGINHRPLHLLNHPSHSCIYHHIHQP*L 257
           H   H  +HHP+     Q+                +H   +  NH SH+  +HH HQ   
Sbjct: 13  HHSHHHPHHHPQQQQQQQSH---------------HHHHYYFYNH-SHNHHHHHHHQQPH 56

Query: 258 TYLQWKQSHCLRFSFLHH*TCLLHRNLHCLWQH 356
            YLQ    H    S       L H   H L QH
Sbjct: 57  QYLQ----HGAEGSPKAQPKPLKHEQKHTLQQH 85


>sp|O60741|HCN1_HUMAN Potassium/sodium hyperpolarization-activated
           cyclic nucleotide-gated channel 1 OS=Homo sapiens
           GN=HCN1 PE=2 SV=2
          Length = 890

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = +2

Query: 35  ASTLHTSLSKQASTPYQVASSISPSKIHVLTPSSNT-HLTLRANQIKWRHQP*TPAPVEP 211
           ++T  TS  +  S P   A+S+S S +H  +PS+ T   +   +   +     +P PV+ 
Sbjct: 652 STTTPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTPQPSAILSPCSYTTAVCSP-PVQS 710

Query: 212 PIA*LYLPSYSSTIAHIPSMEAKPLPEILLSSP 310
           P+A       S T + +  M+ +P  ++  S P
Sbjct: 711 PLAARTFHYASPTASQLSLMQQQPQQQVQQSQP 743


>sp|A1CQZ4|SDS23_ASPCL Protein sds23 OS=Aspergillus clavatus
           GN=sds23 PE=3 SV=1
          Length = 521

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = +2

Query: 38  STLHTSLSKQASTPYQ---VASSISPSKIHVLTPS-SNTHLTLRANQIKWRHQP*TPAPV 205
           STL  +++K  +T      V   +SPS     TPS S+  L L AN I+         P+
Sbjct: 365 STLAHTVAKLVATKSHRLWVTDPLSPSSSGPPTPSHSSGQLPLAANPIQ-------SPPL 417

Query: 206 EPPIA*LYLPSYSSTIAHIPS 268
            PP     +PS + T  H+PS
Sbjct: 418 SPPPTSAGIPSPNYTTPHLPS 438


>sp|Q3ZXV7|RS15_DEHSC 30S ribosomal protein S15 OS=Dehalococcoides
           sp. (strain CBDB1) GN=rpsO PE=3 SV=1
          Length = 87

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 3   DYQVCRLPIAWLQLSTHPLANKHPLHTK 86
           + QV  L     QL+TH +ANKH  HTK
Sbjct: 24  EVQVALLTARIHQLTTHMIANKHDFHTK 51


>sp|A5FQT1|RS15_DEHSB 30S ribosomal protein S15 OS=Dehalococcoides
           sp. (strain BAV1) GN=rpsO PE=3 SV=1
          Length = 87

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 3   DYQVCRLPIAWLQLSTHPLANKHPLHTK 86
           + QV  L     QL+TH +ANKH  HTK
Sbjct: 24  EVQVALLTARIHQLTTHMIANKHDFHTK 51


>sp|Q3Z7V7|RS15_DEHE1 30S ribosomal protein S15 OS=Dehalococcoides
           ethenogenes (strain 195) GN=rpsO PE=3 SV=1
          Length = 87

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 3   DYQVCRLPIAWLQLSTHPLANKHPLHTK 86
           + QV  L     QL+TH +ANKH  HTK
Sbjct: 24  EVQVALLTARIHQLTTHMIANKHDFHTK 51


>sp|Q92212|STE20_CANAL Serine/threonine-protein kinase CST20
           OS=Candida albicans GN=CST20 PE=3 SV=2
          Length = 1228

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
 Frame = +2

Query: 5   LSSV*ASHSMASTLHTSLSK-----QASTPYQVASSISPSKIHVLTPSSNTHLTLRANQI 169
           LSS+  SH   S+     S      ++STP +    ISPSKI + + SS +  ++R+ + 
Sbjct: 658 LSSMSVSHKTPSSQSLPRSDSQSDIRSSTP-KSHQDISPSKIKIRSISSKSLKSMRSRKS 716

Query: 170 KWRHQP*TPAPVEPPIA*LYLPSYSSTIAHIPSMEAKPLP 289
             +     PAP  P      LPS   + +H  S+ ++  P
Sbjct: 717 GDKFTHIAPAPPPPS-----LPSIPKSKSHSASLSSQLRP 751


>sp|Q68FE6|FA65A_MOUSE Protein FAM65A OS=Mus musculus GN=Fam65a PE=1
           SV=1
          Length = 1223

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +2

Query: 23  SHSMASTLHTSLSKQASTPYQVASSISPSKIHVLTPSSNTHLTLRANQIKW-RHQP*TPA 199
           +H+  S  H+S S   +TP    +++SP+     TPSS    T    + K   H      
Sbjct: 613 THTTVSPTHSSPSPIHTTPSPTHTTVSPT---CTTPSSGHSTTSPTQEAKMSTHTTGAVG 669

Query: 200 PVE---PPIA*LYLPSYSSTIAHIPSMEAK 280
           PV+    PI+    PS S+ +A I S  A+
Sbjct: 670 PVQTTTSPISTTESPSPSTDVAIISSSSAE 699


>sp|Q8MP30|Y7791_DICDI Uncharacterized histidine-rich protein
           DDB0167791 OS=Dictyostelium discoideum GN=DDB_G0274557
           PE=4 SV=1
          Length = 233

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/67 (25%), Positives = 23/67 (34%)
 Frame = +3

Query: 51  HPLANKHPLHTK*HQAYHHPKSMYSHQARTRI*PFVPTK*SGGINHRPLHLLNHPSHSCI 230
           HP  + HP H   H  +HH    + H                  +H   H  +H  H   
Sbjct: 103 HPHHHHHPHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH 148

Query: 231 YHHIHQP 251
           +HH H P
Sbjct: 149 HHHHHHP 155
tr_hit_id Q4YA57
Definition tr|Q4YA57|Q4YA57_PLABE Putative uncharacterized protein (Fragment) OS=Plasmodium berghei
Align length 103
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912772|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_F12.
         (405 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4YA57|Q4YA57_PLABE Putative uncharacterized protein (Fragmen...    34   3.2  
tr|Q2H7K5|Q2H7K5_CHAGB Putative uncharacterized protein OS=Chaet...    34   3.2  
tr|A1WYJ4|A1WYJ4_HALHL Cation diffusion facilitator family trans...    34   4.2  
tr|Q5KCX3|Q5KCX3_CRYNE Putative uncharacterized protein OS=Crypt...    34   4.2  
tr|A1TW48|A1TW48_ACIAC MltA domain protein OS=Acidovorax avenae ...    33   5.5  
tr|A6GEI6|A6GEI6_9DELT Putative uncharacterized protein OS=Plesi...    33   5.5  
tr|A7TPB7|A7TPB7_VANPO Putative uncharacterized protein OS=Vande...    33   5.5  
tr|Q73EU7|Q73EU7_BACC1 Fumarylacetoacetate hydrolase family prot...    33   7.2  
tr|B7X290|B7X290_COMTE MltA domain protein OS=Comamonas testoste...    33   7.2  
tr|B7HRY0|B7HRY0_BACCE Fumarylacetoacetate hydrolase family prot...    33   7.2  
tr|B5V9G3|B5V9G3_BACCE Fumarylacetoacetate hydrolase family prot...    33   7.2  
tr|A9BS79|A9BS79_DELAS MltA domain protein OS=Delftia acidovoran...    33   9.4  
tr|A9U784|A9U784_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.4  
tr|Q17AN9|Q17AN9_AEDAE Putative uncharacterized protein OS=Aedes...    33   9.4  
tr|B4H170|B4H170_DROPE GL22562 OS=Drosophila persimilis GN=GL225...    33   9.4  

>tr|Q4YA57|Q4YA57_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB402672.00.0 PE=4 SV=1
          Length = 326

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = +3

Query: 51  HPLANKHP-LHTK*HQAYHHPKSMYSHQARTRI*PFVPTK*SGGINHRPLHLLNHPSHSC 227
           +PL + H  L +  H  YHHP     H     +  F+         H   H   HP H  
Sbjct: 224 YPLHHIHQFLRSFLHFHYHHPFHYPLHHIHQFLRNFL---------HFHYH---HPFHYP 271

Query: 228 IYHHIHQP*LTYLQWKQSHCLRFSFLHH*TCLLHRNLHCLWQH 356
           + HHIHQ    +L +   H   +  LHH    L   LH  + H
Sbjct: 272 L-HHIHQFLRNFLHFHYHHPFHYQLLHHIHQFLRSFLHFHYHH 313


>tr|Q2H7K5|Q2H7K5_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_05360 PE=4 SV=1
          Length = 403

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
 Frame = +3

Query: 42  LSTHPLANKHPLHTK*HQAYHHPKSMYSHQARTRI*PFVPTK*SGGINHR-----PLHLL 206
           L T P  N HP H   H+    P S   H +      F P   SG  NH      P+H+ 
Sbjct: 244 LITTPNPNNHPTHAPPHRRPPLPGSPQPHSS------FRP---SGPGNHHSHGNGPIHIH 294

Query: 207 NHPSHSCI-------YHHIHQP 251
            HP+H+ +       +HH H P
Sbjct: 295 QHPTHAGLTTGHHHHHHHHHAP 316


>tr|A1WYJ4|A1WYJ4_HALHL Cation diffusion facilitator family
           transporter OS=Halorhodospira halophila (strain DSM 244
           / SL1) GN=Hhal_1992 PE=4 SV=1
          Length = 389

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -2

Query: 218 RWVVQQVQGSMVDASTLFGWHEGSDACSSLV*VHGFWMVICLMLLGMEWM 69
           RWV  +   +++ A+    WH  SDA SS+V V G    I  +LLG+ W+
Sbjct: 147 RWVAYRAHSNLIHANA---WHHRSDALSSVVVVGG----IVGVLLGLPWL 189


>tr|Q5KCX3|Q5KCX3_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNH02530 PE=4 SV=1
          Length = 523

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/65 (36%), Positives = 30/65 (46%)
 Frame = +3

Query: 171 SGGINHRPLHLLNHPSHSCIYHHIHQP*LTYLQWKQSHCLRFSFLHH*TCLLHRNLHCLW 350
           SG   H PLH   H +H  ++HH H+    +L      C   S LHH   LLH   H L 
Sbjct: 439 SGCFLHHPLH--EHYAHCLVHHHRHRQ---HLHIPHLLC-HPSLLHHPDPLLHSPFHHLL 492

Query: 351 QHSLL 365
            + LL
Sbjct: 493 HYLLL 497


>tr|A1TW48|A1TW48_ACIAC MltA domain protein OS=Acidovorax avenae
           subsp. citrulli (strain AAC00-1) GN=Aave_4651 PE=4 SV=1
          Length = 433

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 126 VSTWILD-GDMLDATWYGVDACLLRDVWRVEAMLW 25
           V  W+LD G + DATW G+ A  L++  RV  MLW
Sbjct: 290 VGRWLLDQGLVRDATWPGIRAWTLQNPQRVPEMLW 324


>tr|A6GEI6|A6GEI6_9DELT Putative uncharacterized protein
           OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_28746 PE=4 SV=1
          Length = 139

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = -3

Query: 223 LCDG--WFNRCRGLWLMPPLYLVGTKGQMRVRA 131
           LCDG  W + CRGL+ + PL +VG   +MRV+A
Sbjct: 22  LCDGPGWRDWCRGLYFLDPL-VVGRSARMRVKA 53


>tr|A7TPB7|A7TPB7_VANPO Putative uncharacterized protein
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=Kpol_1019p24 PE=4 SV=1
          Length = 228

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
 Frame = +3

Query: 39  QLSTHPLANKHPLHTK*HQAYHHP---KSMYSHQARTRI*PFVPTK*SGGINHRPLHLLN 209
           QL    + + HP+H   H  + HP   + +  H          P + +  ++H  +H   
Sbjct: 57  QLLQDIVQHHHPIHQHHHHTHQHPHHIRQLLHHIHLPHHHTLQPPQVTVQLHHH-IHQHL 115

Query: 210 HPSHSCIYHHIHQP*LTYLQW----KQSHCLRFSFLHH*TCLLHRNLHCLWQHSLLFGH 374
           H +H  ++HHIHQ     +Q      Q H       HH   LLH ++H    H+L   H
Sbjct: 116 HHTHQ-LHHHIHQLLQVIVQHHHPIHQHHHHTHQHPHHIRQLLH-HIHLPHHHTLQHHH 172


>tr|Q73EU7|Q73EU7_BACC1 Fumarylacetoacetate hydrolase family protein
           OS=Bacillus cereus (strain ATCC 10987) GN=BCE_0261 PE=4
           SV=1
          Length = 318

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 144 CVFELGVSTWILDGDMLDATWYGVDACLLRDVWRVEAMLWEAYTLDS 4
           C+ ELG   W+ DGD+++ T  G+    LR+  ++E    + + L S
Sbjct: 268 CILELGTEEWLQDGDVVELTITGLGT--LRNTVKIEREAGDGHVLSS 312


>tr|B7X290|B7X290_COMTE MltA domain protein OS=Comamonas
           testosteroni KF-1 GN=CtesDRAFT_PD5152 PE=3 SV=1
          Length = 391

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 126 VSTWILDGDML-DATWYGVDACLLRDVWRVEAMLW 25
           V  W+LD +++ DATW G+ A +  +  RV  MLW
Sbjct: 239 VGRWLLDQNLVRDATWPGISAWIAANPSRVNEMLW 273


>tr|B7HRY0|B7HRY0_BACCE Fumarylacetoacetate hydrolase family protein
           OS=Bacillus cereus AH187 GN=BCAH187_A0275 PE=4 SV=1
          Length = 319

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 144 CVFELGVSTWILDGDMLDATWYGVDACLLRDVWRVEAMLWEAYTLDS 4
           C+ ELG   W+ DGD+++ T  G+    LR+  ++E    + + L S
Sbjct: 269 CILELGTEEWLQDGDVVELTITGLGT--LRNTVKIEREAGDGHVLSS 313