BP912773 |
Clone id |
YMU001_000022_G01 |
Library |
YMU01 |
Length |
555 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000022_G01. |
Accession |
BP912773 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
AACTGGAAGAATTCGCGGCCGCGAATATCTCACCAGTGTAGGTTTGCATAGTTTTTGTAG CGCAAAAGGTCTTCATTACATGCAAATAACTAAATTGCAATTCACAAGGCAGCTACACTT TTTCATTCTCATGACTGTCAGAATATACAAGGCAATAGGTGAGACATGGAAGACGCATAG TGTGTCAGAATTCAGGATTCACCTCATTAACATACAAAAGCAATCATTGAGCAAGGGCAC TGGTGTTGTACACTAAGAGGGCACCACCCAACAAGATAGCGCCGAGGGTAACTGCCCAGA TAGCCAATCCAGTAGGACCTGCAGCATAGCTATCACCAGAAGTTGTCCATTCCTCTGGGA CATAGATAGGGCTGTATCCATCGACATTAGCACCATACTTCTTGGTATATTGGTAGACTC CCTTTCCCTTAGCTTTGCGACCAGAGGCATCCAGGTTACCCTTGAATGTGGTATCGCCGG AAGGTCCCAAGGGAGTGATGGTCGAGATCTTCTTGACACCACTTGCCTCGATTCTGAGGG AGCGGGCGGATAGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P06183 |
Definition |
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum |
Align length |
108 |
Score (bit) |
129.0 |
E-value |
9.0e-30 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912773|Adiantum capillus-veneris mRNA, clone: YMU001_000022_G01. (528 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 129 9e-30 sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 129 9e-30 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 128 2e-29 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 125 9e-29 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 125 1e-28 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 124 4e-28 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 122 8e-28 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 31 3.2 sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteri... 31 4.1 sp|A1S7K4|MNMC_SHEAM tRNA 5-methylaminomethyl-2-thiouridine bios... 30 5.4 sp|Q4R7D5|CO033_MACFA Uncharacterized protein C15orf33 homolog O... 30 7.1 sp|Q96M60|CO033_HUMAN Uncharacterized protein C15orf33 OS=Homo s... 30 7.1 sp|Q58CT4|TM180_BOVIN Transmembrane protein 180 OS=Bos taurus GN... 30 9.2
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 129 bits (324), Expect = 9e-30 Identities = 65/108 (60%), Positives = 74/108 (68%) Frame = -3
Query: 523 SARSLRIEASGVKKISTITPLGPSGDTTFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 344 S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY KYGANVDGYS Sbjct: 31 SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYS 90
Query: 343 PIYVPEEWTTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 200 PIY +EW+ SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 91 PIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 129 bits (324), Expect = 9e-30 Identities = 65/108 (60%), Positives = 74/108 (68%) Frame = -3
Query: 523 SARSLRIEASGVKKISTITPLGPSGDTTFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 344 S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY KYGANVDGYS Sbjct: 31 SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYS 90
Query: 343 PIYVPEEWTTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 200 PIY +EW+ SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 91 PIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 128 bits (321), Expect = 2e-29 Identities = 63/108 (58%), Positives = 76/108 (70%) Frame = -3
Query: 523 SARSLRIEASGVKKISTITPLGPSGDTTFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 344 S+ S R++ASGVKK+ T P G +G + + +DASGRK KGKGVYQ+ KYGANVDGYS Sbjct: 29 SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYS 88
Query: 343 PIYVPEEWTTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 200 PIY ++W+ SGD Y G TGLAIWAVT LV+NTSALAQ Sbjct: 89 PIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 125 bits (315), Expect = 9e-29 Identities = 66/108 (61%), Positives = 72/108 (66%), Gaps = 1/108 (0%) Frame = -3
Query: 523 SAR-SLRIEASGVKKISTITPLGPSGDTTFKGNLDASGRKAKGKGVYQYTKKYGANVDGY 347 SAR SL I A KK+ T P GP G FK +DASGR AKGKGVYQ+ KYGANVDGY Sbjct: 30 SARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGY 89
Query: 346 SPIYVPEEWTTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALA 203 SPIY PEEW+ SGD Y G TGL +WAVT LVY+TSALA Sbjct: 90 SPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 125 bits (314), Expect = 1e-28 Identities = 65/108 (60%), Positives = 72/108 (66%) Frame = -3
Query: 523 SARSLRIEASGVKKISTITPLGPSGDTTFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 344 S S RI ASGVKKI T P G +G + +DASGRK KG GVY++ KYGANVDGYS Sbjct: 34 SPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYS 93
Query: 343 PIYVPEEWTTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 200 PIY +EW+ SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 94 PIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 124 bits (310), Expect = 4e-28 Identities = 64/105 (60%), Positives = 70/105 (66%) Frame = -3
Query: 514 SLRIEASGVKKISTITPLGPSGDTTFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIY 335 S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y KYGANVDGYSPIY Sbjct: 36 SFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIY 95
Query: 334 VPEEWTTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 200 EW+ SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 96 NENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 122 bits (307), Expect = 8e-28 Identities = 63/108 (58%), Positives = 70/108 (64%) Frame = -3
Query: 523 SARSLRIEASGVKKISTITPLGPSGDTTFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 344 S+ S + ASGVKKI PLG G + +D+SGRK GKGVYQ+ KYGANVDGYS Sbjct: 33 SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYS 92
Query: 343 PIYVPEEWTTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 200 PIY EEW +GD YA G TGL IWAVT LVYNTSALAQ Sbjct: 93 PIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1 Length = 349
Score = 31.2 bits (69), Expect = 3.2 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -3
Query: 382 YTKKYGANVDGYSPIYVPEEWTTSGDSYAAGP 287 Y +G N D Y Y PEEWTT+ S A P Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWTTTRSSLKAPP 333
>sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteria phage T7 GN=1 PE=1 SV=2 Length = 883
Score = 30.8 bits (68), Expect = 4.1 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -3
Query: 484 KISTITPLGPSGDTTFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIYVPE 326 ++ ++ P G+ KG L + K GK Y + K +GAN G + PE Sbjct: 425 RVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPE 477
>sp|A1S7K4|MNMC_SHEAM tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=mnmC PE=3 SV=2 Length = 665
Score = 30.4 bits (67), Expect = 5.4 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = +2
Query: 356 DISTILLGILVDSLSLSFATRGIQVTLECGIAGRSQGSDG 475 DIS + G+ SL+LS RG +VTL C A G+ G Sbjct: 260 DISIVGAGVAGASLALSLLRRGHKVTLYCADAAPGIGASG 299
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PIM0 |
Definition |
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Populus jackii |
Align length |
109 |
Score (bit) |
137.0 |
E-value |
3.0e-31 |
Report |
|