BP912782 |
Clone id |
YMU001_000022_G10 |
Library |
YMU01 |
Length |
465 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000022_G10. |
Accession |
BP912782 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1093Contig1 |
Sequence |
AACTGAAGAGGCAAAGTGCTCATGGCTGCGGGCGAAAACGGGACCTGCGTGGCATGTAAT TCTTCAAGTTGCCTTTGCATCTTTGATAACTGTTGTTGCAGTATAGCGACGAGAGATGCG TCGGAGGCGGAAGATGGGGGAGAACCCTCGGGACGAAGCCCGTGTGTGTGTGGAATCGGG AGGAGAAAGAGGCGCCTCCTCCTTGGGTTGATGCGTGCTAGCAGCGCCATTCTCATGCGG AGAAGCATCGTGTGACGCCATGGCGCTAAGGTAAAGAGAGTGTGCCGGAGTATGTAGGAG GAGGTCGCTTGGGAAAAGCGCCCAAGGTGTAAAATAAGACTAGTAGTAGTAGTAGACAAC AGGGGATAGAAAGAGCGTAAGAGATAAATTATGCACGCATGAGATACAGCTTTTAGTGAC GTGGACGTCGCACTCTTCTCGTTGGCGTGTATTATATAGAAGGAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6AYF4 |
Definition |
sp|Q6AYF4|ITB6_RAT Integrin beta-6 OS=Rattus norvegicus |
Align length |
55 |
Score (bit) |
37.0 |
E-value |
0.043 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912782|Adiantum capillus-veneris mRNA, clone: YMU001_000022_G10. (465 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q6AYF4|ITB6_RAT Integrin beta-6 OS=Rattus norvegicus GN=Itgb6... 37 0.043 sp|Q9Z0T9|ITB6_MOUSE Integrin beta-6 OS=Mus musculus GN=Itgb6 PE... 35 0.12 sp|Q17QV2|MON1A_BOVIN Vacuolar fusion protein MON1 homolog A OS=... 34 0.28 sp|P18563|ITB6_CAVPO Integrin beta-6 (Fragment) OS=Cavia porcell... 34 0.28 sp|Q863C4|ITB6_SHEEP Integrin beta-6 OS=Ovis aries GN=ITGB6 PE=2... 34 0.36 sp|Q1RPR6|ITB6_PIG Integrin beta-6 OS=Sus scrofa GN=ITGB6 PE=2 SV=1 34 0.36 sp|Q8SQB8|ITB6_BOVIN Integrin beta-6 OS=Bos taurus GN=ITGB6 PE=1... 34 0.36 sp|P18564|ITB6_HUMAN Integrin beta-6 OS=Homo sapiens GN=ITGB6 PE... 33 0.47 sp|O70309|ITB5_MOUSE Integrin beta-5 OS=Mus musculus GN=Itgb5 PE... 32 1.4 sp|A6S7C7|ATG2_BOTFB Autophagy-related protein 2 OS=Botryotinia ... 32 1.4 sp|Q54LU8|Y8646_DICDI Probable serine/threonine-protein kinase D... 30 1.5 sp|P80747|ITB5_BOVIN Integrin beta-5 OS=Bos taurus GN=ITGB5 PE=1... 32 1.8 sp|Q95KG9|MON1A_MACFA Vacuolar fusion protein MON1 homolog A OS=... 31 2.3 sp|O75690|KRA58_HUMAN Keratin-associated protein 5-8 OS=Homo sap... 31 3.1 sp|Q39LW7|SSUB2_BURS3 Aliphatic sulfonates import ATP-binding pr... 30 5.2 sp|Q9WU74|LSR_RAT Lipolysis-stimulated lipoprotein receptor OS=R... 30 5.2 sp|Q99KG5|LSR_MOUSE Lipolysis-stimulated lipoprotein receptor OS... 30 5.2 sp|P08928|LAM0_DROME Lamin Dm0 OS=Drosophila melanogaster GN=Lam... 30 5.2 sp|Q71H61|CA032_HUMAN Transmembrane and immunoglobulin domain-co... 30 5.2 sp|A7E6F5|ATG2_SCLS1 Autophagy-related protein 2 OS=Sclerotinia ... 30 5.2 sp|A6T6D8|ATKB_KLEP7 Potassium-transporting ATPase B chain OS=Kl... 30 6.7 sp|Q5BX25|SJ965_SCHJA UPF0506 protein SJCHGC02965 (Fragment) OS=... 30 6.8 sp|Q5C6R9|SJ381_SCHJA UPF0506 protein SJCHGC02381 OS=Schistosoma... 30 6.8 sp|Q5DBT1|SJ380_SCHJA UPF0506 protein SJCHGC02380 OS=Schistosoma... 30 6.8 sp|Q5DF86|SJ144_SCHJA UPF0506 protein SJCHGC03144 OS=Schistosoma... 30 6.8 sp|Q5DC74|SJ047_SCHJA UPF0506 protein SJCHGC03047 OS=Schistosoma... 30 6.8 sp|P33187|MTCD_HELPO Cadmium-metallothionein OS=Helix pomatia PE... 30 6.8 sp|Q0CKU1|GRC3_ASPTN Protein grc3 OS=Aspergillus terreus (strain... 30 6.8 sp|P60905|DNJC5_RAT DnaJ homolog subfamily C member 5 OS=Rattus ... 30 6.8 sp|P60904|DNJC5_MOUSE DnaJ homolog subfamily C member 5 OS=Mus m... 30 6.8
>sp|Q6AYF4|ITB6_RAT Integrin beta-6 OS=Rattus norvegicus GN=Itgb6 PE=2 SV=1 Length = 787
Score = 37.0 bits (84), Expect = 0.043 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = +1
Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 + G+NG C + C+C + C C+ +RDA +EDG SGR CVCG Sbjct: 550 LLCGDNGDC---DCGECVCRDGWTGEYCNCT-TSRDACASEDGVLCSGRGDCVCG 600
>sp|Q9Z0T9|ITB6_MOUSE Integrin beta-6 OS=Mus musculus GN=Itgb6 PE=2 SV=1 Length = 787
Score = 35.4 bits (80), Expect = 0.12 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +1
Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 + G+NG C + C+C + C C+ RD+ +EDG SGR CVCG Sbjct: 550 LLCGDNGDC---DCGECVCRDGWTGEYCNCT-TNRDSCTSEDGVLCSGRGDCVCG 600
>sp|Q17QV2|MON1A_BOVIN Vacuolar fusion protein MON1 homolog A OS=Bos taurus GN=MON1A PE=2 SV=1 Length = 555
Score = 34.3 bits (77), Expect = 0.28 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = -1
Query: 279 SLYLSAMASHDASPHENGAASTHQPKEEAPLSPPDSTHTRASSRGFSPI 133 ++++ A + D + E+GAAS PKE A PP +T R S+ FS + Sbjct: 49 AMFVHARSYEDLTESEDGAASGESPKEGAGGPPPLATDMRQISQDFSEL 97
>sp|P18563|ITB6_CAVPO Integrin beta-6 (Fragment) OS=Cavia porcellus GN=ITGB6 PE=2 SV=1 Length = 577
Score = 34.3 bits (77), Expect = 0.28 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Frame = +1
Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 + G+NG C C+C + C C+ +T D +EDG SGR CVCG Sbjct: 409 LLCGDNGDC---ECGECVCRSGWTGEYCNCTTST-DTCISEDGTLCSGRGDCVCG 459
>sp|Q863C4|ITB6_SHEEP Integrin beta-6 OS=Ovis aries GN=ITGB6 PE=2 SV=1 Length = 787
Score = 33.9 bits (76), Expect = 0.36 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +1
Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 + G+NG C + C+C + C C+ +T D +EDG SGR CVCG Sbjct: 550 LLCGDNGDC---DCGECVCRSGWTGEYCNCTTST-DPCVSEDGILCSGRGDCVCG 600
>sp|Q1RPR6|ITB6_PIG Integrin beta-6 OS=Sus scrofa GN=ITGB6 PE=2 SV=1 Length = 788
Score = 33.9 bits (76), Expect = 0.36 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Frame = +1
Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 + G+NG C C+C + C C+ +T D +EDG SGR CVCG Sbjct: 550 LLCGDNGDC---ECGECVCRSGWTGEYCNCTTST-DQCVSEDGVLCSGRGDCVCG 600
>sp|Q8SQB8|ITB6_BOVIN Integrin beta-6 OS=Bos taurus GN=ITGB6 PE=1 SV=1 Length = 788
Score = 33.9 bits (76), Expect = 0.36 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +1
Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 + G+NG C + C+C + C C+ +T D +EDG SGR CVCG Sbjct: 550 LLCGDNGDC---DCGECVCRSGWTGEYCNCTTST-DPCVSEDGILCSGRGDCVCG 600
>sp|P18564|ITB6_HUMAN Integrin beta-6 OS=Homo sapiens GN=ITGB6 PE=1 SV=2 Length = 788
Score = 33.5 bits (75), Expect = 0.47 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +1
Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 + G NG C + C+C + C C+ +T D+ +EDG SGR CVCG Sbjct: 550 LLCGGNGDC---DCGECVCRSGWTGEYCNCTTST-DSCVSEDGVLCSGRGDCVCG 600
>sp|O70309|ITB5_MOUSE Integrin beta-5 OS=Mus musculus GN=Itgb5 PE=2 SV=2 Length = 798
Score = 32.0 bits (71), Expect = 1.4 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Frame = +1
Query: 7 RGKVLMAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 R K ++ +G C+ C C I DNC CS +A+DG S R CVCG Sbjct: 557 RNKGVLCSGHG----ECHCGECKCHAGYIGDNCNCSTDV-STCKAKDGQICSDRGRCVCG 611
>sp|A6S7C7|ATG2_BOTFB Autophagy-related protein 2 OS=Botryotinia fuckeliana (strain B05.10) GN=atg2 PE=3 SV=1 Length = 2160
Score = 32.0 bits (71), Expect = 1.4 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = -1
Query: 318 LFPSDLLLHTPAHSLYLSAMASHDASPHENGAASTHQPKEEA---PLSPPD 175 L S L H A S+Y+SA++ A+P G A + E+A PL+P D Sbjct: 556 LAQSQLFSHEEAESMYMSAVSFTSAAPIPGGWADSGTESEDARSPPLTPTD 606
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B0UY54 |
Definition |
tr|B0UY54|B0UY54_DANRE Integrin beta OS=Danio rerio |
Align length |
59 |
Score (bit) |
36.2 |
E-value |
0.85 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912782|Adiantum capillus-veneris mRNA, clone: YMU001_000022_G10. (465 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B0UY54|B0UY54_DANRE Integrin beta OS=Danio rerio GN=itgb5 PE=... 36 0.85 tr|B1AYG7|B1AYG7_MOUSE Integrin beta (Fragment) OS=Mus musculus ... 35 1.4 tr|B1AYG6|B1AYG6_MOUSE Integrin beta OS=Mus musculus GN=Itgb6 PE... 35 1.4 tr|B1AYG5|B1AYG5_MOUSE Integrin beta OS=Mus musculus GN=Itgb6 PE... 35 1.4 tr|B4QAP2|B4QAP2_DROSI GD25949 OS=Drosophila simulans GN=GD25949... 35 1.4 tr|B4HN13|B4HN13_DROSE GM20487 OS=Drosophila sechellia GN=GM2048... 35 1.4 tr|Q4T5X5|Q4T5X5_TETNG Chromosome undetermined SCAF9050, whole g... 35 1.9 tr|Q4S9S7|Q4S9S7_TETNG Integrin beta (Fragment) OS=Tetraodon nig... 35 1.9 tr|Q1MSX8|Q1MSX8_DANRE Integrin beta OS=Danio rerio GN=itgb5 PE=... 35 1.9 tr|A5D6V1|A5D6V1_DANRE Integrin beta OS=Danio rerio GN=itgb5 PE=... 35 1.9 tr|A7SM23|A7SM23_NEMVE Integrin beta (Fragment) OS=Nematostella ... 35 1.9 tr|Q6DF97|Q6DF97_XENLA Integrin beta OS=Xenopus laevis GN=itgb5-... 35 2.5 tr|A5Z1X7|A5Z1X7_CAMBA Integrin beta OS=Camelus bactrianus PE=2 ... 35 2.5 tr|B4NSC7|B4NSC7_DROSI GD15260 OS=Drosophila simulans GN=GD15260... 35 2.5 tr|B5DEV6|B5DEV6_XENTR Putative uncharacterized protein OS=Xenop... 34 3.2 tr|Q6T683|Q6T683_CHICK Integrin beta OS=Gallus gallus PE=2 SV=1 34 4.2 tr|B2JTM6|B2JTM6_BURP8 Tetratricopeptide TPR_2 repeat protein OS... 34 4.2 tr|B5GAR9|B5GAR9_9ACTO Sugar ABC transporter ATP-binding protein... 34 4.2 tr|Q1RPR5|Q1RPR5_PIG Integrin beta OS=Sus scrofa GN=ITGB6 PE=2 SV=1 34 4.2 tr|B0FYY3|B0FYY3_SHEEP Integrin beta OS=Ovis aries PE=2 SV=1 34 4.2 tr|A9X6R4|A9X6R4_PIG Integrin beta OS=Sus scrofa PE=2 SV=1 34 4.2 tr|A2FEL5|A2FEL5_TRIVA Putative uncharacterized protein OS=Trich... 34 4.2 tr|A4R192|A4R192_MAGGR Putative uncharacterized protein OS=Magna... 34 4.2 tr|Q8YP51|Q8YP51_ANASP All4349 protein OS=Anabaena sp. (strain P... 33 5.5 tr|B8A396|B8A396_MAIZE Putative uncharacterized protein OS=Zea m... 33 5.5 tr|B8A2U4|B8A2U4_MAIZE Putative uncharacterized protein OS=Zea m... 33 5.5 tr|A4GUC1|A4GUC1_PIG Integrin beta OS=Sus scrofa PE=2 SV=1 33 5.5 tr|B8ZZV4|B8ZZV4_HUMAN Putative uncharacterized protein ITGB6 OS... 33 5.5 tr|B4E2B8|B4E2B8_HUMAN cDNA FLJ54265, highly similar to Integrin... 33 5.5 tr|B2R9W5|B2R9W5_HUMAN cDNA, FLJ94586, Homo sapiens integrin, be... 33 5.5
>tr|B0UY54|B0UY54_DANRE Integrin beta OS=Danio rerio GN=itgb5 PE=3 SV=1 Length = 807
Score = 36.2 bits (82), Expect = 0.85 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Frame = +1
Query: 10 GKVLMAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 GK+ GE C+ C C I DNC CS T ++DG SGR CVCG Sbjct: 570 GKIKSGHGE------CHCGECKCHAGYIGDNCNCSTETASCV-SDDGKICSGRGSCVCG 621
>tr|B1AYG7|B1AYG7_MOUSE Integrin beta (Fragment) OS=Mus musculus GN=Itgb6 PE=3 SV=1 Length = 755
Score = 35.4 bits (80), Expect = 1.4 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +1
Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 + G+NG C + C+C + C C+ RD+ +EDG SGR CVCG Sbjct: 550 LLCGDNGDC---DCGECVCRDGWTGEYCNCT-TNRDSCTSEDGVLCSGRGDCVCG 600
>tr|B1AYG6|B1AYG6_MOUSE Integrin beta OS=Mus musculus GN=Itgb6 PE=3 SV=1 Length = 764
Score = 35.4 bits (80), Expect = 1.4 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +1
Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 + G+NG C + C+C + C C+ RD+ +EDG SGR CVCG Sbjct: 550 LLCGDNGDC---DCGECVCRDGWTGEYCNCT-TNRDSCTSEDGVLCSGRGDCVCG 600
>tr|B1AYG5|B1AYG5_MOUSE Integrin beta OS=Mus musculus GN=Itgb6 PE=3 SV=1 Length = 787
Score = 35.4 bits (80), Expect = 1.4 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +1
Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 + G+NG C + C+C + C C+ RD+ +EDG SGR CVCG Sbjct: 550 LLCGDNGDC---DCGECVCRDGWTGEYCNCT-TNRDSCTSEDGVLCSGRGDCVCG 600
>tr|B4QAP2|B4QAP2_DROSI GD25949 OS=Drosophila simulans GN=GD25949 PE=4 SV=1 Length = 1508
Score = 35.4 bits (80), Expect = 1.4 Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Frame = -1
Query: 270 LSAMASHDASPHENGAAST--HQPKEEAPLSP----PDSTHTRASSRGFSPIFRLRRISR 109 LS A H A PH +GA ST P +A SP P+ + R F P+ LRRI R Sbjct: 29 LSLPAGH-AHPHNHGATSTPISSPGNDAHQSPTAEHPNQQQQQQKRRRFHPLRNLRRIFR 87
Query: 108 RYT 100 R T Sbjct: 88 RRT 90
>tr|B4HN13|B4HN13_DROSE GM20487 OS=Drosophila sechellia GN=GM20487 PE=4 SV=1 Length = 1438
Score = 35.4 bits (80), Expect = 1.4 Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -1
Query: 270 LSAMASHDASPHENGAAST--HQPKEEAPLSP----PDSTHTRASSRGFSPIFRLRRISR 109 LS A+H A PH +GA ST P +A SP P+ + R F P+ LRRI R Sbjct: 29 LSLPAAH-AHPHTHGATSTPISSPGNDAHQSPTAEHPNQQQQQQKRRRFHPLRNLRRIFR 87
Query: 108 RYT 100 R T Sbjct: 88 RRT 90
>tr|Q4T5X5|Q4T5X5_TETNG Chromosome undetermined SCAF9050, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00006595001 PE=4 SV=1 Length = 216
Score = 35.0 bits (79), Expect = 1.9 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +1
Query: 55 CNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 C+ C C + DNC CS T ++DG SGR CVCG Sbjct: 17 CHCGECKCHAGYVGDNCNCSTETSSCI-SDDGQMCSGRGSCVCG 59
>tr|Q4S9S7|Q4S9S7_TETNG Integrin beta (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00021756001 PE=3 SV=1 Length = 823
Score = 35.0 bits (79), Expect = 1.9 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +1
Query: 55 CNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 C+ C C + DNC CS T ++DG SGR CVCG Sbjct: 615 CHCGECKCHAGYVGDNCNCSTETSSCI-SDDGQMCSGRGSCVCG 657
>tr|Q1MSX8|Q1MSX8_DANRE Integrin beta OS=Danio rerio GN=itgb5 PE=2 SV=1 Length = 823
Score = 35.0 bits (79), Expect = 1.9 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +1
Query: 55 CNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 C+ C C I DNC CS T ++DG SGR CVCG Sbjct: 595 CHCGECKCHAGYIGDNCNCSTETASCV-SDDGKICSGRGSCVCG 637
>tr|A5D6V1|A5D6V1_DANRE Integrin beta OS=Danio rerio GN=itgb5 PE=2 SV=1 Length = 802
Score = 35.0 bits (79), Expect = 1.9 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +1
Query: 55 CNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174 C+ C C I DNC CS T ++DG SGR CVCG Sbjct: 574 CHCGECKCHAGYIGDNCNCSTETASCV-SDDGKICSGRGSCVCG 616
|