BP912782
Clone id YMU001_000022_G10
Library
Length 465
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AACTGAAGAGGCAAAGTGCTCATGGCTGCGGGCGAAAACGGGACCTGCGTGGCATGTAAT
TCTTCAAGTTGCCTTTGCATCTTTGATAACTGTTGTTGCAGTATAGCGACGAGAGATGCG
TCGGAGGCGGAAGATGGGGGAGAACCCTCGGGACGAAGCCCGTGTGTGTGTGGAATCGGG
AGGAGAAAGAGGCGCCTCCTCCTTGGGTTGATGCGTGCTAGCAGCGCCATTCTCATGCGG
AGAAGCATCGTGTGACGCCATGGCGCTAAGGTAAAGAGAGTGTGCCGGAGTATGTAGGAG
GAGGTCGCTTGGGAAAAGCGCCCAAGGTGTAAAATAAGACTAGTAGTAGTAGTAGACAAC
AGGGGATAGAAAGAGCGTAAGAGATAAATTATGCACGCATGAGATACAGCTTTTAGTGAC
GTGGACGTCGCACTCTTCTCGTTGGCGTGTATTATATAGAAGGAT
■■Homology search results ■■ -
sp_hit_id Q6AYF4
Definition sp|Q6AYF4|ITB6_RAT Integrin beta-6 OS=Rattus norvegicus
Align length 55
Score (bit) 37.0
E-value 0.043
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912782|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_G10.
(465 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6AYF4|ITB6_RAT Integrin beta-6 OS=Rattus norvegicus GN=Itgb6... 37 0.043
sp|Q9Z0T9|ITB6_MOUSE Integrin beta-6 OS=Mus musculus GN=Itgb6 PE... 35 0.12
sp|Q17QV2|MON1A_BOVIN Vacuolar fusion protein MON1 homolog A OS=... 34 0.28
sp|P18563|ITB6_CAVPO Integrin beta-6 (Fragment) OS=Cavia porcell... 34 0.28
sp|Q863C4|ITB6_SHEEP Integrin beta-6 OS=Ovis aries GN=ITGB6 PE=2... 34 0.36
sp|Q1RPR6|ITB6_PIG Integrin beta-6 OS=Sus scrofa GN=ITGB6 PE=2 SV=1 34 0.36
sp|Q8SQB8|ITB6_BOVIN Integrin beta-6 OS=Bos taurus GN=ITGB6 PE=1... 34 0.36
sp|P18564|ITB6_HUMAN Integrin beta-6 OS=Homo sapiens GN=ITGB6 PE... 33 0.47
sp|O70309|ITB5_MOUSE Integrin beta-5 OS=Mus musculus GN=Itgb5 PE... 32 1.4
sp|A6S7C7|ATG2_BOTFB Autophagy-related protein 2 OS=Botryotinia ... 32 1.4
sp|Q54LU8|Y8646_DICDI Probable serine/threonine-protein kinase D... 30 1.5
sp|P80747|ITB5_BOVIN Integrin beta-5 OS=Bos taurus GN=ITGB5 PE=1... 32 1.8
sp|Q95KG9|MON1A_MACFA Vacuolar fusion protein MON1 homolog A OS=... 31 2.3
sp|O75690|KRA58_HUMAN Keratin-associated protein 5-8 OS=Homo sap... 31 3.1
sp|Q39LW7|SSUB2_BURS3 Aliphatic sulfonates import ATP-binding pr... 30 5.2
sp|Q9WU74|LSR_RAT Lipolysis-stimulated lipoprotein receptor OS=R... 30 5.2
sp|Q99KG5|LSR_MOUSE Lipolysis-stimulated lipoprotein receptor OS... 30 5.2
sp|P08928|LAM0_DROME Lamin Dm0 OS=Drosophila melanogaster GN=Lam... 30 5.2
sp|Q71H61|CA032_HUMAN Transmembrane and immunoglobulin domain-co... 30 5.2
sp|A7E6F5|ATG2_SCLS1 Autophagy-related protein 2 OS=Sclerotinia ... 30 5.2
sp|A6T6D8|ATKB_KLEP7 Potassium-transporting ATPase B chain OS=Kl... 30 6.7
sp|Q5BX25|SJ965_SCHJA UPF0506 protein SJCHGC02965 (Fragment) OS=... 30 6.8
sp|Q5C6R9|SJ381_SCHJA UPF0506 protein SJCHGC02381 OS=Schistosoma... 30 6.8
sp|Q5DBT1|SJ380_SCHJA UPF0506 protein SJCHGC02380 OS=Schistosoma... 30 6.8
sp|Q5DF86|SJ144_SCHJA UPF0506 protein SJCHGC03144 OS=Schistosoma... 30 6.8
sp|Q5DC74|SJ047_SCHJA UPF0506 protein SJCHGC03047 OS=Schistosoma... 30 6.8
sp|P33187|MTCD_HELPO Cadmium-metallothionein OS=Helix pomatia PE... 30 6.8
sp|Q0CKU1|GRC3_ASPTN Protein grc3 OS=Aspergillus terreus (strain... 30 6.8
sp|P60905|DNJC5_RAT DnaJ homolog subfamily C member 5 OS=Rattus ... 30 6.8
sp|P60904|DNJC5_MOUSE DnaJ homolog subfamily C member 5 OS=Mus m... 30 6.8

>sp|Q6AYF4|ITB6_RAT Integrin beta-6 OS=Rattus norvegicus GN=Itgb6
PE=2 SV=1
Length = 787

Score = 37.0 bits (84), Expect = 0.043
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +1

Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
+ G+NG C + C+C + C C+ +RDA +EDG SGR CVCG
Sbjct: 550 LLCGDNGDC---DCGECVCRDGWTGEYCNCT-TSRDACASEDGVLCSGRGDCVCG 600


>sp|Q9Z0T9|ITB6_MOUSE Integrin beta-6 OS=Mus musculus GN=Itgb6 PE=2
SV=1
Length = 787

Score = 35.4 bits (80), Expect = 0.12
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1

Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
+ G+NG C + C+C + C C+ RD+ +EDG SGR CVCG
Sbjct: 550 LLCGDNGDC---DCGECVCRDGWTGEYCNCT-TNRDSCTSEDGVLCSGRGDCVCG 600


>sp|Q17QV2|MON1A_BOVIN Vacuolar fusion protein MON1 homolog A OS=Bos
taurus GN=MON1A PE=2 SV=1
Length = 555

Score = 34.3 bits (77), Expect = 0.28
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -1

Query: 279 SLYLSAMASHDASPHENGAASTHQPKEEAPLSPPDSTHTRASSRGFSPI 133
++++ A + D + E+GAAS PKE A PP +T R S+ FS +
Sbjct: 49 AMFVHARSYEDLTESEDGAASGESPKEGAGGPPPLATDMRQISQDFSEL 97


>sp|P18563|ITB6_CAVPO Integrin beta-6 (Fragment) OS=Cavia porcellus
GN=ITGB6 PE=2 SV=1
Length = 577

Score = 34.3 bits (77), Expect = 0.28
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +1

Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
+ G+NG C C+C + C C+ +T D +EDG SGR CVCG
Sbjct: 409 LLCGDNGDC---ECGECVCRSGWTGEYCNCTTST-DTCISEDGTLCSGRGDCVCG 459


>sp|Q863C4|ITB6_SHEEP Integrin beta-6 OS=Ovis aries GN=ITGB6 PE=2
SV=1
Length = 787

Score = 33.9 bits (76), Expect = 0.36
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1

Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
+ G+NG C + C+C + C C+ +T D +EDG SGR CVCG
Sbjct: 550 LLCGDNGDC---DCGECVCRSGWTGEYCNCTTST-DPCVSEDGILCSGRGDCVCG 600


>sp|Q1RPR6|ITB6_PIG Integrin beta-6 OS=Sus scrofa GN=ITGB6 PE=2 SV=1
Length = 788

Score = 33.9 bits (76), Expect = 0.36
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +1

Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
+ G+NG C C+C + C C+ +T D +EDG SGR CVCG
Sbjct: 550 LLCGDNGDC---ECGECVCRSGWTGEYCNCTTST-DQCVSEDGVLCSGRGDCVCG 600


>sp|Q8SQB8|ITB6_BOVIN Integrin beta-6 OS=Bos taurus GN=ITGB6 PE=1
SV=1
Length = 788

Score = 33.9 bits (76), Expect = 0.36
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1

Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
+ G+NG C + C+C + C C+ +T D +EDG SGR CVCG
Sbjct: 550 LLCGDNGDC---DCGECVCRSGWTGEYCNCTTST-DPCVSEDGILCSGRGDCVCG 600


>sp|P18564|ITB6_HUMAN Integrin beta-6 OS=Homo sapiens GN=ITGB6 PE=1
SV=2
Length = 788

Score = 33.5 bits (75), Expect = 0.47
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1

Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
+ G NG C + C+C + C C+ +T D+ +EDG SGR CVCG
Sbjct: 550 LLCGGNGDC---DCGECVCRSGWTGEYCNCTTST-DSCVSEDGVLCSGRGDCVCG 600


>sp|O70309|ITB5_MOUSE Integrin beta-5 OS=Mus musculus GN=Itgb5 PE=2
SV=2
Length = 798

Score = 32.0 bits (71), Expect = 1.4
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +1

Query: 7 RGKVLMAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
R K ++ +G C+ C C I DNC CS +A+DG S R CVCG
Sbjct: 557 RNKGVLCSGHG----ECHCGECKCHAGYIGDNCNCSTDV-STCKAKDGQICSDRGRCVCG 611


>sp|A6S7C7|ATG2_BOTFB Autophagy-related protein 2 OS=Botryotinia
fuckeliana (strain B05.10) GN=atg2 PE=3 SV=1
Length = 2160

Score = 32.0 bits (71), Expect = 1.4
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -1

Query: 318 LFPSDLLLHTPAHSLYLSAMASHDASPHENGAASTHQPKEEA---PLSPPD 175
L S L H A S+Y+SA++ A+P G A + E+A PL+P D
Sbjct: 556 LAQSQLFSHEEAESMYMSAVSFTSAAPIPGGWADSGTESEDARSPPLTPTD 606


tr_hit_id B0UY54
Definition tr|B0UY54|B0UY54_DANRE Integrin beta OS=Danio rerio
Align length 59
Score (bit) 36.2
E-value 0.85
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912782|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_G10.
(465 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B0UY54|B0UY54_DANRE Integrin beta OS=Danio rerio GN=itgb5 PE=... 36 0.85
tr|B1AYG7|B1AYG7_MOUSE Integrin beta (Fragment) OS=Mus musculus ... 35 1.4
tr|B1AYG6|B1AYG6_MOUSE Integrin beta OS=Mus musculus GN=Itgb6 PE... 35 1.4
tr|B1AYG5|B1AYG5_MOUSE Integrin beta OS=Mus musculus GN=Itgb6 PE... 35 1.4
tr|B4QAP2|B4QAP2_DROSI GD25949 OS=Drosophila simulans GN=GD25949... 35 1.4
tr|B4HN13|B4HN13_DROSE GM20487 OS=Drosophila sechellia GN=GM2048... 35 1.4
tr|Q4T5X5|Q4T5X5_TETNG Chromosome undetermined SCAF9050, whole g... 35 1.9
tr|Q4S9S7|Q4S9S7_TETNG Integrin beta (Fragment) OS=Tetraodon nig... 35 1.9
tr|Q1MSX8|Q1MSX8_DANRE Integrin beta OS=Danio rerio GN=itgb5 PE=... 35 1.9
tr|A5D6V1|A5D6V1_DANRE Integrin beta OS=Danio rerio GN=itgb5 PE=... 35 1.9
tr|A7SM23|A7SM23_NEMVE Integrin beta (Fragment) OS=Nematostella ... 35 1.9
tr|Q6DF97|Q6DF97_XENLA Integrin beta OS=Xenopus laevis GN=itgb5-... 35 2.5
tr|A5Z1X7|A5Z1X7_CAMBA Integrin beta OS=Camelus bactrianus PE=2 ... 35 2.5
tr|B4NSC7|B4NSC7_DROSI GD15260 OS=Drosophila simulans GN=GD15260... 35 2.5
tr|B5DEV6|B5DEV6_XENTR Putative uncharacterized protein OS=Xenop... 34 3.2
tr|Q6T683|Q6T683_CHICK Integrin beta OS=Gallus gallus PE=2 SV=1 34 4.2
tr|B2JTM6|B2JTM6_BURP8 Tetratricopeptide TPR_2 repeat protein OS... 34 4.2
tr|B5GAR9|B5GAR9_9ACTO Sugar ABC transporter ATP-binding protein... 34 4.2
tr|Q1RPR5|Q1RPR5_PIG Integrin beta OS=Sus scrofa GN=ITGB6 PE=2 SV=1 34 4.2
tr|B0FYY3|B0FYY3_SHEEP Integrin beta OS=Ovis aries PE=2 SV=1 34 4.2
tr|A9X6R4|A9X6R4_PIG Integrin beta OS=Sus scrofa PE=2 SV=1 34 4.2
tr|A2FEL5|A2FEL5_TRIVA Putative uncharacterized protein OS=Trich... 34 4.2
tr|A4R192|A4R192_MAGGR Putative uncharacterized protein OS=Magna... 34 4.2
tr|Q8YP51|Q8YP51_ANASP All4349 protein OS=Anabaena sp. (strain P... 33 5.5
tr|B8A396|B8A396_MAIZE Putative uncharacterized protein OS=Zea m... 33 5.5
tr|B8A2U4|B8A2U4_MAIZE Putative uncharacterized protein OS=Zea m... 33 5.5
tr|A4GUC1|A4GUC1_PIG Integrin beta OS=Sus scrofa PE=2 SV=1 33 5.5
tr|B8ZZV4|B8ZZV4_HUMAN Putative uncharacterized protein ITGB6 OS... 33 5.5
tr|B4E2B8|B4E2B8_HUMAN cDNA FLJ54265, highly similar to Integrin... 33 5.5
tr|B2R9W5|B2R9W5_HUMAN cDNA, FLJ94586, Homo sapiens integrin, be... 33 5.5

>tr|B0UY54|B0UY54_DANRE Integrin beta OS=Danio rerio GN=itgb5 PE=3
SV=1
Length = 807

Score = 36.2 bits (82), Expect = 0.85
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +1

Query: 10 GKVLMAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
GK+ GE C+ C C I DNC CS T ++DG SGR CVCG
Sbjct: 570 GKIKSGHGE------CHCGECKCHAGYIGDNCNCSTETASCV-SDDGKICSGRGSCVCG 621


>tr|B1AYG7|B1AYG7_MOUSE Integrin beta (Fragment) OS=Mus musculus
GN=Itgb6 PE=3 SV=1
Length = 755

Score = 35.4 bits (80), Expect = 1.4
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1

Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
+ G+NG C + C+C + C C+ RD+ +EDG SGR CVCG
Sbjct: 550 LLCGDNGDC---DCGECVCRDGWTGEYCNCT-TNRDSCTSEDGVLCSGRGDCVCG 600


>tr|B1AYG6|B1AYG6_MOUSE Integrin beta OS=Mus musculus GN=Itgb6 PE=3
SV=1
Length = 764

Score = 35.4 bits (80), Expect = 1.4
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1

Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
+ G+NG C + C+C + C C+ RD+ +EDG SGR CVCG
Sbjct: 550 LLCGDNGDC---DCGECVCRDGWTGEYCNCT-TNRDSCTSEDGVLCSGRGDCVCG 600


>tr|B1AYG5|B1AYG5_MOUSE Integrin beta OS=Mus musculus GN=Itgb6 PE=3
SV=1
Length = 787

Score = 35.4 bits (80), Expect = 1.4
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1

Query: 22 MAAGENGTCVACNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
+ G+NG C + C+C + C C+ RD+ +EDG SGR CVCG
Sbjct: 550 LLCGDNGDC---DCGECVCRDGWTGEYCNCT-TNRDSCTSEDGVLCSGRGDCVCG 600


>tr|B4QAP2|B4QAP2_DROSI GD25949 OS=Drosophila simulans GN=GD25949
PE=4 SV=1
Length = 1508

Score = 35.4 bits (80), Expect = 1.4
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = -1

Query: 270 LSAMASHDASPHENGAAST--HQPKEEAPLSP----PDSTHTRASSRGFSPIFRLRRISR 109
LS A H A PH +GA ST P +A SP P+ + R F P+ LRRI R
Sbjct: 29 LSLPAGH-AHPHNHGATSTPISSPGNDAHQSPTAEHPNQQQQQQKRRRFHPLRNLRRIFR 87

Query: 108 RYT 100
R T
Sbjct: 88 RRT 90


>tr|B4HN13|B4HN13_DROSE GM20487 OS=Drosophila sechellia GN=GM20487
PE=4 SV=1
Length = 1438

Score = 35.4 bits (80), Expect = 1.4
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = -1

Query: 270 LSAMASHDASPHENGAAST--HQPKEEAPLSP----PDSTHTRASSRGFSPIFRLRRISR 109
LS A+H A PH +GA ST P +A SP P+ + R F P+ LRRI R
Sbjct: 29 LSLPAAH-AHPHTHGATSTPISSPGNDAHQSPTAEHPNQQQQQQKRRRFHPLRNLRRIFR 87

Query: 108 RYT 100
R T
Sbjct: 88 RRT 90


>tr|Q4T5X5|Q4T5X5_TETNG Chromosome undetermined SCAF9050, whole
genome shotgun sequence. (Fragment) OS=Tetraodon
nigroviridis GN=GSTENG00006595001 PE=4 SV=1
Length = 216

Score = 35.0 bits (79), Expect = 1.9
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +1

Query: 55 CNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
C+ C C + DNC CS T ++DG SGR CVCG
Sbjct: 17 CHCGECKCHAGYVGDNCNCSTETSSCI-SDDGQMCSGRGSCVCG 59


>tr|Q4S9S7|Q4S9S7_TETNG Integrin beta (Fragment) OS=Tetraodon
nigroviridis GN=GSTENG00021756001 PE=3 SV=1
Length = 823

Score = 35.0 bits (79), Expect = 1.9
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +1

Query: 55 CNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
C+ C C + DNC CS T ++DG SGR CVCG
Sbjct: 615 CHCGECKCHAGYVGDNCNCSTETSSCI-SDDGQMCSGRGSCVCG 657


>tr|Q1MSX8|Q1MSX8_DANRE Integrin beta OS=Danio rerio GN=itgb5 PE=2
SV=1
Length = 823

Score = 35.0 bits (79), Expect = 1.9
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +1

Query: 55 CNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
C+ C C I DNC CS T ++DG SGR CVCG
Sbjct: 595 CHCGECKCHAGYIGDNCNCSTETASCV-SDDGKICSGRGSCVCG 637


>tr|A5D6V1|A5D6V1_DANRE Integrin beta OS=Danio rerio GN=itgb5 PE=2
SV=1
Length = 802

Score = 35.0 bits (79), Expect = 1.9
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +1

Query: 55 CNSSSCLC----IFDNCCCSIATRDASEAEDGGEPSGRSPCVCG 174
C+ C C I DNC CS T ++DG SGR CVCG
Sbjct: 574 CHCGECKCHAGYIGDNCNCSTETASCV-SDDGKICSGRGSCVCG 616