NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912783
Clone id YMU001_000022_G11
Library
Length 157
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTGCTGGCAGATTTTAGCAAGGATATAAGAGGCTTGAGGTGTATCGTGAGTGGATCAGG
CAAGGTTGCATTGCACGTTGTGGAGAAGCTGATAGCTGTGGGAACTGTACCAGTCACAGT
CTCAGATTCGAGAGGTTATCTATATGATGAGGCTGGT
■■Homology search results ■■ -
sp_hit_id P55990
Definition sp|P55990|DHE4_HELPY NADP-specific glutamate dehydrogenase OS=Helicobacter pylori
Align length 52
Score (bit) 55.1
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912783|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_G11.
         (157 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55990|DHE4_HELPY NADP-specific glutamate dehydrogenase OS=He...    55   1e-07
sp|Q9ZKD8|DHE4_HELPJ NADP-specific glutamate dehydrogenase OS=He...    55   1e-07
sp|P95544|DHE4_PRERU NAD(P)-specific glutamate dehydrogenase OS=...    52   9e-07
sp|P94598|DHE3_BACTN Glutamate dehydrogenase OS=Bacteroides thet...    52   9e-07
sp|Q9S1F9|DHE4_PSYT1 NADP-specific glutamate dehydrogenase OS=Ps...    52   1e-06
sp|P28998|DHE4_CHLSO NADP-specific glutamate dehydrogenase (Frag...    50   5e-06
sp|P43793|DHE4_HAEIN NADP-specific glutamate dehydrogenase OS=Ha...    45   9e-05
sp|P15111|DHE4_SALTY NADP-specific glutamate dehydrogenase OS=Sa...    45   1e-04
sp|Q8Z6F6|DHE4_SALTI NADP-specific glutamate dehydrogenase OS=Sa...    45   1e-04
sp|P14657|DHE4_UNKP NADP-specific glutamate dehydrogenase OS=Unk...    42   0.001
sp|P00370|DHE4_ECOLI NADP-specific glutamate dehydrogenase OS=Es...    42   0.001
sp|P28724|DHE4_GIALA NADP-specific glutamate dehydrogenase OS=Gi...    41   0.002
sp|P39708|DHE5_YEAST NADP-specific glutamate dehydrogenase 2 OS=...    39   0.008
sp|P07262|DHE4_YEAST NADP-specific glutamate dehydrogenase 1 OS=...    38   0.018
sp|P31026|DHE4_CORGL NADP-specific glutamate dehydrogenase OS=Co...    37   0.024
sp|Q8TFF6|DHE4_SACBA NADP-specific glutamate dehydrogenase 1 OS=...    37   0.040
sp|Q8RQP4|DHE4_COREF NADP-specific glutamate dehydrogenase OS=Co...    37   0.040
sp|P29507|DHE4_DEBOC NADP-specific glutamate dehydrogenase OS=De...    36   0.069
sp|Q03578|DHE2_PORGI NAD-specific glutamate dehydrogenase OS=Por...    36   0.069
sp|P94316|DHE2_BACFR NAD-specific glutamate dehydrogenase OS=Bac...    36   0.069
sp|Q9HGU3|DHE4_NEUSI NADP-specific glutamate dehydrogenase OS=Ne...    35   0.090
sp|Q9HGU4|DHE4_NEUIN NADP-specific glutamate dehydrogenase OS=Ne...    35   0.090
sp|P00369|DHE4_NEUCR NADP-specific glutamate dehydrogenase OS=Ne...    35   0.090
sp|P78804|DHE4_SCHPO NADP-specific glutamate dehydrogenase OS=Sc...    35   0.12 
sp|O93934|DHE4_BOTFU NADP-specific glutamate dehydrogenase OS=Bo...    35   0.12 
sp|Q96VJ7|DHE4_GIBFU NADP-specific glutamate dehydrogenase OS=Gi...    34   0.20 
sp|Q9HFR6|DHE4_TUBBO NADP-specific glutamate dehydrogenase OS=Tu...    34   0.26 
sp|Q96UJ9|DHE4_HEBCY NADP-specific glutamate dehydrogenase OS=He...    33   0.34 
sp|P18819|DHE4_EMENI NADP-specific glutamate dehydrogenase OS=Em...    33   0.34 
sp|P54387|DHE4_AGABI NADP-specific glutamate dehydrogenase OS=Ag...    33   0.34 

>sp|P55990|DHE4_HELPY NADP-specific glutamate dehydrogenase
           OS=Helicobacter pylori GN=gdhA PE=3 SV=1
          Length = 448

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 24/52 (46%), Positives = 35/52 (67%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +L + +  + G  C VSGSG VA++ +EKL+ +G  PVT SDS G +YD+ G
Sbjct: 218 MLQERNSSLEGKVCSVSGSGNVAIYTIEKLLQIGAKPVTASDSNGMIYDKDG 269


>sp|Q9ZKD8|DHE4_HELPJ NADP-specific glutamate dehydrogenase
           OS=Helicobacter pylori J99 GN=gdhA PE=3 SV=1
          Length = 448

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 24/52 (46%), Positives = 35/52 (67%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +L + +  + G  C VSGSG VA++ +EKL+ +G  PVT SDS G +YD+ G
Sbjct: 218 MLQERNSSLEGKVCSVSGSGNVAIYTIEKLLQIGAKPVTASDSNGMIYDKDG 269


>sp|P95544|DHE4_PRERU NAD(P)-specific glutamate dehydrogenase
           OS=Prevotella ruminicola GN=gdhA PE=3 SV=1
          Length = 444

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 24/52 (46%), Positives = 33/52 (63%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +L    + + G   +VSGSG VA + +EKL+ +G  PVT SDS GY+YD  G
Sbjct: 218 MLKTRGESLEGKTVLVSGSGNVAQYTIEKLLQLGAKPVTCSDSNGYIYDPDG 269


>sp|P94598|DHE3_BACTN Glutamate dehydrogenase OS=Bacteroides
           thetaiotaomicron GN=gdhA PE=3 SV=2
          Length = 444

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = +2

Query: 23  DIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           D++G  C+VSGSG VA + +EK+I +G   VT SDS GY+YD  G
Sbjct: 225 DLKGKVCLVSGSGNVAQYTIEKVIELGGKVVTCSDSDGYIYDPDG 269


>sp|Q9S1F9|DHE4_PSYT1 NADP-specific glutamate dehydrogenase
           OS=Psychrobacter sp. (strain TAD1) GN=gdhA PE=1 SV=4
          Length = 448

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 23/52 (44%), Positives = 35/52 (67%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +LA  ++ I G + +VSG+G V+LH  EK   +G + +TVSDS+G +YD  G
Sbjct: 218 MLAAQNESIEGKKVLVSGAGNVSLHAAEKATLIGAIVLTVSDSKGTIYDAKG 269


>sp|P28998|DHE4_CHLSO NADP-specific glutamate dehydrogenase
           (Fragment) OS=Chlorella sorokiniana PE=2 SV=1
          Length = 523

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 21/52 (40%), Positives = 36/52 (69%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +L D  + ++G RC+VSG+G VA +  E L+  G + +++SDS+GY+Y+  G
Sbjct: 296 VLKDKGESLKGKRCLVSGAGNVAQYCAELLLEKGAIVLSLSDSQGYVYEPNG 347


>sp|P43793|DHE4_HAEIN NADP-specific glutamate dehydrogenase
           OS=Haemophilus influenzae GN=gdhA PE=3 SV=1
          Length = 449

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 23/52 (44%), Positives = 31/52 (59%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +LA+      G    VSGSG VA + +EK +++G   VT SDS GY+YD  G
Sbjct: 222 MLAEKGDSFAGKVVSVSGSGNVAQYAIEKALSLGAKVVTCSDSSGYVYDPNG 273


>sp|P15111|DHE4_SALTY NADP-specific glutamate dehydrogenase
           OS=Salmonella typhimurium GN=gdhA PE=3 SV=2
          Length = 447

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +2

Query: 32  GLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           G+R  VSGSG VA + +EK +A G   VT SDS G + DE+G
Sbjct: 232 GMRVAVSGSGNVAQYAIEKAMAFGARVVTASDSSGTVVDESG 273


>sp|Q8Z6F6|DHE4_SALTI NADP-specific glutamate dehydrogenase
           OS=Salmonella typhi GN=gdhA PE=3 SV=1
          Length = 447

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +2

Query: 32  GLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           G+R  VSGSG VA + +EK +A G   VT SDS G + DE+G
Sbjct: 232 GMRVAVSGSGNVAQYAIEKAMAFGARVVTASDSSGTVVDESG 273


>sp|P14657|DHE4_UNKP NADP-specific glutamate dehydrogenase
           OS=Unknown prokaryotic organism GN=gdhA PE=3 SV=1
          Length = 446

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = +2

Query: 32  GLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           G+R  VSGSG VA + +EK + +    +TVSDS G L DE G
Sbjct: 232 GMRVAVSGSGNVAQYTIEKALELDARVITVSDSGGTLVDEDG 273
tr_hit_id A7P6U7
Definition tr|A7P6U7|A7P6U7_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera
Align length 52
Score (bit) 81.3
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912783|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_G11.
         (157 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P6U7|A7P6U7_VITVI Chromosome chr9 scaffold_7, whole genome ...    81   2e-14
tr|A5APE2|A5APE2_VITVI Putative uncharacterized protein OS=Vitis...    81   2e-14
tr|Q9C8I0|Q9C8I0_ARATH NADP-specific glutatamate dehydrogenase, ...    79   9e-14
tr|A9RG07|A9RG07_PHYPA Predicted protein OS=Physcomitrella paten...    76   7e-13
tr|A9RTS6|A9RTS6_PHYPA Predicted protein OS=Physcomitrella paten...    76   1e-12
tr|Q5JKR7|Q5JKR7_ORYSJ Putative NADP-specific glutamate dehydrog...    75   2e-12
tr|B8AA37|B8AA37_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A2ZUD2|A2ZUD2_ORYSJ Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A9RXU2|A9RXU2_PHYPA Predicted protein OS=Physcomitrella paten...    74   3e-12
tr|Q14VG8|Q14VG8_HEVBR Putative NADP-specific glutatamate dehydr...    74   5e-12
tr|Q30QE4|Q30QE4_SULDN Glutamate dehydrogenase (NADP) OS=Sulfuri...    64   5e-09
tr|A7AS73|A7AS73_BABBO Glutamate dehydrogenase, putative OS=Babe...    60   4e-08
tr|A7GWG7|A7GWG7_CAMC5 NAD(P)-specific glutamate dehydrogenase O...    58   2e-07
tr|Q6SI43|Q6SI43_9BACT Glutamate dehydrogenase OS=uncultured mar...    58   2e-07
tr|A7ZB01|A7ZB01_CAMC1 NAD(P)-specific glutamate dehydrogenase (...    58   3e-07
tr|Q7VGS9|Q7VGS9_HELHP Glutamate dehydrogenase OS=Helicobacter h...    57   4e-07
tr|B5CYL1|B5CYL1_9BACE Putative uncharacterized protein OS=Bacte...    57   6e-07
tr|B3JKM7|B3JKM7_9BACE Putative uncharacterized protein OS=Bacte...    57   6e-07
tr|Q1VBD1|Q1VBD1_VIBAL Glutamate dehydrogenase OS=Vibrio alginol...    56   8e-07
tr|A7JY81|A7JY81_9VIBR NADP-specific glutamate dehydrogenase OS=...    56   8e-07
tr|Q17YH3|Q17YH3_HELAH NADP-specific glutamate dehydrogenase OS=...    55   1e-06
tr|B2UP90|B2UP90_AKKM8 Glutamate dehydrogenase (NADP(+)) OS=Akke...    55   1e-06
tr|Q7M823|Q7M823_WOLSU NADP-SPECIFIC GLUTAMATE DEHYDROGENASE OS=...    55   2e-06
tr|Q1CSJ3|Q1CSJ3_HELPH Glutamate dehydrogenase OS=Helicobacter p...    55   2e-06
tr|B6JMR5|B6JMR5_HELP2 NADP-specific glutamate dehydrogenase OS=...    55   2e-06
tr|B5Z871|B5Z871_HELPG Glutamate dehydrogenase OS=Helicobacter p...    55   2e-06
tr|B8IZX9|B8IZX9_DESDE Glutamate dehydrogenase (NADP(+)) OS=Desu...    55   2e-06
tr|B6WSB9|B6WSB9_9DELT Putative uncharacterized protein OS=Desul...    55   2e-06
tr|B3LA84|B3LA84_PLAKH Glutamate dehydrogenase, putative OS=Plas...    55   2e-06
tr|B2UUI0|B2UUI0_HELPS Glutamate dehydrogenase OS=Helicobacter p...    55   2e-06

>tr|A7P6U7|A7P6U7_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034207001
           PE=3 SV=1
          Length = 449

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 35/52 (67%), Positives = 46/52 (88%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +LAD +K+++GLRC+VSGSGK+ALHV EKL+A G +P+TVSDS+GYL DE G
Sbjct: 218 MLADMNKELKGLRCVVSGSGKIALHVTEKLLAYGALPITVSDSKGYLVDEDG 269


>tr|A5APE2|A5APE2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043645 PE=4 SV=1
          Length = 638

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 35/52 (67%), Positives = 46/52 (88%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +LAD +K+++GLRC+VSGSGK+ALHV EKL+A G +P+TVSDS+GYL DE G
Sbjct: 408 MLADMNKELKGLRCVVSGSGKIALHVTEKLLAYGALPITVSDSKGYLVDEDG 459


>tr|Q9C8I0|Q9C8I0_ARATH NADP-specific glutatamate dehydrogenase,
           putative OS=Arabidopsis thaliana GN=F19C24.7 PE=3 SV=1
          Length = 624

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 36/52 (69%), Positives = 45/52 (86%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +LAD +K+I+GLRC+VSG GK+A+HVVEKLIA G  PVTVSDS+GYL D+ G
Sbjct: 394 ILADMNKEIKGLRCVVSGCGKIAMHVVEKLIACGAHPVTVSDSKGYLVDDDG 445


>tr|A9RG07|A9RG07_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_113728 PE=3 SV=1
          Length = 579

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +LA   KD++GLRC+VSG+GKVAL+ VEKLIA G +PVTVSD+ GY+ DE G
Sbjct: 351 VLASLEKDLKGLRCVVSGAGKVALYAVEKLIAFGAIPVTVSDTSGYILDEGG 402


>tr|A9RTS6|A9RTS6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_70453 PE=3 SV=1
          Length = 578

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 34/52 (65%), Positives = 44/52 (84%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +LA+  KD++ LRC+VSG+GKVAL+ VEKLIA G VP+T+SD+RGYL DE G
Sbjct: 350 VLANLEKDLKDLRCVVSGAGKVALYAVEKLIAFGAVPITISDTRGYLLDEDG 401


>tr|Q5JKR7|Q5JKR7_ORYSJ Putative NADP-specific glutamate
           dehydrogenase (NADP-GDH) (NADP-dependent glutamate
           dehydrogenase) (Os01g0558200 protein) OS=Oryza sativa
           subsp. japonica GN=B1064G04.5 PE=3 SV=1
          Length = 640

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 31/52 (59%), Positives = 45/52 (86%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +LAD +K+++GLRC++SGSGK+A+HV+EKL++   +PVTVSDS+GYL D  G
Sbjct: 410 VLADMNKELKGLRCVISGSGKIAMHVLEKLLSCEAIPVTVSDSKGYLLDTEG 461


>tr|B8AA37|B8AA37_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02416 PE=4 SV=1
          Length = 556

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 31/52 (59%), Positives = 45/52 (86%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +LAD +K+++GLRC++SGSGK+A+HV+EKL++   +PVTVSDS+GYL D  G
Sbjct: 326 VLADMNKELKGLRCVISGSGKIAMHVLEKLLSCEAIPVTVSDSKGYLLDTEG 377


>tr|A2ZUD2|A2ZUD2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_002154 PE=3 SV=1
          Length = 656

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 31/52 (59%), Positives = 45/52 (86%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +LAD +K+++GLRC++SGSGK+A+HV+EKL++   +PVTVSDS+GYL D  G
Sbjct: 410 VLADMNKELKGLRCVISGSGKIAMHVLEKLLSCEAIPVTVSDSKGYLLDTEG 461


>tr|A9RXU2|A9RXU2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_179243 PE=3 SV=1
          Length = 572

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 33/52 (63%), Positives = 43/52 (82%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRGYLYDEAG 157
           +L D  +D++ LRC+VSG+GKVAL+ VEKLI+ G VPVT+SD+RGYL DE G
Sbjct: 344 VLTDLHRDLKDLRCVVSGAGKVALYAVEKLISFGAVPVTISDTRGYLLDEEG 395


>tr|Q14VG8|Q14VG8_HEVBR Putative NADP-specific glutatamate
           dehydrogenase (Fragment) OS=Hevea brasiliensis PE=2 SV=1
          Length = 276

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 32/45 (71%), Positives = 42/45 (93%)
 Frame = +2

Query: 2   LLADFSKDIRGLRCIVSGSGKVALHVVEKLIAVGTVPVTVSDSRG 136
           +LAD +K+++GLRC+VSGSGK+A+HV+EKLIA G VPVTVSDS+G
Sbjct: 232 MLADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAVPVTVSDSKG 276