BP912784 |
Clone id |
YMU001_000022_G12 |
Library |
YMU01 |
Length |
558 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000022_G12. |
Accession |
BP912784 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
GTGACGGTAGGAGCAAGGAGGATCAAGAAGAAGAAAGAGAAGAAGAAGCCATGGCTGCCG TCTCTGCTTCTACTCTCTCCGCCTCGGTGGCGGCAACTGCCCCCGCTGCTTCTCTGAAGT CGGAATTCTCTGGCGTTCAGGTGCAGGGCATCCCCTCCCTCTCTCCTAAGCTATCCGCCC GCTCCCTCAGAATCGAGGCAAGTGGTGTCAAGAAGATCTCGACCAAAACTCCCTTGGGAC CTTCCGGCGATACCAAATTCAAGGGTAACCTGTATGCCTCTGATCGCAAAGCTAAGGGAA AGGGAGTCTACCAATATACCAAGAAGTATGGTGCTAATGTCGATGGATACAGCCCTATCT ATGTCCCAGAGGAATGGTCAACTTCTGGTGATAGCTATGCTGCAGGTCCTACTGGATTGG CTATCTGGGCAGTTACCCTCGGCGCTATCTTGTTGGGTGGTGCCCTCTTAGTGTACAACA CCAGTGCCCTTGCTCAATGATTGCTTTTGTATGTTCATGAGGTGAATCCTGAATTCTGAC ACACTATGCGTCTTCCAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40163 |
Definition |
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum |
Align length |
121 |
Score (bit) |
131.0 |
E-value |
3.0e-30 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912784|Adiantum capillus-veneris mRNA, clone: YMU001_000022_G12. (558 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 131 3e-30 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 130 6e-30 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 129 1e-29 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 127 5e-29 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 126 6e-29 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 122 9e-28 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 121 3e-27 sp|P43691|GATA4_CHICK Transcription factor GATA-4 (Fragment) OS=... 32 2.1 sp|O22141|GAE4_ARATH UDP-glucuronate 4-epimerase 4 OS=Arabidopsi... 31 4.7 sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsi... 30 6.1 sp|Q9LPC1|GAE2_ARATH UDP-glucuronate 4-epimerase 2 OS=Arabidopsi... 30 6.1 sp|A6NCQ9|RN222_HUMAN RING finger protein 222 OS=Homo sapiens GN... 30 8.0 sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus... 30 8.0
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 131 bits (329), Expect = 3e-30 Identities = 68/121 (56%), Positives = 80/121 (66%) Frame = +3
Query: 135 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLYASDRKAKGKGVYQ 314 + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + + AS RK KGKGVYQ Sbjct: 20 ISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQ 77
Query: 315 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 494 Y KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 78 YVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137
Query: 495 Q 497 Q Sbjct: 138 Q 138
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 130 bits (326), Expect = 6e-30 Identities = 68/119 (57%), Positives = 79/119 (66%) Frame = +3
Query: 141 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLYASDRKAKGKGVYQYT 320 V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + + AS RK KGKGVYQY Sbjct: 22 VKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79
Query: 321 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 497 KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 80 DKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 129 bits (323), Expect = 1e-29 Identities = 66/119 (55%), Positives = 80/119 (67%) Frame = +3
Query: 141 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLYASDRKAKGKGVYQYT 320 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + + AS RK KGKGVYQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 321 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 497 KYGANVDGYSPIY ++WS SGD Y G TGLAIWAVT V+NTSALAQ Sbjct: 78 DKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 127 bits (318), Expect = 5e-29 Identities = 67/121 (55%), Positives = 78/121 (64%) Frame = +3
Query: 135 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLYASDRKAKGKGVYQ 314 + +G+PSL+ + S S RI ASGVKKI T P G +G + + AS RK KG GVY+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 315 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 494 + KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
Query: 495 Q 497 Q Sbjct: 141 Q 141
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 126 bits (317), Expect = 6e-29 Identities = 67/119 (56%), Positives = 77/119 (64%) Frame = +3
Query: 141 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLYASDRKAKGKGVYQYT 320 V+G+PSLS S+ S + ASGVKKI PLG G K + + +S RK GKGVYQ+ Sbjct: 24 VKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFV 81
Query: 321 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 497 KYGANVDGYSPIY EEW+ +GD YA G TGL IWAVT VYNTSALAQ Sbjct: 82 DKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 122 bits (307), Expect = 9e-28 Identities = 66/118 (55%), Positives = 75/118 (63%) Frame = +3
Query: 144 QGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLYASDRKAKGKGVYQYTK 323 +G+PSL+ + S +I ASGVKKI T P G +G + + AS RK KG GVY+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 324 KYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 497 KYGANVDGYSPIY EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 121 bits (303), Expect = 3e-27 Identities = 67/126 (53%), Positives = 75/126 (59%) Frame = +3
Query: 117 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLYASDRKAK 296 +S+ GV+ PS P SL I A KK+ T P GP G FK + AS R AK Sbjct: 21 RSKLGGVR----PSARP-----SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAK 71
Query: 297 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVY 476 GKGVYQ+ KYGANVDGYSPIY PEEWS SGD Y G TGL +WAVT VY Sbjct: 72 GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVY 131
Query: 477 NTSALA 494 +TSALA Sbjct: 132 STSALA 137
>sp|P43691|GATA4_CHICK Transcription factor GATA-4 (Fragment) OS=Gallus gallus GN=GATA4 PE=2 SV=1 Length = 380
Score = 32.0 bits (71), Expect = 2.1 Identities = 18/59 (30%), Positives = 29/59 (49%) Frame = +3
Query: 219 STKTPLGPSGDTKFKGNLYASDRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDS 395 ST TP+ PS ++ Y+S G QY++ +G++ P YV E +T+ S Sbjct: 63 STSTPI-PSTSSRDAAAAYSSSLSLSANGREQYSRGFGSSYSSPYPAYVSPEMATTWTS 120
>sp|O22141|GAE4_ARATH UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1 Length = 437
Score = 30.8 bits (68), Expect = 4.7 Identities = 18/67 (26%), Positives = 29/67 (43%) Frame = +3
Query: 198 ASGVKKISTKTPLGPSGDTKFKGNLYASDRKAKGKGVYQYTKKYGANVDGYSPIYVPEEW 377 +S V ++TK P T +LYA+ +KA + + Y YG ++ G V W Sbjct: 223 SSSVYGLNTKVPFSEKDKTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPW 282
Query: 378 STSGDSY 398 +Y Sbjct: 283 GRPDMAY 289
>sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1 Length = 430
Score = 30.4 bits (67), Expect = 6.1 Identities = 18/67 (26%), Positives = 29/67 (43%) Frame = +3
Query: 198 ASGVKKISTKTPLGPSGDTKFKGNLYASDRKAKGKGVYQYTKKYGANVDGYSPIYVPEEW 377 +S V ++TK P T +LYA+ +KA + + Y YG ++ G V W Sbjct: 217 SSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPW 276
Query: 378 STSGDSY 398 +Y Sbjct: 277 GRPDMAY 283
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NK29 |
Definition |
tr|A9NK29|A9NK29_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
129 |
Score (bit) |
137.0 |
E-value |
3.0e-31 |
Report |
|