BP912788
Clone id YMU001_000022_H04
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGGACACTTAAGTGTCCTGTTTTGGTACCGAAATTAGTGTTAAGGTGAAATTCGAGGTCA
AAGTGGATAAGTTGAAGTTTCATGACGTATGGGAATTGAGTGATTGATACGGCTATTAAC
TTGGGGCACACATAGCTTCTGGAGAATATAAAAACTCAGCTGAGATCTGTATTTTGGACA
GCTGCAACCAAATCTCTGTCAAACAGACAGAAGGGTGGAGTCATGCTCTGCAATTTCTGC
AACTCAAAACTGATGAATAATTGCAAATTTAACAGCAAAAGGATCCTAAAAGAACGGAAA
CTCAAAGGAATGATATGGCACACAGAGCTAGAGTGTTCTGAAGATGGCCCTTGACGGACA
GTGTCAGTTCCTCCACAGGTGCTTGCTTTATTAAGGCAACATTTGAGTACAATGTACCAG
GAGTGCTTGGCTTTAGGCAGGGCGGATGTGTGATAGTGCTTCCAAGCTAATCCGAAAATT
TGTGTGAGTCGAGGG
■■Homology search results ■■ -
sp_hit_id Q0DZE0
Definition sp|Q0DZE0|PAL2_ORYSJ Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica
Align length 112
Score (bit) 33.9
E-value 0.43
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912788|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_H04.
(495 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0DZE0|PAL2_ORYSJ Phenylalanine ammonia-lyase OS=Oryza sativa... 34 0.43
sp|A2X7F7|PAL2_ORYSI Phenylalanine ammonia-lyase OS=Oryza sativa... 34 0.43
sp|Q73LZ4|GUAA_TREDE GMP synthase [glutamine-hydrolyzing] OS=Tre... 33 0.73
sp|Q43210|PALY_WHEAT Phenylalanine ammonia-lyase OS=Triticum aes... 30 4.7

>sp|Q0DZE0|PAL2_ORYSJ Phenylalanine ammonia-lyase OS=Oryza sativa
subsp. japonica GN=ZB8 PE=2 SV=1
Length = 713

Score = 33.9 bits (76), Expect = 0.43
Identities = 27/112 (24%), Positives = 50/112 (44%)
Frame = +1

Query: 112 AINLGHT*LLENIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLMNNCKFNSKRILK 291
A++L H + EN+K+ ++S T A K+LS G + + FC K +LK
Sbjct: 519 AVDLRH--IEENVKSAVKSCVMTVAKKTLSTNSTGDLHVARFC-----------EKDLLK 565

Query: 292 ERKLKGMIWHTELECSEDGP*RTVSVPPQVLALLRQHLSTMYQECLALGRAD 447
E + + + + CS + P L+++ + + + LA G A+
Sbjct: 566 EIDREAVFAYADDPCSHNYP------------LMKKLRNVLVERALANGAAE 605


>sp|A2X7F7|PAL2_ORYSI Phenylalanine ammonia-lyase OS=Oryza sativa
subsp. indica GN=ZB8 PE=3 SV=1
Length = 713

Score = 33.9 bits (76), Expect = 0.43
Identities = 27/112 (24%), Positives = 50/112 (44%)
Frame = +1

Query: 112 AINLGHT*LLENIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLMNNCKFNSKRILK 291
A++L H + EN+K+ ++S T A K+LS G + + FC K +LK
Sbjct: 519 AVDLRH--IEENVKSAVKSCVMTVAKKTLSTNSTGDLHVARFC-----------EKDLLK 565

Query: 292 ERKLKGMIWHTELECSEDGP*RTVSVPPQVLALLRQHLSTMYQECLALGRAD 447
E + + + + CS + P L+++ + + + LA G A+
Sbjct: 566 EIDREAVFAYADDPCSHNYP------------LMKKLRNVLVERALANGAAE 605


>sp|Q73LZ4|GUAA_TREDE GMP synthase [glutamine-hydrolyzing]
OS=Treponema denticola GN=guaA PE=3 SV=1
Length = 523

Score = 33.1 bits (74), Expect = 0.73
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +1

Query: 136 LLENIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLMNNCKFNSKRILKERKLKGMI 315
L +NIK +S W + +S +G V N+K N+ KE+KL G+
Sbjct: 130 LFKNIKD--KSSVWMSHVDCVSRLPEGFVSAAQTANTK-------NAAMANKEKKLYGIQ 180

Query: 316 WHTELECSEDG 348
+H E+E SE+G
Sbjct: 181 FHAEVEHSEEG 191


>sp|Q43210|PALY_WHEAT Phenylalanine ammonia-lyase OS=Triticum
aestivum GN=PAL PE=3 SV=1
Length = 700

Score = 30.4 bits (67), Expect = 4.7
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1

Query: 112 AINLGHT*LLENIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLM 255
AI+L H L EN+K ++S T A K+LS G + FC L+
Sbjct: 506 AIDLRH--LEENVKNAVKSCVKTVARKTLSTDNNGHLHNARFCEKDLL 551


tr_hit_id B6SWA0
Definition tr|B6SWA0|B6SWA0_MAIZE Phenylalanine ammonia-lyase OS=Zea mays
Align length 48
Score (bit) 35.4
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912788|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_H04.
(495 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6SWA0|B6SWA0_MAIZE Phenylalanine ammonia-lyase OS=Zea mays P... 35 1.5
tr|Q92Q48|Q92Q48_RHIME Putative outer membrane transmembrane pro... 35 2.0
tr|A5A5Y8|A5A5Y8_9POAL Phenylalanine ammonia-lyase (Fragment) OS... 35 2.0
tr|A6U8K9|A6U8K9_SINMW Surface antigen (D15) OS=Sinorhizobium me... 35 2.6
tr|Q7M1Q5|Q7M1Q5_ORYSA Phenylalanine ammonia-lyase OS=Oryza sati... 35 2.6
tr|Q6K6Q1|Q6K6Q1_ORYSJ Os02g0626400 protein OS=Oryza sativa subs... 35 2.6
tr|B8AFQ7|B8AFQ7_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.6
tr|A6MZG1|A6MZG1_ORYSI Phenyl ammonia lyase (Fragment) OS=Oryza ... 35 2.6
tr|A2X7F5|A2X7F5_ORYSI Putative uncharacterized protein OS=Oryza... 34 3.4
tr|Q9FT38|Q9FT38_WHEAT Inducible phenylalanine ammonia-lyase (Fr... 34 4.4
tr|Q75HQ7|Q75HQ7_ORYSJ Os05g0427400 protein OS=Oryza sativa subs... 34 4.4
tr|B7EFQ4|B7EFQ4_ORYSJ cDNA clone:J023001A06, full insert sequen... 34 4.4
tr|A2Y4W6|A2Y4W6_ORYSI Putative uncharacterized protein OS=Oryza... 34 4.4

>tr|B6SWA0|B6SWA0_MAIZE Phenylalanine ammonia-lyase OS=Zea mays PE=2
SV=1
Length = 716

Score = 35.4 bits (80), Expect = 1.5
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1

Query: 112 AINLGHT*LLENIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLM 255
A++L H + EN+K+ ++S T A K+LS GG+ + FC L+
Sbjct: 522 AVDLRH--IEENVKSAVKSCVMTVAKKTLSTNSTGGLHVARFCEKDLL 567


>tr|Q92Q48|Q92Q48_RHIME Putative outer membrane transmembrane
protein OS=Rhizobium meliloti GN=omp PE=4 SV=1
Length = 776

Score = 35.0 bits (79), Expect = 2.0
Identities = 23/102 (22%), Positives = 46/102 (45%)
Frame = +1

Query: 145 NIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLMNNCKFNSKRILKERKLKGMIWHT 324
+I ++ ++ T +S GG ++ + ++L+N FN R +K+ KL+G++
Sbjct: 73 DIDASVKRLYATGYFSDVSITVSGGSLVVSVSENQLVNQVVFNGNRKIKDDKLQGVV--- 129

Query: 325 ELECSEDGP*RTVSVPPQVLALLRQHLSTMYQECLALGRADV 450
RT + P A + + + A+GR+DV
Sbjct: 130 ----------RTQPLGPYSEATVETDIQAIRDAYAAIGRSDV 161


>tr|A5A5Y8|A5A5Y8_9POAL Phenylalanine ammonia-lyase (Fragment)
OS=Phyllostachys edulis PE=4 SV=2
Length = 713

Score = 35.0 bits (79), Expect = 2.0
Identities = 28/112 (25%), Positives = 51/112 (45%)
Frame = +1

Query: 112 AINLGHT*LLENIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLMNNCKFNSKRILK 291
AI+L H + EN+K+ ++S T A K+LS G + + FC K +LK
Sbjct: 519 AIDLRH--IEENVKSAVKSCVMTVAKKTLSTNSTGDLHVARFC-----------EKDLLK 565

Query: 292 ERKLKGMIWHTELECSEDGP*RTVSVPPQVLALLRQHLSTMYQECLALGRAD 447
E + + + + CS + P L+++ + + + LA G+A+
Sbjct: 566 EIDREAVFAYADDPCSANYP------------LMKKMRTVLVERALANGQAE 605


>tr|A6U8K9|A6U8K9_SINMW Surface antigen (D15) OS=Sinorhizobium
medicae (strain WSM419) GN=Smed_1138 PE=3 SV=1
Length = 777

Score = 34.7 bits (78), Expect = 2.6
Identities = 23/102 (22%), Positives = 46/102 (45%)
Frame = +1

Query: 145 NIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLMNNCKFNSKRILKERKLKGMIWHT 324
+I ++ ++ T +S GG ++ + ++L+N FN R +K+ KL+G++
Sbjct: 73 DIDASVKRLYATGYFSDVSITVSGGSLVVSVSENQLVNQVVFNGNRKIKDDKLQGIV--- 129

Query: 325 ELECSEDGP*RTVSVPPQVLALLRQHLSTMYQECLALGRADV 450
RT + P A + + + A+GR+DV
Sbjct: 130 ----------RTQPLGPYSEATVETDIQAIRDAYSAIGRSDV 161


>tr|Q7M1Q5|Q7M1Q5_ORYSA Phenylalanine ammonia-lyase OS=Oryza sativa
PE=4 SV=1
Length = 716

Score = 34.7 bits (78), Expect = 2.6
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1

Query: 112 AINLGHT*LLENIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLM 255
AI+L H L EN+KT +++ A KSLS GG+ + FC L+
Sbjct: 522 AIDLRH--LEENMKTAVKNCVMQVAKKSLSMNHMGGLHIARFCEKDLL 567


>tr|Q6K6Q1|Q6K6Q1_ORYSJ Os02g0626400 protein OS=Oryza sativa subsp.
japonica GN=P0042D01.4 PE=2 SV=1
Length = 718

Score = 34.7 bits (78), Expect = 2.6
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1

Query: 112 AINLGHT*LLENIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLM 255
AI+L H L EN+KT +++ A KSLS GG+ + FC L+
Sbjct: 524 AIDLRH--LEENMKTAVKNCVMQVAKKSLSMNHMGGLHIARFCEKDLL 569


>tr|B8AFQ7|B8AFQ7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_08144 PE=4 SV=1
Length = 723

Score = 34.7 bits (78), Expect = 2.6
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1

Query: 112 AINLGHT*LLENIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLM 255
AI+L H L EN+KT +++ A KSLS GG+ + FC L+
Sbjct: 529 AIDLRH--LEENMKTAVKNCVMQVAKKSLSMNHMGGLHIARFCEKDLL 574


>tr|A6MZG1|A6MZG1_ORYSI Phenyl ammonia lyase (Fragment) OS=Oryza
sativa subsp. indica PE=2 SV=1
Length = 282

Score = 34.7 bits (78), Expect = 2.6
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1

Query: 112 AINLGHT*LLENIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLM 255
AI+L H L EN+KT +++ A KSLS GG+ + FC L+
Sbjct: 166 AIDLRH--LEENMKTAVKNCVMQVAKKSLSMNHMGGLHIARFCEKDLL 211


>tr|A2X7F5|A2X7F5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_08145 PE=4 SV=1
Length = 713

Score = 34.3 bits (77), Expect = 3.4
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1

Query: 112 AINLGHT*LLENIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLM 255
AI+L H + EN+K+ ++S T A K+LS GG+ FC L+
Sbjct: 519 AIDLRH--IEENVKSAVKSCVMTVARKTLSTSATGGLHAARFCEKDLL 564


>tr|Q9FT38|Q9FT38_WHEAT Inducible phenylalanine ammonia-lyase
(Fragment) OS=Triticum aestivum GN=PAL PE=2 SV=1
Length = 544

Score = 33.9 bits (76), Expect = 4.4
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1

Query: 112 AINLGHT*LLENIKTQLRSVFWTAATKSLSNRQKGGVMLCNFCNSKLM 255
AI+L H + EN+KT +R+ A K+LS GG+ + FC L+
Sbjct: 350 AIDLRH--IEENMKTAVRNCVMQVAKKTLSMNNMGGLHIARFCEKDLL 395